Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F28 I1 R1
|
227 |
52.0 |
1764248 |
99.3% |
1751898 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,833,939 |
T→C |
Y200C (TAC→TGC) |
yicI ← |
alpha‑D‑xyloside xylohydrolase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,833,939 | 0 | T | C | 100.0%
| 215.2
/ NA
| 61 | Y200C (TAC→TGC) | yicI | alpha‑D‑xyloside xylohydrolase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (29/32); total (29/32) |
GGGCCGTCGATAACAAAGTATTCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGTAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAGACCGTAAACTGTTTCGCCAACGCCAAGA > NC_000913/3833804‑3834073
|
ggcgggTCGATAACAAAGTATTCGAGATATTCCCTCTCAACGCTGAACTGCACTTTAGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATgaagaa < 2:42695/135‑1 (MQ=255)
cGTCGATAACAAAGTATTCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACggg < 2:600896/140‑1 (MQ=255)
aaGTATTCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTtata < 2:641968/140‑1 (MQ=255)
aGTATTCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATAc > 2:196895/1‑140 (MQ=255)
aGTATTCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATAc > 1:72348/1‑140 (MQ=255)
aGTATTCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGCATATTTTTATAc > 2:223229/1‑140 (MQ=255)
gTATTCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACg < 2:329023/140‑1 (MQ=255)
tATTCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGc < 1:222055/140‑1 (MQ=255)
tATTCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGc < 1:440698/140‑1 (MQ=255)
tATTCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGATTAGTCATGCAGAACGGGATATTTTTATACGc < 2:27218/140‑1 (MQ=255)
ttCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGatat < 2:681810/128‑1 (MQ=255)
ttCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGatat > 1:681810/1‑128 (MQ=255)
tCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTg > 1:874279/1‑140 (MQ=255)
gagaTATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGtt < 1:196895/140‑1 (MQ=255)
tatTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGt < 1:798907/140‑1 (MQ=255)
ctcAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTgc < 1:795235/140‑1 (MQ=255)
tcAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTgcc > 1:346662/1‑140 (MQ=255)
cAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTgccg > 2:442042/1‑140 (MQ=255)
cAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTgccg > 1:139876/1‑140 (MQ=255)
cAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTgccg > 1:238865/1‑140 (MQ=255)
tGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTcc < 1:465689/140‑1 (MQ=255)
gAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTccc > 1:640846/1‑140 (MQ=255)
gCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTc < 1:162682/140‑1 (MQ=255)
tGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGtc > 2:766365/1‑140 (MQ=255)
agaCTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTctct > 1:7054/1‑140 (MQ=255)
agaCTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTctct < 1:333677/140‑1 (MQ=255)
agaCTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTA‑CCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTa < 1:690691/140‑1 (MQ=255)
gaCTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTa < 2:659630/140‑1 (MQ=255)
cGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGc < 1:442042/140‑1 (MQ=255)
aTCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCa < 2:139876/140‑1 (MQ=255)
cccACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAAAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCAtt > 1:772205/1‑140 (MQ=255)
ccACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGGCCCGGTTCCAGGTCTCTACCGTCTGGCTATTg < 2:874279/140‑1 (MQ=255)
cTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTgcgc > 1:339478/1‑140 (MQ=255)
tCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCAc > 2:702038/1‑140 (MQ=255)
tCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCAc < 1:766365/140‑1 (MQ=255)
tCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCAc < 2:772205/140‑1 (MQ=255)
acacacTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCAc > 2:81870/1‑131 (MQ=255)
acacacTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCAc < 1:81870/131‑1 (MQ=255)
acacacTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGt > 2:800869/1‑140 (MQ=255)
tGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAgcg < 2:579898/140‑1 (MQ=255)
tGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAATAAAgcg < 2:666566/140‑1 (MQ=255)
gggATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCAc > 1:820692/1‑123 (MQ=255)
gggATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCAc < 2:820692/123‑1 (MQ=255)
gggATGATTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGct > 2:281845/1‑140 (MQ=255)
atgatTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCtctc < 2:72348/140‑1 (MQ=255)
atTGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCa > 1:437384/1‑140 (MQ=255)
ttGACCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAg < 1:800869/140‑1 (MQ=255)
aCCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAgcg > 2:28884/1‑128 (MQ=255)
aCCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAgcg < 1:28884/128‑1 (MQ=255)
aCCAGTACCCCATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAGAcc > 1:715865/1‑140 (MQ=255)
cATAACCACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAGACCGTAAACTGtt < 1:702038/140‑1 (MQ=255)
ccACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAGACCGTAAACTGTTTcgcc > 1:9585/1‑140 (MQ=255)
ccACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAGACCGTAAACTGTTTcgcc < 2:146711/140‑1 (MQ=255)
ccACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAGACCGTAAACTGTTTcgcc > 1:146711/1‑140 (MQ=255)
cACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAGACCGTAAACTGTTTcgcca < 2:7054/140‑1 (MQ=255)
cACGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAGACCGTAAACTGTTTcgcca < 2:398712/140‑1 (MQ=255)
cGGTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCCTCCCGGGTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCGAGACCGTAAACTGTTTcgccaac > 2:715357/1‑140 (MQ=255)
ggTTAGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAGACCGTAAACTGTTTcgccaacg > 1:207036/1‑140 (MQ=255)
aGTCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAGACCGTAAACTGTTTcgccaacgccaa > 2:321916/1‑140 (MQ=255)
tCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCGCCAGGGCAGTAAAGCGCTCTCCCAGACCGTAAACTGTTTcgcc < 2:455552/130‑1 (MQ=255)
tCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAGACCGTAAACTGTTTcgcc > 1:455552/1‑130 (MQ=255)
tCATGCAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAGACCGTAAACTGTTTCGCCAACGCCAAGa > 2:53272/1‑140 (MQ=255)
|
GGGCCGTCGATAACAAAGTATTCGAGATATTCACTCTCAACGCTGAACTGCACTTTGGAGACTTTCTCCGATCCCACTTCAAAAGAGACACACTGGGGATGATTGACCAGTACCCCATAACCACGGTTAGTCATGTAGAACGGGATATTTTTATACGCCTGTTCAGTACTTGTGCCGCCGTCCCGGTTCCAGGTCTCTACCGTCTGGCCATTGCGCACCAGGGCAGTAAAGCGCTCTCCCAGACCGTAAACTGTTTCGCCAACGCCAAGA > NC_000913/3833804‑3834073
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A