Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F73 I1 R1
|
23 |
178.8 |
6243766 |
99.3% |
6200059 |
139.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,919,690 |
C→A |
P56P (CCG→CCT) |
atpA ← |
ATP synthase F1 complex subunit alpha |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,919,690 | 0 | C | A | 99.5%
| 765.7
/ ‑3.5
| 212 | P56P (CCG→CCT) | atpA | ATP synthase F1 complex subunit alpha |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (96/115); total (97/115) |
| Fisher's exact test for biased strand distribution p-value = 4.58e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.73e-01 |
Only 100 of 217 total aligned reads displayed.
CACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCCGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCA > NC_000913/3919554‑3919826
|
cACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTTGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTTCAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGc > 1:114311/1‑140 (MQ=255)
cACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGc > 2:1435559/1‑140 (MQ=255)
cACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGc > 2:1184326/1‑140 (MQ=255)
ggCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACcaggcagg < 2:1349962/140‑1 (MQ=255)
ccAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGga < 1:708197/140‑1 (MQ=255)
aaCCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGgaga < 2:1954952/140‑1 (MQ=255)
ccGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATc > 2:224194/1‑140 (MQ=255)
gAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCAtt < 1:2038197/140‑1 (MQ=255)
ttCCAGGATACGGCCAGTAC‑CTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCAcc < 2:454903/140‑1 (MQ=255)
tCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCAcc < 1:1725159/140‑1 (MQ=255)
tCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCAcc < 1:224194/140‑1 (MQ=255)
tCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCAcc < 1:1959701/140‑1 (MQ=255)
tCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCAcc < 1:2488012/140‑1 (MQ=255)
tCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCAcc < 1:1021182/140‑1 (MQ=255)
tCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCAcc < 2:2481603/140‑1 (MQ=255)
tCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCAcc < 2:320590/140‑1 (MQ=255)
aGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTg < 1:2748996/140‑1 (MQ=255)
gATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCa < 1:1056108/140‑1 (MQ=255)
aCGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCAcc < 2:2804982/132‑1 (MQ=255)
cGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACa > 1:774697/1‑140 (MQ=255)
ggCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACaa > 1:547945/1‑140 (MQ=255)
ggCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACaa > 1:1088442/1‑140 (MQ=255)
gCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAAt > 2:1645670/1‑140 (MQ=255)
ccAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATc > 2:253271/1‑140 (MQ=255)
tACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACa < 2:204461/133‑1 (MQ=255)
tACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGcc > 1:655443/1‑140 (MQ=255)
tACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGGTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGcc > 2:1998021/1‑140 (MQ=255)
acacTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCa > 1:58131/1‑140 (MQ=255)
cTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGc < 1:2718761/140‑1 (MQ=255)
ttAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGcc > 1:1833780/1‑140 (MQ=255)
ttAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGcc > 1:280647/1‑140 (MQ=255)
tAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCg > 1:406995/1‑140 (MQ=255)
aaCTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGt > 1:3120742/1‑140 (MQ=255)
aCTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTg > 1:1881650/1‑140 (MQ=255)
cTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGa > 2:1824174/1‑140 (MQ=255)
tttCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGaa > 1:518966/1‑140 (MQ=255)
ttCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAAt < 1:68004/140‑1 (MQ=255)
cATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGc > 1:2649085/1‑140 (MQ=255)
aTGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCg < 2:3074958/140‑1 (MQ=255)
aTGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCg > 1:140620/1‑140 (MQ=255)
ccTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGAt > 2:1117599/1‑140 (MQ=255)
tCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAac > 2:1023343/1‑140 (MQ=255)
gCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACAcc < 2:1771083/140‑1 (MQ=255)
gCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACAcc < 2:2649085/140‑1 (MQ=255)
aaGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGt < 2:216076/140‑1 (MQ=255)
aGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTc < 2:406995/140‑1 (MQ=255)
tCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACt < 1:2208778/140‑1 (MQ=255)
cAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACtt < 2:634924/140‑1 (MQ=255)
aGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTa < 1:1824174/140‑1 (MQ=255)
aGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTa < 2:1088442/140‑1 (MQ=255)
gCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTAc < 2:2354645/140‑1 (MQ=255)
cGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACa > 1:2365181/1‑140 (MQ=255)
ggACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAAc > 1:1174289/1‑140 (MQ=255)
ggACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAAc < 2:547945/140‑1 (MQ=255)
ggACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAAc > 1:2123257/1‑140 (MQ=255)
gACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACa > 2:715318/1‑140 (MQ=255)
cccATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAAt < 1:2854560/140‑1 (MQ=255)
cATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAg < 1:2030647/140‑1 (MQ=255)
cATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAg > 1:1621548/1‑140 (MQ=255)
aacCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCtt < 2:2365181/140‑1 (MQ=255)
acCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTc > 2:270299/1‑140 (MQ=255)
cGCACCTACAGAGTCGTGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCCCTTACAGAAACAATAGTCCCTTCGt > 2:711039/1‑140 (MQ=255)
ccTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTtgtg > 2:1837899/1‑140 (MQ=255)
cTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGa < 1:1320841/140‑1 (MQ=255)
cAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCt < 2:1578652/140‑1 (MQ=255)
cAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCt < 1:2789870/140‑1 (MQ=255)
gagTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtc < 2:140620/140‑1 (MQ=255)
gagTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtc < 1:2058047/140‑1 (MQ=255)
gagTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtc > 2:3120661/1‑140 (MQ=255)
tCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCtt < 1:45979/136‑1 (MQ=255)
tCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCtt < 2:648791/136‑1 (MQ=255)
tCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCt > 1:2136465/1‑135 (MQ=255)
tCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCt < 2:2136465/135‑1 (MQ=255)
tCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtcact > 2:2738860/1‑140 (MQ=255)
tCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtcact > 2:2195664/1‑140 (MQ=255)
tCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtcact < 1:2254190/140‑1 (MQ=255)
gcgcTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtcactca < 1:1435559/140‑1 (MQ=255)
gcgcTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtcactca < 2:2728498/140‑1 (MQ=255)
gcgcTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtcactca < 2:3090160/140‑1 (MQ=255)
gcgcTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtcactca < 2:472222/140‑1 (MQ=255)
gcgcTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtcactca < 2:740591/140‑1 (MQ=255)
gcgcTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtcactca < 1:720367/140‑1 (MQ=255)
gcgcTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtcactca < 1:2953543/140‑1 (MQ=255)
gcgcTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtc > 2:897124/1‑135 (MQ=255)
gcgcTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtc < 1:897124/135‑1 (MQ=255)
tgcTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtcactcac > 2:2097867/2‑140 (MQ=255)
cgcTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAATCAATAGTACCTTCGTTGTGAGCTtcactcac > 1:1682642/1‑140 (MQ=255)
cgcTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtcactca < 2:2584055/139‑1 (MQ=255)
cgcTCGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTtcactca > 1:2584055/1‑139 (MQ=255)
cGAGGTTCAGTTCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCacaaca < 1:177828/140‑1 (MQ=255)
cGAGGTTCAGTGCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCacaaca < 2:518966/140‑1 (MQ=255)
gCGATAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGc > 2:2559506/1‑140 (MQ=255)
aTAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAAt > 2:1477540/1‑140 (MQ=255)
tAGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATg > 1:1596062/1‑140 (MQ=255)
aGCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATgc < 1:210541/140‑1 (MQ=255)
gCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCacaaca < 2:845019/123‑1 (MQ=255)
gCGTAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCacaaca > 1:845019/1‑123 (MQ=255)
tAACGGTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCgctg > 2:1826165/1‑140 (MQ=255)
gTTACCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGa > 1:927503/1‑140 (MQ=255)
aCCAGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCa > 2:382355/1‑140 (MQ=255)
|
CACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGCGATAGCGTAACGGTTACCCGGCAGGGAGATCATTTCACCCTGCATACAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCA > NC_000913/3919554‑3919826
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
