Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F73 I1 R1 30 83.3 2909128 99.3% 2888764 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,109,295 G→T W154C (TGG→TGT)  sbp → sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,109,2950GT100.0% 268.4 / NA 78W154C (TGG→TGT) sbpsulfate/thiosulfate ABC transporter periplasmic binding protein Sbp
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (33/45);  total (33/45)

GTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGGAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGAAGTTCTGGATTCTGGCGCGCGTGGCTCCACTAA  >  NC_000913/4109166‑4109423
                                                                                                                                 |                                                                                                                                
gTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTgg                                                                                                                        <  2:948264/140‑1 (MQ=255)
gTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTgg                                                                                                                        <  1:903998/140‑1 (MQ=255)
gTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTgg                                                                                                                        <  1:619088/140‑1 (MQ=255)
gTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTgg                                                                                                                        <  1:418056/140‑1 (MQ=255)
gTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTgg                                                                                                                        <  1:355367/140‑1 (MQ=255)
 tACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGc                                                                                                                       >  2:971877/1‑140 (MQ=255)
 tACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGc                                                                                                                       >  2:581874/1‑140 (MQ=255)
 tACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGc                                                                                                                       >  1:913145/1‑140 (MQ=255)
 tACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGc                                                                                                                       >  1:821596/1‑140 (MQ=255)
 tACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGc                                                                                                                       >  1:231294/1‑140 (MQ=255)
      ttCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCt                                                                                                                  >  1:211607/1‑140 (MQ=255)
         caccaTTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTggg                                                                                                               >  2:99335/1‑140 (MQ=255)
         caccaTTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTggg                                                                                                               >  1:580925/1‑140 (MQ=255)
           ccaTTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGc                                                                                                             >  2:1236397/1‑140 (MQ=255)
            caTTGTTTTCCTGGTTCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCt                                                                                                            <  1:370345/140‑1 (MQ=255)
             aTTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTa                                                                                                           <  1:101458/140‑1 (MQ=255)
               tGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTAcg                                                                                                         <  2:1259886/140‑1 (MQ=255)
               tGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTAcg                                                                                                         <  1:1236397/140‑1 (MQ=255)
                gTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTAcgc                                                                                                        >  1:1012522/1‑140 (MQ=255)
                gTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGACAGCCTGGGGCTAcgc                                                                                                        >  1:1188904/1‑140 (MQ=255)
                  tttCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACgcgc                                                                                                      <  2:211607/140‑1 (MQ=255)
                       tGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCAt                                                                                                 <  2:1146440/140‑1 (MQ=255)
                       tGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCAt                                                                                                 <  1:608807/140‑1 (MQ=255)
                         gTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCAt                                                                                                 <  2:1443371/138‑1 (MQ=255)
                         gTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCAt                                                                                                 >  1:1443371/1‑138 (MQ=255)
                          tACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATcac                                                                                              <  1:653546/140‑1 (MQ=255)
                           aCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTAcgcg                                                                                                       <  1:1365208/130‑1 (MQ=255)
                           aCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTAcgcg                                                                                                       >  2:1365208/1‑130 (MQ=255)
                              tAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCacaaca                                                                                          >  1:1136785/1‑140 (MQ=255)
                                      aTCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGAt                                                                                  >  1:1315717/1‑140 (MQ=255)
                                       tCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATc                                                                                 >  2:810786/1‑140 (MQ=255)
                                         cGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAg                                                                               >  2:77403/1‑140 (MQ=255)
                                         cGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACACGCTGCATCACAACAACAACGATCAg                                                                               >  1:1103168/1‑140 (MQ=255)
                                          gAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAgg                                                                              <  1:1253314/140‑1 (MQ=255)
                                               aGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCaaaa                                                                         <  1:893634/140‑1 (MQ=255)
                                                      tGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAgg                                                                  >  2:940021/1‑140 (MQ=255)
                                                        aCTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGAt                                                                >  2:238478/1‑140 (MQ=255)
                                                             aaCGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACACCAACGATCAGGCAAAAGCACAGGATTTTGt                                                           >  2:1352493/1‑140 (MQ=255)
                                                               cGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTc                                                         <  1:810786/140‑1 (MQ=255)
                                                                 aTCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCgg                                                       >  2:522804/1‑140 (MQ=255)
                                                                  tCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATTCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCggg                                                      >  2:770067/1‑140 (MQ=255)
                                                                  tCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCggg                                                      <  1:814209/140‑1 (MQ=255)
                                                                  tCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCggg                                                      <  2:1012522/140‑1 (MQ=255)
                                                                    tGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCa                                                    <  2:1315717/140‑1 (MQ=255)
                                                                    tGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCa                                                    <  2:1273421/140‑1 (MQ=255)
                                                                    tGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCa                                                    <  2:231294/140‑1 (MQ=255)
                                                                    tGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCa                                                    <  2:708132/140‑1 (MQ=255)
                                                                    tGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCa                                                    <  2:913145/140‑1 (MQ=255)
                                                                    tGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCa                                                    <  1:174311/140‑1 (MQ=255)
                                                                    tGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCa                                                    <  1:522804/140‑1 (MQ=255)
                                                                    tGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCa                                                    <  2:1220722/140‑1 (MQ=255)
                                                                    tGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCa                                                    <  2:1017731/140‑1 (MQ=255)
                                                                     gATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCAc                                                   <  2:1136785/140‑1 (MQ=255)
                                                                           aCCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGtata                                             >  1:1259843/1‑140 (MQ=255)
                                                                           aCCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGtata                                             >  1:38023/1‑140 (MQ=255)
                                                                             cGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATaaa                                           <  1:462176/140‑1 (MQ=255)
                                                                             cGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATaaa                                           >  2:323234/1‑140 (MQ=255)
                                                                                gtgtTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGTTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAAc                                        >  2:736258/1‑140 (MQ=255)
                                                                                gtgtTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCggg                                                      >  2:785880/1‑126 (MQ=255)
                                                                                gtgtTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCggg                                                      <  1:785880/126‑1 (MQ=255)
                                                                                gtgtTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCggg                                                      >  2:1406358/1‑126 (MQ=255)
                                                                                gtgtTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCggg                                                      <  1:1406358/126‑1 (MQ=255)
                                                                                gtgtTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAAc                                        >  2:479021/1‑140 (MQ=255)
                                                                                    ttCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCg                                    <  1:581874/140‑1 (MQ=255)
                                                                                    ttCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCg                                    <  2:1386648/140‑1 (MQ=255)
                                                                                     tCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGa                                   >  2:1125425/1‑140 (MQ=255)
                                                                                      cGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGaa                                  <  2:38023/140‑1 (MQ=255)
                                                                                      cGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGaa                                  <  1:1211675/140‑1 (MQ=255)
                                                                                      cGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGaa                                  <  2:1259843/140‑1 (MQ=255)
                                                                                      cGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGACAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGaa                                  <  2:1188904/140‑1 (MQ=255)
                                                                                           aTCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGAAGTTCt                             <  1:323234/140‑1 (MQ=255)
                                                                                                    aaTCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGAAGTTCTGGATTCTgg                    <  1:99335/140‑1 (MQ=255)
                                                                                                     aTCCGAAAAGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGAAGTTCTGGATTCTGgc                   >  2:629101/1‑140 (MQ=255)
                                                                                                             aGCTCTGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGAAGTTCTGGATTCTGGCGCGCGTgg           <  2:719290/140‑1 (MQ=255)
                                                                                                                tctGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGAAGTTCTGGATTCTGGCGCGCGTGGCTc        <  1:629101/140‑1 (MQ=255)
                                                                                                                 ctGGTGGCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGAAGTTCTGGATTCTGGCGCGCGTGGCTcc       >  2:435927/1‑140 (MQ=255)
                                                                                                                    gtggCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGAAGTTCTGGATTCTGGCGCGCGTGGCTCCACt    <  2:85632/140‑1 (MQ=255)
                                                                                                                      ggCGCGCGCTGTAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGAAGTTCTGGATTCTGGCGCGCGTGGCTCCACTaa  <  1:1125425/140‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                
GTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGCGCGCGCTGGAACTACCTGGCAGCCTGGGGCTACGCGCTGCATCACAACAACAACGATCAGGCAAAAGCACAGGATTTTGTTCGGGCACTGTATAAAAACGTCGAAGTTCTGGATTCTGGCGCGCGTGGCTCCACTAA  >  NC_000913/4109166‑4109423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A