Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F28 I1 R1 227 52.0 1764248 99.3% 1751898 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,801,790 (A)7→6 coding (210/1017 nt) waaJ ← UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,801,7840A.100.0% 256.6 / NA 59coding (216/1017 nt)waaJUDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (25/34);  total (25/34)

GAAATGCAAATAAACGGAAGTACATTGCTCTTGACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTGAAAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGCATCGACACCATAGGCAACATTTAA  >  NC_000913/3801651‑3801918
                                                                                                                                     |                                                                                                                                      
gAAATGCAAATAAACGGAAGTACATTGCTCTTGACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTGaaaaagc                                                                                                                                  <  1:302844/140‑3 (MQ=255)
gAAATGCAAATAAACGGAAGTACATTGCTCTTGACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTGaaaaagc                                                                                                                                  >  2:302844/1‑138 (MQ=255)
gAAATGCAAATAAACGGAAGTACATTGCTCTTGACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTGaaaaaac                                                                                                                                  <  1:31775/140‑2 (MQ=255)
   aTGCAAATAAACGGAAGTACATTGCTCTTGACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTGaaaaaaccat                                                                                                                               <  2:508112/140‑5 (MQ=255)
   aTGCAAATAAACGGAAGTACATTGCTCTTGACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTGaaaaaaccat                                                                                                                               <  1:448354/140‑5 (MQ=255)
   aTGCAAATAAACGGAAGTACATTGCTCTTGACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTGaaaaaaccat                                                                                                                               <  2:268282/140‑5 (MQ=255)
     gCAAATAAACGGAAGTACATTGCTCTTGACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACcatca                                                                                                                            <  2:97887/140‑1 (MQ=255)
          tAAACGGAAGTACATTGCTCTTGACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATtata                                                                                                                       <  1:107297/140‑1 (MQ=255)
                gAAGTACATTGCTCTTGACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATc                                                                                                                 <  1:165165/140‑1 (MQ=255)
                     aCATTGCTCTTGACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCaa                                                                                                            <  1:827546/140‑1 (MQ=255)
                              ttGACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATaaa                                                                                                   >  1:721697/1‑140 (MQ=255)
                                gACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATaaaaa                                                                                                 >  1:64448/1‑140 (MQ=255)
                                   cAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCa                                                                                              <  1:531456/140‑1 (MQ=255)
                                      aCCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGa                                                                                           >  1:429037/1‑140 (MQ=255)
                                      aCCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGa                                                                                           >  1:456898/1‑140 (MQ=255)
                                       ccTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGAt                                                                                          <  2:456898/140‑1 (MQ=255)
                                           tgtACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAat                                                                                      >  2:12607/1‑140 (MQ=255)
                                             tACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAatat                                                                                    <  1:43293/140‑1 (MQ=255)
                                             tACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAatat                                                                                    <  1:475543/140‑1 (MQ=255)
                                                  ggCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGTAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGa                                                                               >  2:139481/1‑140 (MQ=255)
                                                     aaGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAatat                                                                                    <  1:409912/132‑1 (MQ=255)
                                                     aaGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAatat                                                                                    >  2:409912/1‑132 (MQ=255)
                                                     aaGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGatta                                                                            >  2:638742/1‑140 (MQ=255)
                                                       gCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGattatt                                                                          >  1:257028/1‑140 (MQ=255)
                                                            ggAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATTAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGa                                                                     <  2:131571/140‑1 (MQ=255)
                                                             gAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGa                                                                               >  1:521063/1‑129 (MQ=255)
                                                             gAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGa                                                                               <  2:521063/129‑1 (MQ=255)
                                                                   aTCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGa                                                                               <  2:719456/123‑1 (MQ=255)
                                                                   aTCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGa                                                                               >  1:719456/1‑123 (MQ=255)
                                                                    tCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATtgat                                                             <  2:424347/140‑1 (MQ=255)
                                                                       gtgtTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATtgatgtg                                                          <  2:878605/140‑1 (MQ=255)
                                                                         gtTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGattatt                                                                          >  1:770512/1‑122 (MQ=255)
                                                                         gtTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGattatt                                                                          <  2:770512/122‑1 (MQ=255)
                                                                          ttAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATtgatgtgatg                                                       >  1:151459/1‑140 (MQ=255)
                                                                            aaTTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGATAATTGATGTGATGGa                                                     <  2:72607/140‑1 (MQ=255)
                                                                            aaTTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGa                                                     <  2:181746/140‑1 (MQ=255)
                                                                            aaTTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGa                                                     <  1:334396/140‑1 (MQ=255)
                                                                             aTTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGa                                                     >  1:609219/1‑139 (MQ=255)
                                                                             aTTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGa                                                     <  2:609219/139‑1 (MQ=255)
                                                                               tCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAac                                                  >  1:851526/1‑140 (MQ=255)
                                                                                     taACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTac                                            >  1:285428/1‑140 (MQ=255)
                                                                                      aaCGTGATTCTTAATTGGTTTTGCTCTGTAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTaca                                           <  1:139481/140‑1 (MQ=255)
                                                                                       aCGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCttcgc                                          <  2:151459/140‑5 (MQ=255)
                                                                                       aCGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTacac                                          <  2:429037/140‑1 (MQ=255)
                                                                                        cGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACAcc                                         >  2:776068/1‑140 (MQ=255)
                                                                                           gATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATc                                      <  2:721697/140‑1 (MQ=255)
                                                                                             ttCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCaa                                    >  1:568203/1‑140 (MQ=255)
                                                                                             ttCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCaa                                    >  1:574335/1‑140 (MQ=255)
                                                                                              tCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAg                                   <  2:285428/140‑1 (MQ=255)
                                                                                              tCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAg                                   <  2:64448/140‑1 (MQ=255)
                                                                                                  aaTTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATaa                               >  2:483350/1‑140 (MQ=255)
                                                                                                      ggTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAg                           <  1:37317/140‑1 (MQ=255)
                                                                                                       gTTTTGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGc                          <  2:531170/140‑1 (MQ=255)
                                                                                                         tttGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAg                                   >  1:766236/1‑129 (MQ=255)
                                                                                                         tttGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAg                                   <  2:766236/129‑1 (MQ=255)
                                                                                                          ttGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGCATc                       >  2:108767/1‑140 (MQ=255)
                                                                                                          ttGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGCATc                       >  1:764761/1‑140 (MQ=255)
                                                                                                           tGCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCCATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGCATCg                      <  1:556625/140‑1 (MQ=255)
                                                                                                            gCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGCATCGa                     <  2:654935/140‑1 (MQ=255)
                                                                                                            gCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGCATCGa                     <  1:308870/140‑1 (MQ=255)
                                                                                                            gCTCTGCAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGCATCGa                     <  1:108767/140‑1 (MQ=255)
                                                                                                                  cAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGCATCGACACCAt               >  2:72380/1‑140 (MQ=255)
                                                                                                                  cAAGCTTTGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGCATCGACACCAt               >  2:363660/1‑140 (MQ=255)
                                                                                                                       tttGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGCATCGACACCATAGGCa          <  2:764761/140‑1 (MQ=255)
                                                                                                                        ttGCAATTTTTTG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGCATCGACACCATAGGCaa         <  1:201142/140‑1 (MQ=255)
                                                                                                                               tttttG‑AAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGCATCGACACCATAGGCAACATTTaa  <  2:851526/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                      
GAAATGCAAATAAACGGAAGTACATTGCTCTTGACCAGACCTGTGTACAAGGCAAGCACTGGAGCTTATCAGTGTTAATTCTATATAACGTGATTCTTAATTGGTTTTGCTCTGCAAGCTTTGCAATTTTTTGAAAAAAACCATCATTATAAACATCAGCAATAATATAAAAATCAAGATTAATATGTCGATTATTTAGGACAATTGATGTGATGGAAACACCTACACCATCAAGATAATTAGCATCGACACCATAGGCAACATTTAA  >  NC_000913/3801651‑3801918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A