Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F73 I1 R1	26	65.3	2245954	99.3%	2230232	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,176,992	G→T	R97S (CGC→AGC)	yqiB ←	DUF1249 domain‑containing protein YqiB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,176,992	0	G	T	100.0%	288.8 / NA	81	R97S (CGC→AGC)	yqiB	DUF1249 domain‑containing protein YqiB
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (42/39); total (42/39)

GCTAATAAACCGGAATCGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCGAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTATCGGGTC  >  NC_000913/3176857‑3177125

gCTAATAAACCGGAATCGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTaaaa                                                                                                                                   >  2:1066562/1‑140 (MQ=255)

          cGGAATCGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGc                                                                                                                         >  1:1007771/1‑140 (MQ=255)

          cGGAATCGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGc                                                                                                                         >  1:1043261/1‑140 (MQ=255)

          cGGAATCGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGc                                                                                                                         <  1:339304/140‑1 (MQ=255)

            gAATCGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGc                                                                                                                         >  2:640756/1‑138 (MQ=255)

            gAATCGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGc                                                                                                                         <  1:640756/138‑1 (MQ=255)

            gAATCGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCtt                                                                                                                       >  2:688732/1‑140 (MQ=255)

            gAATCGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCtt                                                                                                                       >  2:844979/1‑140 (MQ=255)

            gAATCGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCtt                                                                                                                       >  1:1097160/1‑140 (MQ=255)

            gAATCGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCtt                                                                                                                       >  2:1110465/1‑140 (MQ=255)

               tCGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGaa                                                                                                                    <  1:88734/140‑1 (MQ=255)

                cGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAac                                                                                                                   <  1:1066562/140‑1 (MQ=255)

                cGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAac                                                                                                                   >  2:644626/1‑140 (MQ=255)

                 gCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAaca                                                                                                                  <  1:149587/140‑1 (MQ=255)

                   cATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAacaca                                                                                                                <  1:535792/140‑1 (MQ=255)

                     tCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACt                                                                                                              <  2:869503/140‑1 (MQ=255)

                       gCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACGTTTTATTAGGATAATCATGCCGCGCTTTGAAGCTGAAAATCTGCTGGGTTGAACACGCTTc                                                                                                            <  2:648175/140‑1 (MQ=255)

                        cTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCa                                                                                                           >  2:835264/1‑140 (MQ=255)

                             tgtgCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGaa                                                                                                                    <  1:767253/126‑1 (MQ=255)

                             tgtgCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGaa                                                                                                                    >  2:767253/1‑126 (MQ=255)

                                gCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCAt                                                                                                   <  1:952922/140‑1 (MQ=255)

                                  tAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATcg                                                                                                 <  2:60040/140‑1 (MQ=255)

                                  tAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATcg                                                                                                 <  2:101726/140‑1 (MQ=255)

                                    aaCAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATcgcg                                                                                               <  2:545696/140‑1 (MQ=255)

                                    aaCAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATcgcg                                                                                               >  2:926103/1‑140 (MQ=255)

                                     aCAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGt                                                                                              <  2:1007771/140‑1 (MQ=255)

                                     aCAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGt                                                                                              <  1:644626/140‑1 (MQ=255)

                                      cAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTc                                                                                             <  2:1097160/140‑1 (MQ=255)

                                       aGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCa                                                                                            <  1:672870/140‑1 (MQ=255)

                                       aGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCa                                                                                            <  1:688732/140‑1 (MQ=255)

                                         tATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATg                                                                                          >  2:529845/1‑140 (MQ=255)

                                         tATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATg                                                                                          >  1:408959/1‑140 (MQ=255)

                                         tATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATg                                                                                          >  1:1052391/1‑140 (MQ=255)

                                         tATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAAGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATg                                                                                          >  2:408884/1‑140 (MQ=255)

                                           tCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGAt                                                                                        >  2:714385/1‑140 (MQ=255)

                                              cAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATcgcg                                                                                               >  2:244685/1‑130 (MQ=255)

                                              cAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATcgcg                                                                                               <  1:244685/130‑1 (MQ=255)

                                              cAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACa                                                                                     >  1:649286/1‑140 (MQ=255)

                                              cAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACAAACTTCAGCCACCATCGCGTCATGATACa                                                                                     >  2:1015520/1‑140 (MQ=255)

                                                aCCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGa                                                                                   <  2:865159/140‑1 (MQ=255)

                                                aCCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTCTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGa                                                                                   >  1:151642/1‑140 (MQ=255)

                                                    gTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCa                                                                               <  1:774517/140‑1 (MQ=255)

                                                     tCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCAc                                                                              <  1:437685/140‑1 (MQ=255)

                                                      ccGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCAcc                                                                             <  1:844979/140‑1 (MQ=255)

                                                      ccGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCAcc                                                                             <  2:1052391/140‑1 (MQ=255)

                                                          tAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCa                                                                         <  2:938493/140‑1 (MQ=255)

                                                                 tGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACgg                                                                  >  2:1100378/1‑140 (MQ=255)

                                                                    ttAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAg                                                               <  1:529845/140‑1 (MQ=255)

                                                                    ttAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAg                                                               <  1:287706/140‑1 (MQ=255)

                                                                      aaTTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGc                                                             <  2:408959/140‑1 (MQ=255)

                                                                                 tttCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTg                                                  >  2:535750/1‑140 (MQ=255)

                                                                                  ttCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGc                                                             >  1:899731/1‑128 (MQ=255)

                                                                                  ttCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGc                                                             <  2:899731/128‑1 (MQ=255)

                                                                                  ttCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGa                                                 >  2:144043/1‑140 (MQ=255)

                                                                                         cgTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCggg                                          >  1:940478/1‑140 (MQ=255)

                                                                                         cgTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCggg                                          <  1:1093836/140‑1 (MQ=255)

                                                                                          gTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGgc                                         <  1:926103/140‑1 (MQ=255)

                                                                                           ttGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGgcg                                        <  1:1110465/140‑1 (MQ=255)

                                                                                           ttGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGgcg                                        <  1:905785/140‑1 (MQ=255)

                                                                                             gATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCa                                      <  1:1015520/140‑1 (MQ=255)

                                                                                               tGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGt                                    <  2:699759/140‑1 (MQ=255)

                                                                                                    cTTTTTATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACGCACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGtt                               <  2:940478/140‑1 (MQ=255)

                                                                                                      ttttATTAGGATAATCATACCGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCt                             >  1:673186/1‑140 (MQ=255)

                                                                                                                         ccGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAgtgt          >  2:475847/1‑140 (MQ=255)

                                                                                                                         ccGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAgtgt          >  1:438751/1‑140 (MQ=255)

                                                                                                                         ccGCGCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAgtgt          >  1:475089/1‑140 (MQ=255)

                                                                                                                          cgcgCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCa                   >  2:452429/1‑130 (MQ=255)

                                                                                                                          cgcgCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCa                   <  1:452429/130‑1 (MQ=255)

                                                                                                                          cgcgCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTa         >  2:415470/1‑140 (MQ=255)

                                                                                                                          cgcgCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTa         >  2:1090923/1‑140 (MQ=255)

                                                                                                                          cgcgCTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTa         >  1:89859/1‑140 (MQ=255)

                                                                                                                            cgcTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTATc       >  2:1101314/1‑140 (MQ=255)

                                                                                                                             gcTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTATCg      >  1:1011419/1‑140 (MQ=255)

                                                                                                                              cTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTATCgg     >  2:649914/1‑140 (MQ=255)

                                                                                                                              cTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTATCgg     >  2:901143/1‑140 (MQ=255)

                                                                                                                              cTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTATCgg     >  1:346731/1‑140 (MQ=255)

                                                                                                                              cTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTATCgg     >  1:209228/1‑140 (MQ=255)

                                                                                                                              cTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTATCg      >  1:545648/1‑139 (MQ=255)

                                                                                                                              cTTTGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTATCg      <  2:545648/139‑1 (MQ=255)

                                                                                                                               tttGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTATCggg    >  1:641072/1‑140 (MQ=255)

                                                                                                                                ttGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTATCGGGt   <  2:1043261/140‑1 (MQ=255)

                                                                                                                                 tGAAGCTAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTATCGGGTc  <  2:89859/140‑1 (MQ=255)

GCTAATAAACCGGAATCGCCATCGCTCCATGTGCTAAACAGTATCGCAACCAGTCCGCTAAAAACTGATTAATTTGATGCTTTTCGTCGCGTTGATGCAACTTTTTATTAGGATAATCATACCGCGCTTTGAAGCGAAAAATCTGCTGGCTTGAACACACTTCAGCCACCATCGCGTCATGATACAGACGCACCGTCATTGACGGAAGGCTCCAGTAACTGATCGCGGGCGCAGTCTGTTCTATTGTCACCAGGGTAGTGTATCGGGTC  >  NC_000913/3176857‑3177125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A