Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F73 I1 R1 37 152.5 5346736 99.2% 5303962 139.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,014,242 C→A A397E (GCG→GAG)  metE → cobalamin‑independent homocysteine transmethylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,014,2420CA100.0% 476.8 / NA 134A397E (GCG→GAG) metEcobalamin‑independent homocysteine transmethylase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (70/64);  total (70/64)

Only 100 of 138 total aligned reads displayed.

AAATGCCATGAACTGGCACTGCTGCGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGCGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGAAATTCGTACC  >  NC_000913/4014106‑4014378
                                                                                                                                        |                                                                                                                                        
aaaTGCCATGAACTGGCACTGCTGCGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTggaggc                                                                                                                                       <  2:300378/140‑1 (MQ=255)
   tGCCATGAACTGGCACTGCTGCGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGAt                                                                                                                                    <  1:1132018/140‑1 (MQ=255)
   tGCCATGAACTGGCACTGCTGCGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGAt                                                                                                                                    >  1:160297/1‑140 (MQ=255)
   tGCCATGAACTGGCACTGCTGCGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGAt                                                                                                                                    >  1:1554571/1‑140 (MQ=255)
     ccATGAACTGGCACTGCTGCGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCCCTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCa                                                                                                                                  <  1:46416/140‑1 (MQ=255)
       aTGAACTGGCACTGCTGCGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCAcc                                                                                                                                >  2:834562/1‑140 (MQ=255)
       aTGAACTGGCACTGCTGCGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCAcc                                                                                                                                >  1:2118045/1‑140 (MQ=255)
         gAACTGGCACTGCTGCGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGc                                                                                                                              <  1:2471892/140‑1 (MQ=255)
         gAACTGGCACTGCTGCGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGc                                                                                                                              <  2:1841594/140‑1 (MQ=255)
                   tgctgcGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGAcagc                                                                                                                    <  2:2264390/140‑1 (MQ=255)
                    gctgcGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGAcagcc                                                                                                                   >  2:1043317/1‑140 (MQ=255)
                    gctgcGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGAcagcc                                                                                                                   >  1:850066/1‑140 (MQ=255)
                    gctgcGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTAGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGAcagcc                                                                                                                   >  1:1454304/1‑140 (MQ=255)
                     ctgcGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGAcagcca                                                                                                                  >  2:427962/1‑140 (MQ=255)
                         gcgATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGt                                                                                                              >  2:2370807/1‑140 (MQ=255)
                         gcgATGCGCTGAACAGTGGCGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCAATCTACCCGCGAACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAACga                                                                                                              >  2:2586044/1‑139 (MQ=255)
                          cgATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTg                                                                                                             >  2:581451/1‑140 (MQ=255)
                          cgATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCAGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTg                                                                                                             >  2:23703/1‑140 (MQ=255)
                            aTGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATCATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCg                                                                                                           <  2:1578901/140‑1 (MQ=255)
                            aTGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCg                                                                                                           <  2:1200411/140‑1 (MQ=255)
                            aTGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCg                                                                                                           <  2:1435029/140‑1 (MQ=255)
                            aTGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCg                                                                                                           <  2:1616050/140‑1 (MQ=255)
                             tGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGa                                                                                                          >  2:1284123/1‑140 (MQ=255)
                              gcgcTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGaa                                                                                                         <  1:427962/140‑1 (MQ=255)
                              gcgcTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGaa                                                                                                         <  2:1788521/140‑1 (MQ=255)
                              gcgcTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGaa                                                                                                         <  1:1578907/140‑1 (MQ=255)
                              gcgcTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGaa                                                                                                         <  2:2529210/140‑1 (MQ=255)
                              gcgcTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGaa                                                                                                         <  2:756579/140‑1 (MQ=255)
                              gcgcTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGaa                                                                                                         <  1:1043317/140‑1 (MQ=255)
                              gcgcGGAACAGAGGTGACACGGCAGCTCTGGCAGAGTGGAGCGTCGCGATTCAGGATCGTCGTCGCTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGaa                                                                                                         <  2:1104168/140‑1 (MQ=255)
                               cgcTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGTCAGCGTGCGAAt                                                                                                        >  2:819886/1‑140 (MQ=255)
                                   gAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCt                                                                                                    <  2:367785/140‑1 (MQ=255)
                                        gtggtgACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGaa                                                                                               <  1:834562/140‑1 (MQ=255)
                                         tggtgACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAg                                                                                              >  1:2368913/1‑140 (MQ=255)
                                         tggtgACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAg                                                                                              >  1:75936/1‑140 (MQ=255)
                                         tggtgACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAg                                                                                              >  2:1745810/1‑140 (MQ=255)
                                         tggtgACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAg                                                                                              >  1:643593/1‑140 (MQ=255)
                                           gtgACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAgtg                                                                                            >  1:2113088/1‑140 (MQ=255)
                                           gtgACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAgtg                                                                                            >  2:2077770/1‑140 (MQ=255)
                                            tgACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAgtgc                                                                                           <  2:286822/140‑1 (MQ=255)
                                             gACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAgtgcg                                                                                          <  1:1298378/140‑1 (MQ=255)
                                             gACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAgtgcg                                                                                          <  2:2113088/140‑1 (MQ=255)
                                             gACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAgtgcg                                                                                          <  2:2133629/140‑1 (MQ=255)
                                              acacGGCAGCTCTGGCAGGGTGGATCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGCAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAgtgcgt                                                                                         >  2:1849471/1‑140 (MQ=255)
                                              acacGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGaa                                                                                                         <  2:276905/124‑1 (MQ=255)
                                              acacGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGaa                                                                                                         >  1:276905/1‑124 (MQ=255)
                                              acacGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAgtgcgt                                                                                         >  1:790123/1‑140 (MQ=255)
                                                 cGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCt                                                                                      <  1:1066078/140‑1 (MQ=255)
                                                   gCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGaa                                                                                               >  2:1730478/1‑129 (MQ=255)
                                                   gCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGaa                                                                                               <  1:1730478/129‑1 (MQ=255)
                                                   gCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAgtgcgtg                                                                                        >  1:2593517/1‑136 (MQ=255)
                                                   gCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAgtgcgtg                                                                                        <  2:2593517/136‑1 (MQ=255)
                                                   gCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGa                                                                                    >  2:2376525/1‑140 (MQ=255)
                                                     aGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAg                                                                                  >  1:2174855/1‑140 (MQ=255)
                                                       ctctGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGcc                                                                                <  1:692940/140‑1 (MQ=255)
                                                               gagTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTgc                                                                        <  2:2570983/140‑1 (MQ=255)
                                                                agTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTgcg                                                                       <  1:909662/140‑1 (MQ=255)
                                                                  tGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGcgcg                                                                     >  1:1129663/1‑140 (MQ=255)
                                                                    gAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGtt                                                                   >  1:2842/1‑140 (MQ=255)
                                                                      gcgcCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGtttt                                                                 >  1:650017/1‑140 (MQ=255)
                                                                              aTTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGcc                                                         >  1:2495047/1‑140 (MQ=255)
                                                                                tCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAg                                                       <  2:2454850/140‑1 (MQ=255)
                                                                                 cAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGc                                                      >  1:594142/1‑140 (MQ=255)
                                                                                    gCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTg                                                   >  1:2633098/1‑140 (MQ=255)
                                                                                    gCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTg                                                   >  2:1594188/1‑140 (MQ=255)
                                                                                         tcgtcACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGTGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGa                                              >  1:2498856/1‑140 (MQ=255)
                                                                                         tcgtcACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGa                                              >  1:604555/1‑140 (MQ=255)
                                                                                         tcgtcACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGa                                              <  2:15157/140‑1 (MQ=255)
                                                                                         tcgtcACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGa                                              >  2:1352728/1‑140 (MQ=255)
                                                                                         tcgtcACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGa                                              >  1:921713/1‑140 (MQ=255)
                                                                                         tcgtcACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGa                                              >  2:230351/1‑140 (MQ=255)
                                                                                               ctctACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGAccacca                                        <  1:1412659/140‑1 (MQ=255)
                                                                                               ctctACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGAccacca                                        <  1:1906173/140‑1 (MQ=255)
                                                                                                  tACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGa                                     >  2:960436/1‑140 (MQ=255)
                                                                                                    cccGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGAtt                                   >  1:270763/1‑140 (MQ=255)
                                                                                                    cccGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGAtt                                   >  1:443809/1‑140 (MQ=255)
                                                                                                        cgTACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGtt                               >  1:217655/1‑140 (MQ=255)
                                                                                                          tACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCATCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGttcc                             >  2:437571/1‑140 (MQ=255)
                                                                                                          tACATAATCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGttcc                             >  1:958887/1‑140 (MQ=255)
                                                                                                                aTCCGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCg                       <  1:581451/140‑1 (MQ=255)
                                                                                                                  ccGGCGGTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCa                     >  2:573433/1‑140 (MQ=255)
                                                                                                                    ggcggTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCaaa                   <  2:921713/140‑1 (MQ=255)
                                                                                                                     gcggTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAAc                  >  1:2297239/1‑140 (MQ=255)
                                                                                                                     gcggTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAAc                  >  2:308975/1‑140 (MQ=255)
                                                                                                                      cggTAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAAcc                 >  2:1937587/1‑140 (MQ=255)
                                                                                                                         tAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACg              >  2:1495518/1‑140 (MQ=255)
                                                                                                                         tAGAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACg              <  2:2013219/140‑1 (MQ=255)
                                                                                                                           gAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGa            <  1:1284123/140‑1 (MQ=255)
                                                                                                                           gAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGa            <  2:1351413/140‑1 (MQ=255)
                                                                                                                           gAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGa            >  1:926737/1‑140 (MQ=255)
                                                                                                                           gAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGa            <  2:604555/140‑1 (MQ=255)
                                                                                                                           gAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGa            <  1:2128233/140‑1 (MQ=255)
                                                                                                                           gAAAAGCGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGa            <  1:2135841/140‑1 (MQ=255)
                                                                                                                                 cGTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGAAATTCg      <  2:802271/140‑1 (MQ=255)
                                                                                                                                  gTCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGAAATTCGt     >  1:1034358/1‑140 (MQ=255)
                                                                                                                                   tCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACTACGGAAATTCGTa    >  2:726622/1‑140 (MQ=255)
                                                                                                                                   tCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGAAATTCGTa    >  2:1905327/1‑140 (MQ=255)
                                                                                                                                   tCTGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGAAATTCGTa    >  1:1123469/1‑140 (MQ=255)
                                                                                                                                     tGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGAAATTCGTAcc  <  1:1476945/140‑1 (MQ=255)
                                                                                                                                     tGGAGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGAAATTCGTAcc  >  2:241578/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                        
AAATGCCATGAACTGGCACTGCTGCGCGATGCGCTGAACAGTGGTGACACGGCAGCTCTGGCAGAGTGGAGCGCCCCGATTCAGGCACGTCGTCACTCTACCCGCGTACATAATCCGGCGGTAGAAAAGCGTCTGGCGGCGATCACCGCCCAGGACAGCCAGCGTGCGAATGTCTATGAAGTGCGTGCTGAAGCCCAGCGTGCGCGTTTTAAACTGCCAGCGTGGCCGACCACCACGATTGGTTCCTTCCCGCAAACCACGGAAATTCGTACC  >  NC_000913/4014106‑4014378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A