Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F73 I1 R1 26 65.3 2245954 99.3% 2230232 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,448,543 G→T E33* (GAG→TAG)  chpS → ChpS antitoxin of the ChpB‑ChpS toxin‑antitoxin system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,448,5430GT97.3% 252.0 / ‑1.5 74E33* (GAG→TAG) chpSChpS antitoxin of the ChpB‑ChpS toxin‑antitoxin system
Reads supporting (aligned to +/- strand):  ref base G (2/0);  new base T (39/33);  total (41/33)
Fisher's exact test for biased strand distribution p-value = 4.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

CCGTGAGTTATACTTTGTATAACTTAAGGAGGTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGGAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTGGGGTAAATCCACCCC  >  NC_000913/4448410‑4448676
                                                                                                                                     |                                                                                                                                     
ccGTGAGTTATACTTTGTATAACTTAAGGAGGTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGgcgc                                                                                                                                 >  2:729461/1‑140 (MQ=255)
       ttATACTTTGTATAACTTAAGGAGGTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAg                                                                                                                          <  1:323286/140‑1 (MQ=255)
          nnntttGTATAACTTAAGGAGGTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGcaa                                                                                                                       <  2:663790/137‑1 (MQ=255)
               tGTATATCTTAAGGAGGTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATc                                                                                                                  >  1:57316/1‑140 (MQ=255)
               tGTATAACTTAAGGAGGTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATc                                                                                                                  >  1:905530/1‑140 (MQ=255)
               tGTATAACTTAAGGAGGTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATc                                                                                                                  >  1:110535/1‑140 (MQ=255)
               tGTATAACTTAAGGAGGTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATc                                                                                                                  >  2:833468/1‑140 (MQ=255)
               tGTATAACTTAAGGAGGTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATc                                                                                                                  >  1:729941/1‑140 (MQ=255)
               tGTATAACTTAAGGAGGTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATc                                                                                                                  >  2:136823/1‑140 (MQ=255)
                 tataACTTAAGGAGGTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGGAGGCGCAAGTGAGCAACAATCaa                                                                                                                >  1:913080/1‑140 (MQ=255)
                           ggaggTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGa                                                                                                      <  1:805203/140‑1 (MQ=255)
                           ggaggTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGa                                                                                                      >  2:59750/1‑140 (MQ=255)
                           ggaggTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGa                                                                                                      <  1:59750/140‑1 (MQ=255)
                              ggTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGacac                                                                                                   <  1:291020/140‑1 (MQ=255)
                                tGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCt                                                                                                        >  2:624099/1‑133 (MQ=255)
                                tGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCt                                                                                                        <  1:624099/133‑1 (MQ=255)
                                tGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACAccc                                                                                                 >  1:938635/1‑140 (MQ=255)
                                tGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACAccc                                                                                                 <  1:91896/140‑1 (MQ=255)
                                tGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACAccc                                                                                                 >  1:500769/1‑140 (MQ=255)
                                 gCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCa                                                                                                >  1:709927/1‑140 (MQ=255)
                                 gCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGGAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCa                                                                                                >  1:552621/1‑140 (MQ=255)
                                       gCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCAtctc                                                                                            <  2:669738/138‑1 (MQ=255)
                                       gCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCAtctc                                                                                            >  1:669738/1‑138 (MQ=255)
                                         gTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAgg                                                                                        <  1:650505/140‑1 (MQ=255)
                                         gTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAgg                                                                                        <  1:589549/140‑1 (MQ=255)
                                         gTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGAGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAgg                                                                                        >  1:549952/1‑140 (MQ=255)
                                          tATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGgc                                                                                       >  1:195143/1‑140 (MQ=255)
                                           aTTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGgcg                                                                                      <  2:909914/140‑1 (MQ=255)
                                               ccATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTAc                                                                                  >  2:569091/1‑140 (MQ=255)
                                                 aTAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTc                                                                                <  2:709927/140‑1 (MQ=255)
                                                  tAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGTGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCg                                                                               >  1:808454/1‑140 (MQ=255)
                                                   aaaaaGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGc                                                                              >  1:96821/1‑140 (MQ=255)
                                                         aTGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTtgatg                                                                        <  2:332242/140‑1 (MQ=255)
                                                         aTGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGAGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTtgatg                                                                        <  2:549952/140‑1 (MQ=255)
                                                          tGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTtgatga                                                                       >  2:751749/1‑140 (MQ=255)
                                                          tGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTtgatga                                                                       <  2:96821/140‑1 (MQ=255)
                                                          tGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTtgatga                                                                       >  1:1027545/1‑140 (MQ=255)
                                                          tGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTtgatga                                                                       >  1:566630/1‑140 (MQ=255)
                                                          tGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTtgatga                                                                       <  1:680465/140‑1 (MQ=255)
                                                            ggggAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAAc                                                                     >  2:895763/1‑140 (MQ=255)
                                                            ggggAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAAc                                                                     <  2:1117989/140‑1 (MQ=255)
                                                             gggAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAAct                                                                    >  2:960306/1‑140 (MQ=255)
                                                                  cAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTgg                                                               <  2:729941/140‑1 (MQ=255)
                                                                   aGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGc                                                              <  1:895763/140‑1 (MQ=255)
                                                                    gTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGca                                                             <  1:203017/140‑1 (MQ=255)
                                                                    gTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGca                                                             <  1:569091/140‑1 (MQ=255)
                                                                     tGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGcac                                                            <  1:960306/140‑1 (MQ=255)
                                                                               gTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACAt                                                  >  2:31760/1‑140 (MQ=255)
                                                                               gTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACAt                                                  >  1:664371/1‑140 (MQ=255)
                                                                               gTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACAt                                                  >  1:387369/1‑140 (MQ=255)
                                                                               gTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACAt                                                  >  2:1040359/1‑140 (MQ=255)
                                                                               gTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATAAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACAt                                                  >  2:775246/1‑140 (MQ=255)
                                                                                 cATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGa                                                >  2:507412/1‑140 (MQ=255)
                                                                                    tCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAAcg                                             >  1:704892/1‑140 (MQ=255)
                                                                                     cccAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAAcgc                                            >  1:1087626/1‑140 (MQ=255)
                                                                                       cAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAAcgccg                                          <  2:57316/140‑1 (MQ=255)
                                                                                               tAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACtt                                  >  2:1038990/1‑140 (MQ=255)
                                                                                                aaTGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTa                                 >  1:1017895/1‑140 (MQ=255)
                                                                                                 aTGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAg                                <  2:938635/140‑1 (MQ=255)
                                                                                                  tGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGc                               >  1:500802/1‑140 (MQ=255)
                                                                                                      aGAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGc                           >  1:734141/1‑140 (MQ=255)
                                                                                                       gAACTTAACTTACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCT‑CAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAg                         <  2:905530/140‑1 (MQ=255)
                                                                                                        aacttaacttACAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAg                         <  1:133540/140‑1 (MQ=255)
                                                                                                         acttaacttaCAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAgg                        <  1:833468/140‑1 (MQ=255)
                                                                                                              acttaCAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTc                   <  2:323495/140‑1 (MQ=255)
                                                                                                               cttaCAGCCGGGGCAGAGCGTGTAGGTGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCt                  <  2:808454/140‑1 (MQ=255)
                                                                                                                  aCAGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTggg               <  2:1027545/140‑1 (MQ=255)
                                                                                                                    aGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTGGGGt             >  1:92977/1‑140 (MQ=255)
                                                                                                                    aGCCGGGGCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTGGGGt             >  2:1089300/1‑140 (MQ=255)
                                                                                                                          ggCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTggg               >  1:958511/1‑132 (MQ=255)
                                                                                                                          ggCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTggg               <  2:958511/132‑1 (MQ=255)
                                                                                                                          ggCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTGGGGTAAATcc       <  1:729461/140‑1 (MQ=255)
                                                                                                                          ggCAGAGCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTGGGGTAAATcc       <  1:751749/140‑1 (MQ=255)
                                                                                                                               agCGTGTAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTGGGGTAAATCCAcccc  >  2:771559/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                     
CCGTGAGTTATACTTTGTATAACTTAAGGAGGTGCAGATGCGTATTACCATAAAAAGATGGGGGAACAGTGCAGGTATGGTCATTCCCAATATCGTAATGAAAGAACTTAACTTACAGCCGGGGCAGAGCGTGGAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATGAACTGCTGGCACAGTGTGACATGAACGCCGCGGAACTTAGCGAGCAGGATGTCTGGGGTAAATCCACCCC  >  NC_000913/4448410‑4448676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A