Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F73 I1 R1 37 152.5 5346736 99.2% 5303962 139.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,008,372 G→T G288V (GGC→GTC)  ygeX → 2,3‑diaminopropionate ammonia‑lyase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,008,3720GT100.0% 406.7 / NA 116G288V (GGC→GTC) ygeX2,3‑diaminopropionate ammonia‑lyase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (53/63);  total (53/63)

Only 100 of 125 total aligned reads displayed.

TATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGTGCTGGGTAATCCGTACGGCAACGACCCGC  >  NC_000913/3008236‑3008506
                                                                                                                                        |                                                                                                                                      
tATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAgtcct                                                                                                                                     <  1:1248/140‑1 (MQ=255)
tATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAgtcct                                                                                                                                     >  2:1547307/1‑140 (MQ=255)
  tCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAgtcctgg                                                                                                                                   >  1:383053/1‑140 (MQ=255)
  tCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAgtcctgg                                                                                                                                   >  2:888755/1‑140 (MQ=255)
       tCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCtgt                                                                                                                              >  2:1798037/1‑140 (MQ=255)
         gACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTgg                                                                                                                            <  1:695135/140‑1 (MQ=255)
         gACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTgg                                                                                                                            <  2:1624560/140‑1 (MQ=255)
         gACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTgg                                                                                                                            <  1:888349/140‑1 (MQ=255)
            gTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCACCGTTGGCGGTGATATGGCCACCATCATGACAGTCCTGGCCTGTGGCGa                                                                                                                         <  2:201496/140‑1 (MQ=255)
            gTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGa                                                                                                                         <  1:1624159/140‑1 (MQ=255)
            gTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGa                                                                                                                         >  1:817154/1‑140 (MQ=255)
               tataGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGa                                                                                                                         <  2:624355/137‑1 (MQ=255)
               tataGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGa                                                                                                                         >  1:624355/1‑137 (MQ=255)
                 taGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTa                                                                                                                    <  2:893604/140‑1 (MQ=255)
                   gCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAAc                                                                                                                  <  2:2614690/140‑1 (MQ=255)
                      cGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACGTCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCg                                                                                                               <  2:1894050/140‑1 (MQ=255)
                      cGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCg                                                                                                               <  2:1129990/140‑1 (MQ=255)
                      cGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCg                                                                                                               <  2:1186526/140‑1 (MQ=255)
                      cGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCg                                                                                                               <  2:2153371/140‑1 (MQ=255)
                      cGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCg                                                                                                               >  1:67958/1‑140 (MQ=255)
                      cGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCg                                                                                                               <  1:2236638/140‑1 (MQ=255)
                      cGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCg                                                                                                               >  1:349335/1‑140 (MQ=255)
                        cAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCgct                                                                                                             >  2:2399243/1‑140 (MQ=255)
                        cAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCgct                                                                                                             >  1:397518/1‑140 (MQ=255)
                        cAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCgct                                                                                                             >  1:2246809/1‑140 (MQ=255)
                           aaTCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCgctggg                                                                                                          <  2:817154/140‑1 (MQ=255)
                           aaTCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCgctggg                                                                                                          <  1:2469611/140‑1 (MQ=255)
                                   caGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGGGGTGATATGGCCGCCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGaaa                                                                                                  <  2:196557/140‑1 (MQ=255)
                                   caGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGaaa                                                                                                  <  1:675517/140‑1 (MQ=255)
                                   caGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGaaa                                                                                                  <  1:1232330/140‑1 (MQ=255)
                                    aGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAAt                                                                                                 <  2:1412470/140‑1 (MQ=255)
                                    aGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAAt                                                                                                 <  2:2039046/140‑1 (MQ=255)
                                     gCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATc                                                                                                <  1:329267/140‑1 (MQ=255)
                                      cATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATcc                                                                                               >  2:2451844/1‑140 (MQ=255)
                                         tattGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTAc                                                                                            >  1:942378/1‑140 (MQ=255)
                                            tgttgAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTa                                                                                         <  2:331514/140‑1 (MQ=255)
                                             gttgAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTaa                                                                                        <  1:1268769/140‑1 (MQ=255)
                                              ttgAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAAc                                                                                       >  1:2179232/1‑140 (MQ=255)
                                                gAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTg                                                                                     >  2:1803461/1‑140 (MQ=255)
                                                gAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTg                                                                                     <  1:1547307/140‑1 (MQ=255)
                                                gAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTg                                                                                     >  1:1711385/1‑140 (MQ=255)
                                                gAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTg                                                                                     >  1:1290902/1‑140 (MQ=255)
                                                gAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTg                                                                                     >  2:282337/1‑140 (MQ=255)
                                                  aCCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCGGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTgcg                                                                                   <  2:375810/140‑1 (MQ=255)
                                                  aCCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTgcg                                                                                   >  2:1987566/1‑140 (MQ=255)
                                                  aCCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTgcg                                                                                   <  1:888755/140‑1 (MQ=255)
                                                   ccTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTgcgc                                                                                  >  1:1147936/1‑140 (MQ=255)
                                                     tGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCa                                                                                <  1:609474/140‑1 (MQ=255)
                                                     tGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCa                                                                                <  1:491864/140‑1 (MQ=255)
                                                     tGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCa                                                                                <  2:2062280/140‑1 (MQ=255)
                                                      gACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGGAACTGCGCCAc                                                                               >  2:1437696/1‑140 (MQ=255)
                                                        cAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCAccc                                                                             >  2:585681/1‑140 (MQ=255)
                                                            gCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAAtt                                                                         >  1:272954/1‑140 (MQ=255)
                                                            gCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAAtt                                                                         <  1:422169/140‑1 (MQ=255)
                                                                aCTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCAtc                                                                     >  1:1315846/1‑140 (MQ=255)
                                                                 cTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCAtct                                                                    <  1:751650/140‑1 (MQ=255)
                                                                 cTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCAtct                                                                    <  1:920543/140‑1 (MQ=255)
                                                                 cTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCAtct                                                                    <  1:2368418/140‑1 (MQ=255)
                                                                    tATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCt                                                                 <  1:863410/140‑1 (MQ=255)
                                                                     aTTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTg                                                                >  1:297695/1‑140 (MQ=255)
                                                                       ttATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGcc                                                              >  2:2130856/1‑140 (MQ=255)
                                                                         aTCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAg                                                            >  2:714132/1‑140 (MQ=255)
                                                                          tCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAgg                                                           <  2:40420/140‑1 (MQ=255)
                                                                           cGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCGACCCAATTCATCTCCTGCCAGGa                                                          >  1:466854/1‑140 (MQ=255)
                                                                           cGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGa                                                          >  1:1774702/1‑140 (MQ=255)
                                                                           cGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGa                                                          >  2:2362820/1‑140 (MQ=255)
                                                                            gCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCAtct                                                                    <  2:1214227/129‑1 (MQ=255)
                                                                            gCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCAtct                                                                    >  1:1214227/1‑129 (MQ=255)
                                                                              tCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAg                                                       >  2:887809/1‑140 (MQ=255)
                                                                              tCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAg                                                       >  1:1154061/1‑140 (MQ=255)
                                                                              tCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAg                                                       >  2:2621566/1‑140 (MQ=255)
                                                                              tCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAg                                                       >  2:306246/1‑140 (MQ=255)
                                                                              tCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAg                                                       >  1:217447/1‑140 (MQ=255)
                                                                              tCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAg                                                       >  1:2256780/1‑140 (MQ=255)
                                                                              tCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAg                                                       <  1:2290183/140‑1 (MQ=255)
                                                                                cGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCg                                                     >  2:950940/1‑140 (MQ=255)
                                                                                cGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCg                                                     <  2:1683529/140‑1 (MQ=255)
                                                                                  gCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGtt                                                   <  1:585681/140‑1 (MQ=255)
                                                                                  gCGTCAAAGGCGACATCGTCAACGTTAGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGtt                                                   <  2:236646/140‑1 (MQ=255)
                                                                                    gTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGc                                                 <  1:2621566/140‑1 (MQ=255)
                                                                                        aaGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCa                                             <  1:1465101/140‑1 (MQ=255)
                                                                                        aaGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCa                                             <  1:282337/140‑1 (MQ=255)
                                                                                            cGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAg                                         >  1:1733211/1‑140 (MQ=255)
                                                                                             gACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAgg                                        <  1:77504/140‑1 (MQ=255)
                                                                                              aCATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGt                                       <  1:1987566/140‑1 (MQ=255)
                                                                                                      aaCGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCGACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGt                               <  2:466854/140‑1 (MQ=255)
                                                                                                      aaCGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGt                               <  2:1774702/140‑1 (MQ=255)
                                                                                                      aaCGTTGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGt                               <  1:2130856/140‑1 (MQ=255)
                                                                                                           tGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGTGCTgg                          >  1:597399/1‑140 (MQ=255)
                                                                                                           tGGCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAAGTATGCGCGTGCTgg                          >  2:665336/1‑140 (MQ=255)
                                                                                                            ggCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGTGCTggg                         >  2:1206352/1‑140 (MQ=255)
                                                                                                             gCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGTGCTGGGt                        <  1:1798037/140‑1 (MQ=255)
                                                                                                             gCGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGTGCTGGGt                        >  1:1792808/1‑140 (MQ=255)
                                                                                                              cGGTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGTGCTGGGTa                       <  2:597399/140‑1 (MQ=255)
                                                                                                                gTGATATGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGTGCTGGGTAAt                     <  2:349335/140‑1 (MQ=255)
                                                                                                                     atGGCCACCATCATGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGTGCTGGGTAATCCGTa                <  1:69953/140‑1 (MQ=255)
                                                                                                                             catcatGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGTGCTGGGTAATCCGTACGGCAACg        >  1:2512752/1‑140 (MQ=255)
                                                                                                                              atcatGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGTGCTGGGTAATCCGTACGGCAACGa       >  2:2037717/1‑140 (MQ=255)
                                                                                                                                 atGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGTGCTGGGTAATCCGTACGGCAACGAccc    <  1:2399243/140‑1 (MQ=255)
                                                                                                                                  tGGCAGTCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGTGCTGGGTAATCCGTACGGCAACGACCcg   >  1:2366361/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                      
TATCTGGTCGACGTCTATAGCCCGCAAAATCTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAACTGCGCCACCCAATTCATCTCCTGCCAGGACAGCGTTGCCGCATTAGGTATGCGCGTGCTGGGTAATCCGTACGGCAACGACCCGC  >  NC_000913/3008236‑3008506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A