Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F73 I1 R1 34 113.1 3988162 99.3% 3960244 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,019,683 C→A R175S (CGT→AGT)  ssnA → putative aminohydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,019,6830CA98.9% 326.7 / NA 94R175S (CGT→AGT) ssnAputative aminohydrolase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base A (47/46);  minor base T (1/0);  total (48/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGTATATCGGCGGGTCGCTCTCCACATTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCCGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTGAAGCCGTGAAAGCCAC  >  NC_000913/3019549‑3019819
                                                                                                                                      |                                                                                                                                         
cGTATATCGGCGGGTCGCTCTCCACATTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTc                                                                                                                                      <  1:24325/140‑1 (MQ=255)
    tatCGGCGGGTCGCTCTCCACATTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑ccc                                                                                                                                 <  1:704479/140‑1 (MQ=255)
    tatCGGCGGGTCGCTCTCCACATTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑ccc                                                                                                                                 <  1:865024/140‑1 (MQ=255)
     atCGGCGGGTCGCTCTCCACATTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCg                                                                                                                                <  1:1990463/140‑1 (MQ=255)
     atCGGCGGGTCGCTCTCCACATTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCg                                                                                                                                <  1:1626664/140‑1 (MQ=255)
             gTCGCTCTCCACATTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTttgattg                                                                                                                        <  1:1549656/140‑1 (MQ=255)
               cGCTCTCCACATTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTATAGAAGAAAACATAAGTTTCG‑CACGTTtgattgat                                                                                                                      <  2:614010/140‑1 (MQ=255)
                     ccACATTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCg                                                                                                                <  2:1921911/140‑1 (MQ=255)
                     ccACATTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCg                                                                                                                <  1:1750946/140‑1 (MQ=255)
                     ccACATTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCg                                                                                                                <  2:1320061/140‑1 (MQ=255)
                       acaTTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGG‑‑GGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCgaaga                                                                                                            >  1:41353/1‑140 (MQ=255)
                        caTTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCgaag                                                                                                             <  1:1981267/140‑1 (MQ=255)
                         aTTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCgaaga                                                                                                            <  1:1208778/140‑1 (MQ=255)
                         aTTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCg                                                                                                                <  1:1476143/136‑1 (MQ=255)
                         aTTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCg                                                                                                                >  2:1476143/1‑136 (MQ=255)
                            gcgcGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAg                                                                                                         >  2:181789/1‑140 (MQ=255)
                            gcgcGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAg                                                                                                         >  1:1919389/1‑140 (MQ=255)
                             cgcgACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTtgattgat                                                                                                                      >  2:167062/1‑126 (MQ=255)
                             cgcgACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTtgattgat                                                                                                                      <  1:167062/126‑1 (MQ=255)
                              gcgACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCg                                                                                                       >  2:492030/1‑140 (MQ=255)
                              gcgACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCg                                                                                                       >  2:1513523/1‑140 (MQ=255)
                                gACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGAc                                                                                                     >  2:436489/1‑140 (MQ=255)
                                gACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGAc                                                                                                     >  1:1110712/1‑140 (MQ=255)
                                  cGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCGCCCCGTTTGATTGATGAGGCGAAGAAAGCGACa                                                                                                    >  1:1359306/1‑140 (MQ=255)
                                  cGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACaa                                                                                                   >  2:1853241/1‑140 (MQ=255)
                                   gCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAg                                                                                                  <  1:1853241/140‑1 (MQ=255)
                                    cATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACACCGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGc                                                                                                 <  1:885391/140‑1 (MQ=255)
                                    cATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGc                                                                                                 <  1:1645884/140‑1 (MQ=255)
                                     aTTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCg                                                                                                >  1:972393/1‑140 (MQ=255)
                                      tttttAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGa                                                                                               <  2:1211888/140‑1 (MQ=255)
                                       ttttAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAg                                                                                              <  1:1492366/140‑1 (MQ=255)
                                        tttAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCTACAAGCGAGc                                                                                             <  1:181789/140‑1 (MQ=255)
                                           aaaaGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGt                                                                                          <  1:1172590/140‑1 (MQ=255)
                                           aaaaGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGt                                                                                          >  1:575781/1‑140 (MQ=255)
                                             aaGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTAt                                                                                        <  2:320847/140‑1 (MQ=255)
                                               gTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCt                                                                                      <  1:1449775/140‑1 (MQ=255)
                                                 tGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCtgg                                                                                    >  1:1715410/1‑140 (MQ=255)
                                                 tGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCtgg                                                                                    >  2:1959049/1‑140 (MQ=255)
                                                 tGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCtgg                                                                                    <  1:498811/140‑1 (MQ=255)
                                                 tGGCCTGCGCGCGATGACCTGTGTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCtgg                                                                                    >  2:1374939/1‑140 (MQ=255)
                                                   gCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGcc                                                                                            <  1:1730264/130‑1 (MQ=255)
                                                   gCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGcc                                                                                            >  2:1729363/1‑130 (MQ=255)
                                                   gCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGcc                                                                                            <  1:1729363/130‑1 (MQ=255)
                                                   gCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGcc                                                                                            >  2:1730264/1‑130 (MQ=255)
                                                   gCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCtggtg                                                                                  >  1:1188195/1‑140 (MQ=255)
                                                    ccTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCtggtgg                                                                                 <  2:100148/140‑1 (MQ=255)
                                                    ccTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCtggtgg                                                                                 <  1:187062/140‑1 (MQ=255)
                                                    ccTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCtggtgg                                                                                 <  1:1415576/140‑1 (MQ=255)
                                                    ccTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCtggtgg                                                                                 <  1:489122/140‑1 (MQ=255)
                                                    ccTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCtggtgg                                                                                 <  1:1653358/140‑1 (MQ=255)
                                                      tGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGaa                                                                               <  2:786499/140‑1 (MQ=255)
                                                      tGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGaa                                                                               <  2:1188195/140‑1 (MQ=255)
                                                                     gTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCt                                                                >  1:936161/1‑140 (MQ=255)
                                                                        ttGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCAc                                                             <  1:553071/140‑1 (MQ=255)
                                                                         tGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCAcg                                                            <  1:1599712/140‑1 (MQ=255)
                                                                         tGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCAcg                                                            <  2:936161/140‑1 (MQ=255)
                                                                           aaaCTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCTGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCAcgcg                                                          >  2:1109654/1‑140 (MQ=255)
                                                                                actGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGtt                                                     >  2:1121852/1‑140 (MQ=255)
                                                                                actGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGtt                                                     >  2:190986/1‑140 (MQ=255)
                                                                                actGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGtt                                                     >  1:1473965/1‑140 (MQ=255)
                                                                                    aCCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCACCGTTTAcc                                                 >  2:1114265/1‑140 (MQ=255)
                                                                                         aacaacGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGcc                                            >  2:208910/1‑140 (MQ=255)
                                                                                         aacaacGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGcc                                            >  1:330916/1‑140 (MQ=255)
                                                                                              cGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATg                                       <  2:1110712/140‑1 (MQ=255)
                                                                                              cGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATg                                       >  2:1714156/1‑140 (MQ=255)
                                                                                              cGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATg                                       >  2:983973/1‑140 (MQ=255)
                                                                                              cGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATg                                       <  2:1473965/140‑1 (MQ=255)
                                                                                               ggCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGc                                      <  1:902821/140‑1 (MQ=255)
                                                                                                gCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGcc                                     >  1:1747844/1‑140 (MQ=255)
                                                                                                gCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGcc                                     >  1:507468/1‑140 (MQ=255)
                                                                                                 cATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCg                                    <  1:1714156/140‑1 (MQ=255)
                                                                                                  aTCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCgg                                   <  1:208910/140‑1 (MQ=255)
                                                                                                  aTCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCgg                                   >  2:82341/1‑140 (MQ=255)
                                                                                                   tCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGt                                  >  2:236026/1‑140 (MQ=255)
                                                                                                   tCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGt                                  >  1:599837/1‑140 (MQ=255)
                                                                                                   tCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGt                                  >  1:43894/1‑140 (MQ=255)
                                                                                                      aaGAGTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTg                               >  2:1444988/1‑140 (MQ=255)
                                                                                                          gTTGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGgaga                           >  2:596076/1‑140 (MQ=255)
                                                                                                           ttGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGAt                          >  1:401364/1‑140 (MQ=255)
                                                                                                            tGCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGAtg                         <  1:1114265/140‑1 (MQ=255)
                                                                                                             gCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATg                                       <  2:1439502/125‑1 (MQ=255)
                                                                                                             gCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATg                                       >  1:1439502/1‑125 (MQ=255)
                                                                                                             gCAGGAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGAtgc                        >  1:1315107/1‑140 (MQ=255)
                                                                                                                ggAAGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGAtgctgc                     >  2:756295/1‑140 (MQ=255)
                                                                                                                   aGGTGTAGAAGAAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTg                  >  2:1718575/1‑140 (MQ=255)
                                                                                                                        gagaggaAAACATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGCATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTGAAGcc             >  2:480071/2‑140 (MQ=255)
                                                                                                                                aaCATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGTGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTGAAGCCGTGAAAGc     >  1:249076/1‑140 (MQ=255)
                                                                                                                                aaCATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTGAAGCCGt           <  2:1686451/134‑1 (MQ=255)
                                                                                                                                aaCATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTGAAGCCGt           <  2:347927/134‑1 (MQ=255)
                                                                                                                                aaCATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTGAAGCCGt           >  1:347927/1‑134 (MQ=255)
                                                                                                                                aaCATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTGAAGCCGt           >  1:1686451/1‑134 (MQ=255)
                                                                                                                                aaCATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTGAAGCCGTGAAAGc     >  2:1461295/1‑140 (MQ=255)
                                                                                                                                aaCATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTGAAGCCGTGAAAGc     >  1:788806/1‑140 (MQ=255)
                                                                                                                                aaCATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTGAAGCCGTGAAAGc     >  1:670353/1‑140 (MQ=255)
                                                                                                                                  cATCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTGAAGCCGTGAAAGCca   <  1:756295/140‑1 (MQ=255)
                                                                                                                                   aTCAGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTGAAGCCGTGAAAGCcac  <  2:197249/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                         
CGTATATCGGCGGGTCGCTCTCCACATTGCGCGACGCATTTTTAAAAGTTGGCCTGCGCGCGATGACCTGTTTTGAAACTACTGACCGTAACAACGGCATCAAAGAGTTGCAGGAAGGTGTAGAAGAAAACATCCGTTTCG‑CCCGTTTGATTGATGAGGCGAAGAAAGCGACAAGCGAGCCGTATCTGGTGGAAGCACATATCGGTGCTCACGCGCCGTTTACCGTGCCGGATGCCGGTCTGGAGATGCTGCGTGAAGCCGTGAAAGCCAC  >  NC_000913/3019549‑3019819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A