Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F73 I1 R1	26	148.5	5206078	99.3%	5169635	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,814,804	G→T	G104V (GGC→GTC)	slmA →	nucleoid occlusion factor SlmA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,814,804	0	G	T	100.0%	442.3 / NA	122	G104V (GGC→GTC)	slmA	nucleoid occlusion factor SlmA
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (52/70); total (52/70)

Only 100 of 131 total aligned reads displayed.

TCGATAGCCTGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGAGGGTGAA  >  NC_000913/3814669‑3814940

tCGATAGCCTGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAAtcctgtcctg                                                                                                                                      >  1:1588047/1‑140 (MQ=255)

 cGATAGCCTGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGa                                                                                                                                     <  1:2372773/140‑1 (MQ=255)

 cGATAGCCTGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGa                                                                                                                                     >  2:859642/1‑140 (MQ=255)

   aTAGCCTGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGAcc                                                                                                                                   <  1:538854/140‑1 (MQ=255)

   aTAGCCTGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGAcc                                                                                                                                   <  2:20256/140‑1 (MQ=255)

     aGCCTGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCg                                                                                                                                 <  1:809035/140‑1 (MQ=255)

      gCCTGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGc                                                                                                                                >  2:1452188/1‑140 (MQ=255)

       ccTGATTGAGTTTATCGAAGATGGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCATGACCCGCa                                                                                                                               >  1:298328/1‑140 (MQ=255)

       ccTGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCa                                                                                                                               <  2:2484684/140‑1 (MQ=255)

       ccTGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCa                                                                                                                               <  1:403786/140‑1 (MQ=255)

       ccTGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCa                                                                                                                               >  1:2119691/1‑140 (MQ=255)

       ccTGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCa                                                                                                                               <  2:2058626/140‑1 (MQ=255)

         tGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATc                                                                                                                             >  1:578451/1‑140 (MQ=255)

          gATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGc                                                                                                                                >  1:2552618/1‑136 (MQ=255)

          gATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGc                                                                                                                                <  2:2552618/136‑1 (MQ=255)

           aTTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCt                                                                                                                           <  1:828590/140‑1 (MQ=255)

           aTTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCt                                                                                                                           >  1:753927/1‑140 (MQ=255)

                 tttATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTgg                                                                                                                     >  2:871558/1‑140 (MQ=255)

                 tttATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTgg                                                                                                                     >  1:1967701/1‑140 (MQ=255)

                 tttATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTgg                                                                                                                     >  1:871601/1‑140 (MQ=255)

                  ttATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGt                                                                                                                    <  1:399122/140‑1 (MQ=255)

                   tATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTc                                                                                                                   <  2:1730683/140‑1 (MQ=255)

                     tCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCGTCCTCACTGGTCAt                                                                                                                 >  2:356434/1‑140 (MQ=255)

                     tCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCAt                                                                                                                 >  2:1740683/1‑140 (MQ=255)

                      cGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATg                                                                                                                >  1:1776273/1‑140 (MQ=255)

                         aGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATgcgc                                                                                                             >  2:746129/1‑140 (MQ=255)

                          gATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTc                                                                                                                   <  1:1408104/133‑1 (MQ=255)

                          gATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTc                                                                                                                   >  2:1408104/1‑133 (MQ=255)

                          gATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCt                                                                                                            >  1:1182093/1‑140 (MQ=255)

                          gATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCt                                                                                                            <  2:1963182/140‑1 (MQ=255)

                          gATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCt                                                                                                            <  1:2498852/140‑1 (MQ=255)

                          gATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCt                                                                                                            <  2:578451/140‑1 (MQ=255)

                           aTAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTa                                                                                                           >  1:1788967/1‑140 (MQ=255)

                           aTAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTa                                                                                                           >  2:424410/1‑140 (MQ=255)

                           aTAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTa                                                                                                           >  2:1475196/1‑140 (MQ=255)

                            tAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTaa                                                                                                          <  1:1475196/140‑1 (MQ=255)

                               ccTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGt                                                                                                       <  1:1598640/140‑1 (MQ=255)

                               ccTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGt                                                                                                       >  2:665889/1‑140 (MQ=255)

                                         cGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGa                                                                                             <  2:137149/140‑1 (MQ=255)

                                             tCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGc                                                                                         >  1:1435795/1‑140 (MQ=255)

                                             tCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGc                                                                                         >  2:1886268/1‑140 (MQ=255)

                                                    ggttCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAg                                                                                  <  1:489898/138‑1 (MQ=255)

                                                    gATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAg                                                                                  >  2:1502191/1‑140 (MQ=255)

                                                    gATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAg                                                                                  >  1:2424637/1‑140 (MQ=255)

                                                        cTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGgcg                                                                              <  1:746577/140‑1 (MQ=255)

                                                        cTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGgcg                                                                              <  1:142275/140‑1 (MQ=255)

                                                          gAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCa                                                                            <  1:166458/140‑1 (MQ=255)

                                                           aaaGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAt                                                                           >  2:2319335/1‑140 (MQ=255)

                                                           aaaGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCGTCTCGGTTTTGGTTAGCGCAATCCTGTCCTGACCCACATCCTTACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAt                                                                           >  2:1210080/1‑140 (MQ=255)

                                                            aaGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATc                                                                          <  1:1375643/140‑1 (MQ=255)

                                                              gATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCGTCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCaa                                                                        <  1:356434/140‑1 (MQ=255)

                                                               aTGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAAc                                                                       >  1:41924/1‑140 (MQ=255)

                                                                 gagaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCa                                                                     >  1:778968/1‑140 (MQ=255)

                                                                  agaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAg                                                                    <  2:1435795/140‑1 (MQ=255)

                                                                  agaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAg                                                                    <  2:2473013/140‑1 (MQ=255)

                                                                  agaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAg                                                                    <  2:1816647/140‑1 (MQ=255)

                                                                  agaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAg                                                                    <  1:1494247/140‑1 (MQ=255)

                                                                  agaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAg                                                                    >  1:2236839/1‑140 (MQ=255)

                                                                   gaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGc                                                                   <  1:744308/140‑1 (MQ=255)

                                                                        acacCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTc                                                              <  1:2426054/140‑1 (MQ=255)

                                                                          cccacAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTACTGACCCGCATCCTCACTGGTCATGCGCTAATGTGTGAACGGGATCGCTTGCAGGGGGGCATAAACCAGCTGTTCgc                                                            <  2:535894/139‑2 (MQ=255)

                                                                          accacAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGa                                                            >  2:2074804/1‑140 (MQ=255)

                                                                          accacAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGa                                                            >  1:2204013/1‑140 (MQ=255)

                                                                              caGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAAcc                                                                      <  1:1186644/126‑1 (MQ=255)

                                                                              caGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAAcc                                                                      >  2:1186644/1‑126 (MQ=255)

                                                                                 cgcgcCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTAtt                                                     >  2:2104392/1‑140 (MQ=255)

                                                                                  gcgcCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTg                                                    <  2:391508/140‑1 (MQ=255)

                                                                                  gcgcCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTg                                                    <  1:913788/140‑1 (MQ=255)

                                                                                   cgcCTGCGTCTGATAGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGa                                                   >  2:1422445/1‑140 (MQ=255)

                                                                                      cTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAgc                                                >  2:85142/1‑140 (MQ=255)

                                                                                      cTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAgc                                                >  2:1884146/1‑140 (MQ=255)

                                                                                          gTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAg                                            <  1:768981/140‑1 (MQ=255)

                                                                                           tCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGc                                           <  1:1502191/140‑1 (MQ=255)

                                                                                            cTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCt                                          <  2:1705501/140‑1 (MQ=255)

                                                                                            cTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCt                                          <  1:2091316/140‑1 (MQ=255)

                                                                                              gATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTgc                                        <  2:1314882/140‑1 (MQ=255)

                                                                                                 tgtgTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGcc                                     <  1:1886268/140‑1 (MQ=255)

                                                                                                   tgtTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAg                                   >  1:204656/1‑140 (MQ=255)

                                                                                                       gctgctTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTAt                               <  1:2488888/140‑1 (MQ=255)

                                                                                                       gctgctTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTAt                               <  2:2528854/140‑1 (MQ=255)

                                                                                                        ctgctTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTAtt                              >  2:749893/1‑140 (MQ=255)

                                                                                                        ctgctTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTAtt                              >  1:324673/1‑140 (MQ=255)

                                                                                                         tgctTCTCGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTg                             >  2:2374823/1‑140 (MQ=255)

                                                                                                             tctcGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTg                         >  1:1589739/1‑140 (MQ=255)

                                                                                                             tctcGGTTTTGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTg                         >  1:1798263/1‑140 (MQ=255)

                                                                                                                     ttGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAgaga                 <  2:204656/140‑1 (MQ=255)

                                                                                                                     ttGGTGAGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAgaga                 <  1:859642/140‑1 (MQ=255)

                                                                                                                           aGCGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGt           <  1:2104392/140‑1 (MQ=255)

                                                                                                                             cGTAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGa         >  1:1935473/1‑140 (MQ=255)

                                                                                                                               tAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGAgg       <  1:2374823/140‑1 (MQ=255)

                                                                                                                                 aTCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGAGGGt     <  1:85142/140‑1 (MQ=255)

                                                                                                                                 aTCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGAGGGt     <  2:1182093/140‑1 (MQ=255)

                                                                                                                                 aTCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGAGGGt     <  1:692009/140‑1 (MQ=255)

                                                                                                                                 aTCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGAGGGt     <  1:1502506/140‑1 (MQ=255)

                                                                                                                                  tcctgtcctgACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGAGGGTg    <  1:926302/140‑1 (MQ=255)

                                                                                                                                  tcctgtcctgACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGAGGGTg    >  2:1131910/1‑140 (MQ=255)

                                                                                                                                  tcctgtcctgACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGAGGGTg    <  2:2236839/140‑1 (MQ=255)

                                                                                                                                  tcctgtcctgACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGAGGGTg    <  2:2019038/140‑1 (MQ=255)

                                                                                                                                   ccTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGAGGGTGa   <  2:753927/140‑1 (MQ=255)

                                                                                                                                    cTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGAGGGTGaa  <  2:1579630/140‑1 (MQ=255)

TCGATAGCCTGATTGAGTTTATCGAAGATAGCCTGATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATTGAAGCGCAGCTGCGCCAGGTATTGCGTGAAAAGAGAATGCGTGAGGGTGAA  >  NC_000913/3814669‑3814940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A