Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F73 I1 R1 37 152.5 5346736 99.2% 5303962 139.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,912,052 C→A A539A (GCG→GCT)  glmS ← L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,912,0520CA100.0% 574.1 / NA 160A539A (GCG→GCT) glmSL‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (103/57);  total (103/57)

Only 100 of 168 total aligned reads displayed.

CAGCAGCTGCAGCGGAACGGTGTAGAAGATCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGCGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGT  >  NC_000913/3911917‑3912188
                                                                                                                                       |                                                                                                                                        
 agcagcTGCAGCGGAACGGTGTAGAAGATCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCAcgagcgcg                                                                                                                                     >  2:1397912/1‑140 (MQ=255)
 agcagcTGCAGCGGAACGGTGTAGAAGATCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCAcgagcgcg                                                                                                                                     >  2:1186095/1‑140 (MQ=255)
 agcagcTGCAGCGGAACGGTGTAGAAGATCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCAcgagcgcg                                                                                                                                     <  1:1218094/140‑1 (MQ=255)
   cagcTGCAGCGGAACGGTGTAGAAGATCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGaa                                                                                                                                   >  1:484786/1‑140 (MQ=255)
    agcTGCAGCGGAACGGTGTAGAAGATCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAAc                                                                                                                                  >  2:909939/1‑140 (MQ=255)
    agcTGCAGCGGAACGGTGTAGAAGATCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAAc                                                                                                                                  >  1:944826/1‑140 (MQ=255)
         cAGCGGAACGGTGTAGAAGATCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTCCTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAActtctt                                                                                                                             <  1:1958515/140‑1 (MQ=255)
         cAGCGGAACGGTGTAGAAGATCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAActtctt                                                                                                                             >  2:604773/1‑140 (MQ=255)
         cAGCGGAACGGTGTAGAAGATCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAActtctt                                                                                                                             >  2:2551629/1‑140 (MQ=255)
                      tAGAAGATCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGAttt                                                                                                                >  1:2523194/1‑140 (MQ=255)
                         aagaTCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAg                                                                                                             >  1:2281316/1‑140 (MQ=255)
                          agaTCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGt                                                                                                            <  1:909939/140‑1 (MQ=255)
                             tCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGtttt                                                                                                         >  1:1045573/1‑140 (MQ=255)
                             tCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGtttt                                                                                                         >  1:2138107/1‑140 (MQ=255)
                              cGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGttttt                                                                                                        >  1:1798666/1‑140 (MQ=255)
                              cGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGttttt                                                                                                        >  1:1829157/1‑140 (MQ=255)
                              cGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGttttt                                                                                                        >  1:486130/1‑140 (MQ=255)
                              cGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGttttt                                                                                                        >  1:895442/1‑140 (MQ=255)
                              cGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGttttt                                                                                                        >  1:203691/1‑140 (MQ=255)
                              cGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGttttt                                                                                                        >  1:324972/1‑140 (MQ=255)
                              cGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGttttt                                                                                                        >  2:1303203/1‑140 (MQ=255)
                              cGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGttttt                                                                                                        >  2:2064582/1‑140 (MQ=255)
                              cGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGttttt                                                                                                        >  1:2629166/1‑140 (MQ=255)
                              cGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGttttt                                                                                                        >  1:257859/1‑140 (MQ=255)
                              cGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGttttt                                                                                                        >  1:2435986/1‑140 (MQ=255)
                                gTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGAtt                                                                                                                 <  2:2373795/129‑1 (MQ=255)
                                gTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGAtt                                                                                                                 >  1:2373795/1‑129 (MQ=255)
                                gTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTcc                                                                                                      >  1:844322/1‑140 (MQ=255)
                                gTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTcc                                                                                                      >  2:2252728/1‑140 (MQ=255)
                                gTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTcc                                                                                                      >  1:1468135/1‑140 (MQ=255)
                                    aaTCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCa                                                                                                  <  1:1646823/140‑1 (MQ=255)
                                         ccTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCg                                                                                             >  1:2473886/1‑140 (MQ=255)
                                               ccACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTc                                                                                       <  2:646294/140‑1 (MQ=255)
                                                cacaTGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCg                                                                                      >  1:21878/1‑140 (MQ=255)
                                                 acaTGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCgg                                                                                     <  1:2524550/140‑1 (MQ=255)
                                                 acaTGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCgg                                                                                     <  2:1129029/140‑1 (MQ=255)
                                                  caTGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCgttgtt                                                                                        >  1:139864/1‑136 (MQ=255)
                                                  caTGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCgttgtt                                                                                        <  2:139864/136‑1 (MQ=255)
                                                   aTGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTg                                                                                   <  2:2076016/140‑1 (MQ=255)
                                                    tGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGc                                                                                  >  1:2196188/1‑140 (MQ=255)
                                                    tGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGc                                                                                  >  2:867528/1‑140 (MQ=255)
                                                     gCGGCATCGCGATGATGTGCATGTTATCGCTCCTTACAAAACCCGCACCCTGTTCGGCGAAGACATAAAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGca                                                                                 <  2:550558/140‑1 (MQ=255)
                                                      gggtatttcGATGATGGGCATGTTATCGCTACTTACAAACCCCGAATCCTTATGGGCGAAGACATAGAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGcaa                                                                                <  2:1320290/133‑1 (MQ=255)
                                                       ggCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGcaac                                                                               >  1:737332/1‑140 (MQ=255)
                                                       ggCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGcaac                                                                               >  1:2654341/1‑140 (MQ=255)
                                                       ggCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGcaac                                                                               >  1:1017336/1‑140 (MQ=255)
                                                       ggCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGcaac                                                                               >  1:114250/1‑140 (MQ=255)
                                                       ggCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGcaac                                                                               >  2:2524521/1‑140 (MQ=255)
                                                       ggCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGATGTTCGGTGcaac                                                                               >  2:245151/1‑140 (MQ=255)
                                                        gCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGcaaca                                                                              >  1:293759/1‑140 (MQ=255)
                                                                    tgtgCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGc                                                                  >  2:2030551/1‑140 (MQ=255)
                                                                     gtgCATGTTATCGCTACTTACAAAACCCGCATCCTGATTGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCa                                                                 >  1:110584/1‑140 (MQ=255)
                                                                     gtgCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGcaa                                                                                <  1:137317/125‑1 (MQ=255)
                                                                     gtgCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGcaa                                                                                >  2:137317/1‑125 (MQ=255)
                                                                      tgCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCat                                                                >  2:851837/1‑140 (MQ=255)
                                                                       gCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCata                                                               >  1:2410322/1‑140 (MQ=255)
                                                                        cATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCatat                                                              >  1:2289621/1‑140 (MQ=255)
                                                                        cATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCatat                                                              <  2:2281316/140‑1 (MQ=255)
                                                                           gTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCgg                                                           >  2:1525211/1‑140 (MQ=255)
                                                                             tATCCCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCa                                                         >  2:3362/1‑140 (MQ=255)
                                                                              aTCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCAt                                                        <  1:960195/140‑1 (MQ=255)
                                                                               tCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATc                                                       >  2:1463083/1‑140 (MQ=255)
                                                                               tCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATc                                                       >  1:1875419/1‑140 (MQ=255)
                                                                                     cTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAGTTAg                                                 >  1:1083900/1‑140 (MQ=255)
                                                                                     cTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAg                                                 >  2:1227887/1‑140 (MQ=255)
                                                                                     cTTACAAAACACGCATCCTGATCGGCGAAGACATACAACTAACCGCCACGAGCGCGAACTTCTTCAATGTTGGCTTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTac                                                 >  2:439899/1‑139 (MQ=255)
                                                                                       tACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAgcg                                               >  1:1610173/1‑140 (MQ=255)
                                                                                               ccGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGa                                       >  2:2501605/1‑140 (MQ=255)
                                                                                               ccGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGa                                       <  1:615319/140‑1 (MQ=255)
                                                                                               ccGCATCATGATCGGCAAAGACATCCAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGACATCAATTAGCGCCAGCGGa                                       <  1:750809/140‑1 (MQ=255)
                                                                                                 gCATCCTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAGTTAGCGCCAGCGGAcc                                     <  2:1083900/140‑1 (MQ=255)
                                                                                                     ccTGATCGGCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCgtgt                                 <  2:21878/140‑1 (MQ=255)
                                                                                                             gCGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTc                         >  2:507970/1‑140 (MQ=255)
                                                                                                              cGAAGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCg                        >  2:2484962/1‑140 (MQ=255)
                                                                                                                aaGACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGcc                      >  1:2325052/1‑140 (MQ=255)
                                                                                                                  gACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCcag                    <  1:311464/140‑1 (MQ=255)
                                                                                                                  gACATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCcag                    <  2:328545/140‑1 (MQ=255)
                                                                                                                    cATACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCcagca                  <  2:2473886/140‑1 (MQ=255)
                                                                                                                     aTACAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCcagcag                 >  1:1203665/1‑140 (MQ=255)
                                                                                                                        cAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGt              <  2:2289621/140‑1 (MQ=255)
                                                                                                                        cAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGt              <  2:1829157/140‑1 (MQ=255)
                                                                                                                        cAACTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCATTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGt              <  2:2435986/140‑1 (MQ=255)
                                                                                                                           cTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAgg           >  1:384967/1‑140 (MQ=255)
                                                                                                                           cTGACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTCTTTCAGTTCGCCAGCAGCGTAgg           >  1:1758000/1‑140 (MQ=255)
                                                                                                                             gACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCt         >  2:738677/1‑140 (MQ=255)
                                                                                                                             gACCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCt         >  1:1277793/1‑140 (MQ=255)
                                                                                                                              aCCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCtt        >  2:1547665/1‑140 (MQ=255)
                                                                                                                              aCCGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCtt        >  2:115887/1‑140 (MQ=255)
                                                                                                                                cGCCACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCa      <  2:302929/140‑1 (MQ=255)
                                                                                                                                  ccACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGc    <  2:2589854/140‑1 (MQ=255)
                                                                                                                                  ccACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGc    <  2:844322/140‑1 (MQ=255)
                                                                                                                                  ccACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGc    <  1:1102434/140‑1 (MQ=255)
                                                                                                                                  ccACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGc    <  2:1468135/140‑1 (MQ=255)
                                                                                                                                  ccACGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGc    <  2:2177122/140‑1 (MQ=255)
                                                                                                                                    aCGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGt  <  1:2252728/140‑1 (MQ=255)
                                                                                                                                    aCGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGt  <  2:2138107/140‑1 (MQ=255)
                                                                                                                                    aCGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGt  <  2:1087526/140‑1 (MQ=255)
                                                                                                                                    aCGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGt  <  2:669714/140‑1 (MQ=255)
                                                                                                                                    aCGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGt  <  2:2410322/140‑1 (MQ=255)
                                                                                                                                    aCGAGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGt  <  2:1798666/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
CAGCAGCTGCAGCGGAACGGTGTAGAAGATCGGTGCAATCACCTCTTCCACATGCGGCATCTCGATGATGTGCATGTTATCGCTACTTACAAAACCCGCATCCTGATCGGCGAAGACATACAACTGACCGCCACGCGCGCGAACTTCTTCAATGTTGGATTTCAGTTTTTCCAGCAATTCGTTGTTCGGTGCAACAACAATAACCGGCATATCGGCATCAATTAGCGCCAGCGGACCGTGTTTCAGTTCGCCAGCAGCGTAGGCTTCAGCGT  >  NC_000913/3911917‑3912188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A