Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F28 I1 R1	227	52.0	1764248	99.3%	1751898	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,416,352	G→A	intergenic (‑60/+89)	yjfN ← / ← bsmA	protease activator/DUF1471 domain‑containing putative lipoprotein BsmA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,416,352	0	G	A	100.0%	242.6 / NA	71	intergenic (‑60/+89)	yjfN/bsmA	protease activator/DUF1471 domain‑containing putative lipoprotein BsmA
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (30/41); total (30/41)

ATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGA  >  NC_000913/4416217‑4416487

aTTCTGCAGACTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCa                                                                                                                                     <  2:305933/140‑1 (MQ=255)

 ttCTGCAGACTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAg                                                                                                                                    >  1:120599/1‑140 (MQ=255)

 ttCTGCAGACTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTCTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAg                                                                                                                                    >  1:215152/1‑140 (MQ=255)

        gACTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCa                                                                                                                             <  2:763509/140‑1 (MQ=255)

          cTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGc                                                                                                                           <  1:168828/140‑1 (MQ=255)

          cTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGc                                                                                                                           <  2:120599/140‑1 (MQ=255)

          cTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGc                                                                                                                           <  2:110898/140‑1 (MQ=255)

          cTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTCTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGc                                                                                                                           <  2:215152/140‑1 (MQ=255)

            gtgCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCg                                                                                                                         >  2:582943/1‑140 (MQ=255)

            gtgCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCg                                                                                                                         <  1:31522/140‑1 (MQ=255)

             tgCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCgg                                                                                                                        >  2:98822/1‑140 (MQ=255)

             tgCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCgg                                                                                                                        >  2:190197/1‑140 (MQ=255)

             tgCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCgg                                                                                                                        >  1:566513/1‑140 (MQ=255)

              gCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGt                                                                                                                       >  2:771814/1‑140 (MQ=255)

               ccGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTa                                                                                                                      <  1:871707/140‑1 (MQ=255)

                 gTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAAt                                                                                                                    <  1:582943/140‑1 (MQ=255)

                     cgcTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTAt                                                                                                                >  2:679045/1‑140 (MQ=255)

                     cgcTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTAt                                                                                                                >  1:81839/1‑140 (MQ=255)

                       cTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTAtt                                                                                                               >  1:419141/1‑139 (MQ=255)

                       cTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTAtt                                                                                                               <  2:419141/139‑1 (MQ=255)

                       cTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATtg                                                                                                              >  1:856407/1‑140 (MQ=255)

                       cTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATtg                                                                                                              >  1:245825/1‑140 (MQ=255)

                         cGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATtgtg                                                                                                            <  2:232012/140‑1 (MQ=255)

                           cAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGca                                                                                                          <  1:396195/140‑1 (MQ=255)

                           cAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGca                                                                                                          <  2:846514/140‑1 (MQ=255)

                           cAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGca                                                                                                          <  2:856407/140‑1 (MQ=255)

                             ggATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGcaca                                                                                                        <  2:566513/140‑1 (MQ=255)

                                tAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGt                                                                                                     <  1:57811/140‑1 (MQ=255)

                                  aGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTaa                                                                                                   <  1:781502/140‑1 (MQ=255)

                                        tAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTaaa                                                                                                  >  2:31737/1‑135 (MQ=255)

                                        tAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTaaa                                                                                                  <  1:31737/135‑1 (MQ=255)

                                        tAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTaa                                                                                                   <  1:471547/134‑1 (MQ=255)

                                        tAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTaa                                                                                                   >  2:471547/1‑134 (MQ=255)

                                              cAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTaa                                                                                                   <  1:705791/128‑1 (MQ=255)

                                              cAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTaa                                                                                                   >  2:705791/1‑128 (MQ=255)

                                                 cGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCa                                                                                    <  1:218158/140‑1 (MQ=255)

                                                  gAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTaa                                                                                                   >  2:46625/1‑124 (MQ=255)

                                                  gAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTaa                                                                                                   <  1:46625/124‑1 (MQ=255)

                                                    gggTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAg                                                                                 <  1:98822/140‑1 (MQ=255)

                                                    gggTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAg                                                                                 <  2:245825/140‑1 (MQ=255)

                                                    gggTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAg                                                                                 <  2:16345/140‑1 (MQ=255)

                                                      gTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCa                                                                               >  1:868780/1‑140 (MQ=255)

                                                              aGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAg                                                                       <  1:190197/140‑1 (MQ=255)

                                                              aGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAg                                                                       <  1:788557/140‑1 (MQ=255)

                                                                tAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCTAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCt                                                                     <  1:771814/140‑1 (MQ=255)

                                                                     gTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTa                                                                >  2:77675/1‑140 (MQ=255)

                                                                          aTCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTaa                                                           >  1:845413/1‑140 (MQ=255)

                                                                              tCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCt                                                                     >  1:879105/1‑126 (MQ=255)

                                                                              tCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCt                                                                     <  2:879105/126‑1 (MQ=255)

                                                                                aGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTg                                                                    <  2:592604/125‑1 (MQ=255)

                                                                                aGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTg                                                                    >  1:592604/1‑125 (MQ=255)

                                                                                  cTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTg                                                   >  2:427660/1‑140 (MQ=255)

                                                                                    ccATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGat                                                 <  1:679045/140‑1 (MQ=255)

                                                                                        ttttCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGatttat                                             >  2:361783/1‑140 (MQ=255)

                                                                                               ttCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGAtttattta                                          >  1:201557/1‑136 (MQ=255)

                                                                                               ttCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGAtttattta                                          <  2:201557/136‑1 (MQ=255)

                                                                                               ttCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGt                                      <  2:868780/140‑1 (MQ=255)

                                                                                                 ccccACATGTTGCAGGGCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTAc                                    >  2:505072/1‑140 (MQ=255)

                                                                                                                ggCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGaa                     <  2:133966/140‑1 (MQ=255)

                                                                                                                ggCATTCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGaa                     <  1:427660/140‑1 (MQ=255)

                                                                                                                    ttCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATAcc                 >  2:709960/1‑140 (MQ=255)

                                                                                                                     tCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGc                            >  2:267776/1‑128 (MQ=255)

                                                                                                                     tCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGc                            <  1:267776/128‑1 (MQ=255)

                                                                                                                     tCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCa                >  2:142696/1‑140 (MQ=255)

                                                                                                                     tCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCa                <  1:326258/140‑1 (MQ=255)

                                                                                                                     tCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCa                >  1:379566/1‑140 (MQ=255)

                                                                                                                     tCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCa                <  2:81839/140‑1 (MQ=255)

                                                                                                                     tCCATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCa                <  1:850380/140‑1 (MQ=255)

                                                                                                                       cATCGCGGTAATAAACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCAct              <  1:709960/140‑1 (MQ=255)

                                                                                                                                  taaACACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACg   >  2:273615/1‑140 (MQ=255)

                                                                                                                                   aaaCACCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGa  <  1:741990/140‑1 (MQ=255)

ATTCTGCAGACTGTGCCGTGGCGCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGA  >  NC_000913/4416217‑4416487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A