Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A19 F73 I1 R1	26	81.7	2791006	99.4%	2774259	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,248,690	C→A	F240L (TTC→TTA)	lamB →	maltose outer membrane channel/phage lambda receptor protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,248,690	0	C	A	100.0%	262.1 / NA	75	F240L (TTC→TTA)	lamB	maltose outer membrane channel/phage lambda receptor protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (30/45); total (30/45)

ACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCGTTGCATTTGATAACGAAAAATTTGCCT  >  NC_000913/4248554‑4248826

acgTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAAct                                                                                                                                       <  1:1178943/140‑1 (MQ=255)

  gTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAActgc                                                                                                                                     <  2:425815/140‑1 (MQ=255)

  gTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAActgc                                                                                                                                     <  1:194947/140‑1 (MQ=255)

  gTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAActgc                                                                                                                                     <  1:162970/140‑1 (MQ=255)

      tCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGaa                                                                                                                                 <  2:544934/140‑1 (MQ=255)

      tCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGaa                                                                                                                                 <  1:16854/140‑1 (MQ=255)

       cGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAAc                                                                                                                                <  1:268845/140‑1 (MQ=255)

       cGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAAc                                                                                                                                <  2:1336821/140‑1 (MQ=255)

          tgtgCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATa                                                                                                                             <  2:952581/140‑1 (MQ=255)

           gtgCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATAc                                                                                                                            <  1:865140/140‑1 (MQ=255)

             gCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTc                                                                                                                          <  2:949641/140‑1 (MQ=255)

              cGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCa                                                                                                                         <  1:1022313/140‑1 (MQ=255)

              cGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCa                                                                                                                         <  2:503843/140‑1 (MQ=255)

              cGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCa                                                                                                                         <  2:89702/140‑1 (MQ=255)

                tttAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCaga                                                                                                                       <  2:1177107/140‑1 (MQ=255)

                tttAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCaga                                                                                                                       <  1:775248/140‑1 (MQ=255)

                tttAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCaga                                                                                                                       <  2:940010/140‑1 (MQ=255)

                tttAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCaga                                                                                                                       <  2:821542/140‑1 (MQ=255)

                    gcgcAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAgcgt                                                                                                                   >  2:888273/1‑140 (MQ=255)

                            ggAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAgg                                                                                                           <  2:642700/140‑1 (MQ=255)

                               aaTCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCt                                                                                                        >  2:418301/1‑140 (MQ=255)

                               aaTCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCt                                                                                                        >  1:688865/1‑140 (MQ=255)

                                 tCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCttt                                                                                                      <  1:246934/140‑1 (MQ=255)

                                   aaCCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTaa                                                                                                    <  2:528861/140‑1 (MQ=255)

                                    aCCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAAc                                                                                                   >  2:1143920/1‑140 (MQ=255)

                                    aCCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAAc                                                                                                   >  1:1087701/1‑140 (MQ=255)

                                    aCCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAAc                                                                                                   >  1:948166/1‑140 (MQ=255)

                                     cccGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACa                                                                                                  >  2:49676/1‑140 (MQ=255)

                                     cccGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACa                                                                                                  >  2:472425/1‑140 (MQ=255)

                                      ccGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACaa                                                                                                 <  1:506832/140‑1 (MQ=255)

                                        gggCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGt                                                                                               <  2:819490/140‑1 (MQ=255)

                                        gggCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTAAACAAGt                                                                                               >  1:590862/1‑140 (MQ=255)

                                         ggcggcACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGtt                                                                                              >  1:523431/1‑140 (MQ=255)

                                          gcggcACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTACTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGttt                                                                                             >  1:1063323/1‑140 (MQ=255)

                                           cggcACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTttg                                                                                            <  2:788006/140‑1 (MQ=255)

                                                     gAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTa                                                                                  <  2:1366344/140‑1 (MQ=255)

                                                     gAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTa                                                                                  <  1:411709/140‑1 (MQ=255)

                                                     gAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTa                                                                                  <  2:604497/140‑1 (MQ=255)

                                                           ggTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCATAGTGTCCTGAAGGGCTTTAACAAGATTGTTGTTCAGTACGCTAc                                                                            >  1:189070/1‑140 (MQ=255)

                                                           ggTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTgttgtt                                                                                       >  2:140626/1‑129 (MQ=255)

                                                           ggTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTgttgtt                                                                                       <  1:140626/129‑1 (MQ=255)

                                                           ggTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTAc                                                                            >  2:1390428/1‑140 (MQ=255)

                                                             tgtCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTg                                                                          >  1:253665/1‑140 (MQ=255)

                                                             tgtCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTg                                                                          >  2:1175180/1‑140 (MQ=255)

                                                             tgtCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTg                                                                          >  2:801259/1‑140 (MQ=255)

                                                              gtCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGa                                                                         <  1:1052486/140‑1 (MQ=255)

                                                                 gACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTc                                                                      <  1:1297185/140‑1 (MQ=255)

                                                                     aCGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATg                                                                  >  2:334964/1‑140 (MQ=255)

                                                                      cGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGa                                                                 <  1:418301/140‑1 (MQ=255)

                                                                         tCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCt                                                              >  1:1135096/1‑140 (MQ=255)

                                                                         tCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCt                                                              >  2:742458/1‑140 (MQ=255)

                                                                           gTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCg                                                            <  2:285090/140‑1 (MQ=255)

                                                                            tGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGc                                                           <  1:1215326/140‑1 (MQ=255)

                                                                             gCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCa                                                          <  1:1133768/140‑1 (MQ=255)

                                                                             gCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCa                                                          <  1:579400/140‑1 (MQ=255)

                                                                             gCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCa                                                          >  1:841892/1‑140 (MQ=255)

                                                                             gCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCa                                                          <  1:1173200/140‑1 (MQ=255)

                                                                                  cTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTa                                                     >  1:1180853/1‑140 (MQ=255)

                                                                                       gTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAggg                                                <  1:378571/140‑1 (MQ=255)

                                                                                       gTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAggg                                                <  2:688865/140‑1 (MQ=255)

                                                                                           tAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGt                                            >  2:261181/1‑140 (MQ=255)

                                                                                             aCTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCg                                          >  1:566681/1‑140 (MQ=255)

                                                                                             aCTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCg                                          <  2:566681/140‑1 (MQ=255)

                                                                                               tATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCa                                        <  2:1087701/140‑1 (MQ=255)

                                                                                               tATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCa                                        <  1:164344/140‑1 (MQ=255)

                                                                                               tATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCa                                        <  2:431950/140‑1 (MQ=255)

                                                                                                 tCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAgg                                      >  2:222412/1‑140 (MQ=255)

                                                                                                    tCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGtt                                   >  1:111610/1‑140 (MQ=255)

                                                                                                      tGGTTGATGGCGCATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCt                                 >  2:178379/1‑140 (MQ=255)

                                                                                                          tGATGGCGTATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGTCCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCg                             <  2:579985/140‑1 (MQ=255)

                                                                                                                  cATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCGTTGCAttt                     >  1:845774/1‑140 (MQ=255)

                                                                                                                  cATCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCGTTGCAttt                     >  2:1364217/1‑140 (MQ=255)

                                                                                                                    tCGAAAGACGGCTGGTTATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCGTTGCATTTGa                   >  2:310289/1‑140 (MQ=255)

                                                                                                                                   ttattaACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCGTTGCATTTGATAACGAAAAATTTGc    <  1:1185961/140‑1 (MQ=255)

                                                                                                                                    tATTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCGTTGCATTTGATAACGAAAAATTTGcc   <  1:1191639/140‑1 (MQ=255)

                                                                                                                                     aTTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCGTTGCATTTGATAACGAAAAATTTGCCt  <  1:334964/140‑1 (MQ=255)

                                                                                                                                     aTTAACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCGTTGCATTTGATAACGAAAAATTTGCCt  <  2:1041132/140‑1 (MQ=255)

ACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGAACATACTCAGAGTGTCCTGAAGGGCTTTAACAAGTTTGTTGTTCAGTACGCTACTGACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCGTTGCATTTGATAACGAAAAATTTGCCT  >  NC_000913/4248554‑4248826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A