Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F28 I1 R1 227 52.0 1764248 99.3% 1751898 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,331,389 C→T H296H (CAC→CAT)  proP → osmolyte:H(+) symporter ProP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,331,3890CT100.0% 254.0 / NA 71H296H (CAC→CAT) proPosmolyte:H(+) symporter ProP
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (35/36);  total (35/36)

GAGATTGCCACTAAATACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCACGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCTGTTTGTGTTGGCGATCCC  >  NC_000913/4331255‑4331523
                                                                                                                                      |                                                                                                                                      
gagaTTGCCACTAAATACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGt                                                                                                                                   <  2:25169/140‑1 (MQ=255)
 agaTTGCCACTAAATACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTg                                                                                                                                  <  2:597782/140‑1 (MQ=255)
 agaTTGCCACTAAATACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTg                                                                                                                                  <  1:689299/140‑1 (MQ=255)
     tGCCACTAAATACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGa                                                                                                                              >  2:618752/1‑140 (MQ=255)
              aTACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCg                                                                                                                     <  2:66797/140‑1 (MQ=255)
              aTACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCg                                                                                                                     <  1:800404/140‑1 (MQ=255)
               tACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGc                                                                                                                    >  1:505698/1‑140 (MQ=255)
                  tGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCAt                                                                                                                 >  2:155176/1‑140 (MQ=255)
                     cgcAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTAt                                                                                                              >  2:171604/1‑140 (MQ=255)
                     cgcAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTAt                                                                                                              <  2:84495/140‑1 (MQ=255)
                        aGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGAt                                                                                                           <  2:505698/140‑1 (MQ=255)
                         gCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATtattat                                                                                                                       <  1:278753/127‑1 (MQ=255)
                         gCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATtattat                                                                                                                       <  1:282130/127‑1 (MQ=255)
                         gCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATtattat                                                                                                                       >  2:278753/1‑127 (MQ=255)
                         gCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATtattat                                                                                                                       >  2:282130/1‑127 (MQ=255)
                                   aTGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGt                                                                                                <  1:428678/140‑1 (MQ=255)
                                      tATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTg                                                                                             >  1:499358/1‑140 (MQ=255)
                                        ttGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTa                                                                                                      <  2:528883/129‑1 (MQ=255)
                                        ttGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTa                                                                                                      >  1:528883/1‑129 (MQ=255)
                                        ttGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTc                                                                                           >  1:471958/1‑140 (MQ=255)
                                           gTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAg                                                                                        >  2:879552/1‑140 (MQ=255)
                                           gTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAg                                                                                        >  1:575159/1‑140 (MQ=255)
                                               ggTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCgg                                                                                    >  1:648500/1‑140 (MQ=255)
                                                gTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGt                                                                                   >  2:265704/1‑140 (MQ=255)
                                                gTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGt                                                                                   >  1:753255/1‑140 (MQ=255)
                                                       ccaccaACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGc                                                                            >  1:684296/1‑140 (MQ=255)
                                                        caccaACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCt                                                                           <  2:297790/140‑1 (MQ=255)
                                                        caccaACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCt                                                                           >  1:652945/1‑140 (MQ=255)
                                                          ccaACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTg                                                                         >  2:356562/1‑140 (MQ=255)
                                                            aaCGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCt                                                                       <  2:652945/140‑1 (MQ=255)
                                                                  aCTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGa                                                                 >  1:633013/1‑140 (MQ=255)
                                                                    ttACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGAcc                                                               <  1:745868/140‑1 (MQ=255)
                                                                      actacATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGa                                                                 >  1:595575/1‑136 (MQ=255)
                                                                      actacATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGa                                                                 <  2:595575/136‑1 (MQ=255)
                                                                        tacATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGttt                                                           >  1:606184/1‑140 (MQ=255)
                                                                             gTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGcc                                                      >  1:365295/1‑140 (MQ=255)
                                                                             gTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTACTGAGTGACCGTTTTGGcc                                                      >  1:486118/1‑140 (MQ=255)
                                                                                 cTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCcgtcg                                                  >  2:564925/1‑140 (MQ=255)
                                                                                 cTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCcgtcg                                                  <  2:575159/140‑1 (MQ=255)
                                                                                    aCCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTcc                                               <  2:598102/140‑1 (MQ=255)
                                                                                      cTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGt                                             >  1:10488/1‑140 (MQ=255)
                                                                                      cTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGt                                             >  1:375700/1‑140 (MQ=255)
                                                                                           tGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTtgtg                                        <  2:606184/140‑1 (MQ=255)
                                                                                           tGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTtgtg                                        <  1:618752/140‑1 (MQ=255)
                                                                                           tGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTtgtg                                        <  2:375700/140‑1 (MQ=255)
                                                                                           tGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTACTGAGTGACCGTTTTGGCCGTCGTCCGTTtgtg                                        <  2:486118/140‑1 (MQ=255)
                                                                                           ggCCGATTTATTGGTCGCATAACCGGCATTACTCCGATGACCATGGGTTGCGGATTATTATCGCCATTATGAGCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTtgtg                                        <  2:259500/139‑1 (MQ=255)
                                                                                             ccGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCt                                      <  2:633013/140‑1 (MQ=255)
                                                                                             ccGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCt                                      <  1:171604/140‑1 (MQ=255)
                                                                                              cGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTa                                     >  2:347453/1‑140 (MQ=255)
                                                                                              cGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTa                                     <  2:499358/140‑1 (MQ=255)
                                                                                                aGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACt                                   <  1:879552/140‑1 (MQ=255)
                                                                                                 gTTATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACtt                                  >  2:629538/1‑140 (MQ=255)
                                                                                                   tATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTgg                                <  1:564925/140‑1 (MQ=255)
                                                                                                   tATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTgg                                >  1:558419/1‑140 (MQ=255)
                                                                                                   tATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTgg                                <  1:356562/140‑1 (MQ=255)
                                                                                                   tATTTGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTgg                                <  1:347453/140‑1 (MQ=255)
                                                                                                     tttGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTa                              >  1:211503/1‑140 (MQ=255)
                                                                                                       tGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAgt                            >  2:401948/1‑140 (MQ=255)
                                                                                                       tGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAgt                            >  1:567477/1‑140 (MQ=255)
                                                                                                       tGTCGCATAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAgc                            >  1:259500/1‑139 (MQ=255)
                                                                                                             aTAACCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGcc                      <  2:211503/140‑1 (MQ=255)
                                                                                                               aaCCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCt                    >  2:92032/1‑140 (MQ=255)
                                                                                                               aaCCTGCATTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCt                    <  2:57972/140‑1 (MQ=255)
                                                                                                                      aTTACTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCTGTTtgtg             <  1:155176/140‑1 (MQ=255)
                                                                                                                          cTCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCTGTTTGTGTTgg         >  2:55838/1‑140 (MQ=255)
                                                                                                                           tCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCTGTTTGTGTTGGc        <  2:558419/140‑1 (MQ=255)
                                                                                                                           tCCGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCTGTTTGTGTTGGc        >  1:374795/1‑140 (MQ=255)
                                                                                                                           tCCGAAGACAATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTg                        >  2:95410/1‑124 (MQ=255)
                                                                                                                           tCCGAAGACAATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTg                        <  1:95410/124‑1 (MQ=255)
                                                                                                                             cGAAGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCTGTTTGTGTTGGCGa      <  1:147154/140‑1 (MQ=255)
                                                                                                                               aaGACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCTGTTTGTGTTGGCGATc    <  1:92032/140‑1 (MQ=255)
                                                                                                                                 gACCATGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCTGTTTGTGTTGGCGATccc  <  1:401948/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                      
GAGATTGCCACTAAATACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCACGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCTGTTTGTGTTGGCGATCCC  >  NC_000913/4331255‑4331523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A