Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F73 I1 R1 37 152.5 5346736 99.2% 5303962 139.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,794,055 C→A G23G (GGC→GGA)  rfaD → ADP‑L‑glycero‑D‑mannoheptose 6‑epimerase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,794,0550CA100.0% 999.4 / NA 286G23G (GGC→GGA) rfaDADP‑L‑glycero‑D‑mannoheptose 6‑epimerase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (101/185);  total (101/185)

Only 100 of 292 total aligned reads displayed.

TGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGCATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCG  >  NC_000913/3793918‑3794188
                                                                                                                                         |                                                                                                                                     
tgtgATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAAt                                                                                                                                     <  2:2521353/140‑1 (MQ=255)
  tgATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCa                                                                                                                                   <  2:2278964/140‑1 (MQ=255)
   gATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCAc                                                                                                                                  <  2:2006822/140‑1 (MQ=255)
   gATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCAc                                                                                                                                  >  1:323368/1‑140 (MQ=255)
   gATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCAc                                                                                                                                  <  1:1350886/140‑1 (MQ=255)
    aTGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCAcc                                                                                                                                 >  1:2284158/1‑140 (MQ=255)
    aTGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCAcc                                                                                                                                 <  1:1512830/140‑1 (MQ=255)
    aTGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCAcc                                                                                                                                 <  1:145351/140‑1 (MQ=255)
      ggTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGa                                                                                                                               <  1:697106/140‑1 (MQ=255)
      ggTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGa                                                                                                                               <  1:400679/140‑1 (MQ=255)
        tATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCTACATCGTTAAAGGCCTGAATGATAAAGGAATCACCGgta                                                                                                                             >  2:700753/1‑140 (MQ=255)
            aTTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCAc                                                                                                                                  >  2:791740/1‑131 (MQ=255)
            aTTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCt                                                                                                                         >  1:770289/1‑140 (MQ=255)
             ttACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCtg                                                                                                                        >  1:1725928/1‑140 (MQ=255)
                     aTTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGa                                                                                                                <  1:1272168/140‑1 (MQ=255)
                     aTTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGa                                                                                                                <  1:2334607/140‑1 (MQ=255)
                     aTTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGa                                                                                                                <  2:1735079/140‑1 (MQ=255)
                      ttCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCCCCGATATTCTGGGGGTGGaa                                                                                                               >  2:894590/1‑139 (MQ=255)
                      ttCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGa                                                                                                                >  2:60554/1‑139 (MQ=255)
                      ttCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGAc                                                                                                               <  2:770289/140‑1 (MQ=255)
                        cGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACaa                                                                                                             >  1:1499511/1‑140 (MQ=255)
                                 gaTTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGa                                                                                                    <  1:1239460/140‑1 (MQ=255)
                                  aTTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGAc                                                                                                   <  1:1988059/140‑1 (MQ=255)
                                    tGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACgg                                                                                                 >  1:54247/1‑140 (MQ=255)
                                      tctcTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCa                                                                                               >  2:2419385/1‑140 (MQ=255)
                                        tctGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCAcc                                                                                             <  1:1769822/140‑1 (MQ=255)
                                        tctGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCAcc                                                                                             >  1:1407351/1‑140 (MQ=255)
                                         ctGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCa                                                                                            <  2:2516059/140‑1 (MQ=255)
                                          tGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCaa                                                                                           <  1:1098341/140‑1 (MQ=255)
                                          tGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCaa                                                                                           <  1:1152376/140‑1 (MQ=255)
                                            aCTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGt                                                                                         >  2:731201/1‑140 (MQ=255)
                                            aCTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGt                                                                                         >  1:1742096/1‑140 (MQ=255)
                                               ccATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTtg                                                                                      <  1:73565/140‑1 (MQ=255)
                                                cATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTtgt                                                                                     >  2:1071327/1‑140 (MQ=255)
                                                cATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTtgt                                                                                     >  1:2477685/1‑140 (MQ=255)
                                                cATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTtgt                                                                                     >  2:449219/1‑140 (MQ=255)
                                                 aTAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTtgtg                                                                                    <  1:2544640/140‑1 (MQ=255)
                                                    aTTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAAc                                                                                 <  2:1303027/140‑1 (MQ=255)
                                                        gAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCtgg                                                                             >  2:1931544/1‑140 (MQ=255)
                                                        gAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCtgg                                                                             <  1:855223/140‑1 (MQ=255)
                                                          aGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCtggtg                                                                           <  2:2615820/140‑1 (MQ=255)
                                                          aGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCtggtg                                                                           >  1:1033406/1‑140 (MQ=255)
                                                          aGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCtggtg                                                                           <  1:1639464/140‑1 (MQ=255)
                                                             ttACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGAt                                                                        <  2:2434724/140‑1 (MQ=255)
                                                               aCAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTtg                                                                                      <  1:2118745/124‑1 (MQ=255)
                                                                  gTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGaa                                                                   <  2:158203/140‑1 (MQ=255)
                                                                      tGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATc                                                               >  1:1486336/1‑140 (MQ=255)
                                                                      tGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGGGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATc                                                               >  2:1444450/1‑140 (MQ=255)
                                                                      tGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGGGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATc                                                               >  2:1172733/1‑140 (MQ=255)
                                                                       gATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCg                                                              <  2:2109265/140‑1 (MQ=255)
                                                                       gATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCg                                                              <  1:2604682/140‑1 (MQ=255)
                                                                       gATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCg                                                              <  2:471377/140‑1 (MQ=255)
                                                                       gATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCg                                                              <  1:239436/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  2:2085518/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  2:2408592/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  2:2655884/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  2:1802361/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  2:378133/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  2:1656900/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  1:652899/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  2:858474/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  2:135896/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  1:1897839/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  2:1241055/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  2:1063961/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  2:662829/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  1:578129/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  1:2162269/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  1:2295635/140‑1 (MQ=255)
                                                                         tcatcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            <  1:2564796/140‑1 (MQ=255)
                                                                          catcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAg                                                           <  2:2564704/140‑1 (MQ=255)
                                                                           atcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAGAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGa                                                          <  2:145793/140‑1 (MQ=255)
                                                                           atcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGa                                                          >  2:2143679/1‑140 (MQ=255)
                                                                           atcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGa                                                          <  1:1933392/140‑1 (MQ=255)
                                                                           atcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGa                                                          >  1:2067851/1‑140 (MQ=255)
                                                                           atcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGa                                                          <  2:2217805/140‑1 (MQ=255)
                                                                           atcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGa                                                          >  2:544272/1‑140 (MQ=255)
                                                                           atcGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGa                                                          <  2:1693834/140‑1 (MQ=255)
                                                                           atcGTTACCGGCGGCGCGGGCTTTATCGACAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGa                                                          >  2:1769368/1‑140 (MQ=255)
                                                                             cGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCg                                                              <  1:44796/134‑1 (MQ=255)
                                                                             cGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCa                                                            >  2:2290942/1‑136 (MQ=255)
                                                                             cGTTACCGGCGGCGCGGGCTTTATCGGCAGCAAAATCGTTAAAGCCCTGAATAATAAAGGAAACACCGATATTCTGGTGGTGGACAAACTGAAAGACGGCAACAAGAATGTGAACCTGGTGGATATGAATATCGCAGACt                                                        >  2:706975/1‑140 (MQ=255)
                                                                               ttACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACtat                                                      <  2:2062058/140‑1 (MQ=255)
                                                                               ttACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACtat                                                      <  1:118519/140‑1 (MQ=255)
                                                                               ttACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACtat                                                      <  2:411840/140‑1 (MQ=255)
                                                                                    ggcggcGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGa                                                 <  1:623226/140‑1 (MQ=255)
                                                                                        gcgcGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAg                                             <  1:1064299/140‑1 (MQ=255)
                                                                                           cgGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGaa                                          <  1:466386/140‑1 (MQ=255)
                                                                                                 ttATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACtat                                                      <  2:1223134/122‑1 (MQ=255)
                                                                                                  tATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTcc                                   <  2:1971105/140‑1 (MQ=255)
                                                                                                  tATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTcc                                   <  1:894590/140‑1 (MQ=255)
                                                                                                     cGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGa                                <  1:1229618/140‑1 (MQ=255)
                                                                                                      ggCAGCAACATCGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGAt                               <  1:706543/140‑1 (MQ=255)
                                                                                                                 cGTTAAAGCCCTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTAtgg                    >  2:913868/1‑140 (MQ=255)
                                                                                                                         cccTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGaa            <  2:184097/140‑1 (MQ=255)
                                                                                                                         cccTGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGaa            <  1:291323/140‑1 (MQ=255)
                                                                                                                            tGAATGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAagag         >  1:2035481/1‑140 (MQ=255)
                                                                                                                              aaTGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGtt       >  2:1499919/1‑140 (MQ=255)
                                                                                                                              aaTGATAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGtt       >  1:1597787/1‑140 (MQ=255)
                                                                                                                                   tAAAGGAATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCg  <  1:2204835/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                     
TGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTTATCGGCAGCAACATCGTTAAAGCCCTGAATGATAAAGGCATCACCGATATTCTGGTGGTGGACAACCTGAAAGACGGCACCAAGTTTGTGAACCTGGTGGATCTGAATATCGCAGACTATATGGATAAGGAAGACTTCCTGATCCAGATTATGGCTGGCGAAGAGTTCGGCG  >  NC_000913/3793918‑3794188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A