Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F73 I1 R1 37 152.5 5346736 99.2% 5303962 139.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,071,820 G→T Q278K (CAA→AAA)  yihT ← 6‑deoxy‑6‑sulfofructose‑1‑phosphate aldolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,071,8200GT100.0% 479.4 / NA 133Q278K (CAA→AAA) yihT6‑deoxy‑6‑sulfofructose‑1‑phosphate aldolase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (72/61);  total (72/61)

Only 100 of 141 total aligned reads displayed.

TTACCAAAATCAAAGATGCGGTCGGTTTCCTGTTCCAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTGTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGAACAGT  >  NC_000913/4071683‑4071956
                                                                                                                                         |                                                                                                                                        
ttACCAAAATCAAAGATGCGGTCGGTTTCCTGTTCCAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTa                                                                                                                                        >  1:1350246/1‑140 (MQ=255)
  aCCAAAATCAAAGATGCGGTCGGTTTCCTGTTCCAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAAt                                                                                                                                      >  2:1854642/1‑140 (MQ=255)
                  cggtcggtTTCCTGTTCCAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGCTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGt                                                                                                                      >  1:540519/1‑140 (MQ=255)
                    gtcggtTTCCTGTTCCAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCa                                                                                                                    <  2:246266/140‑1 (MQ=255)
                    gtcggtTTCCTGTTCCAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCG‑TTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCAc                                                                                                                   <  2:70641/140‑1 (MQ=255)
                      cggtTTCCTGTTCCAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACg                                                                                                                  <  1:879240/140‑1 (MQ=255)
                      cggtTTCCTGTTCCAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACg                                                                                                                  <  2:498921/140‑1 (MQ=255)
                      cggtTTCCTGTTCCAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACg                                                                                                                  <  2:1922456/140‑1 (MQ=255)
                         tttCCTGTTCCAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACg                                                                                                                  <  1:2142687/137‑1 (MQ=255)
                         tttCCTGTTCCAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACg                                                                                                                  >  2:2142687/1‑137 (MQ=255)
                                 tggctggaaCGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCt                                                                                                       >  2:1329500/8‑140 (MQ=255)
                                  ccAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTc                                                                                                      >  2:1334805/1‑140 (MQ=255)
                                  ccAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTc                                                                                                      >  1:2496079/1‑140 (MQ=255)
                                   cAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCg                                                                                                     <  1:1687490/140‑1 (MQ=255)
                                   cAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCg                                                                                                     <  1:1738953/140‑1 (MQ=255)
                                   cAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCg                                                                                                     <  1:2164204/140‑1 (MQ=255)
                                     gCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAATTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGtt                                                                                                   <  2:2591513/140‑1 (MQ=255)
                                     gCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGtt                                                                                                   >  1:249544/1‑140 (MQ=255)
                                     gCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGtt                                                                                                   <  2:1518602/140‑1 (MQ=255)
                                     gCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGtt                                                                                                   <  1:214258/140‑1 (MQ=255)
                                                tgGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAAc                                                                                        >  2:1315758/1‑140 (MQ=255)
                                                   cTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACcga                                                                                     <  1:2211589/140‑1 (MQ=255)
                                                    ttAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACcgac                                                                                    <  2:2025131/140‑1 (MQ=255)
                                                    ttAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACcgac                                                                                    <  2:2441769/140‑1 (MQ=255)
                                                     tAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACcgacg                                                                                   >  1:1158903/1‑140 (MQ=255)
                                                        ggTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGAcc                                                                                <  2:1192370/140‑1 (MQ=255)
                                                        ggTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGAcc                                                                                <  2:679854/140‑1 (MQ=255)
                                                        ggTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGAcc                                                                                <  2:1350246/140‑1 (MQ=255)
                                                        ggTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGAcc                                                                                <  1:2427295/140‑1 (MQ=255)
                                                          tgtTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGa                                                                              <  2:1919578/140‑1 (MQ=255)
                                                            ttAATCCATTTCTTTCCTTTTATCCTCATCTTAGCTGCGTTTAGCCTTCATTTCGTCGATGATATCGCCACGTTGATTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCCCGTTGTCTGGTATACCGACGAACGATg                                                                            >  2:540026/1‑140 (MQ=255)
                                                            ttAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCGTCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATg                                                                            >  2:1797666/1‑140 (MQ=255)
                                                            ttAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATg                                                                            >  1:638141/1‑140 (MQ=255)
                                                            ttAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATg                                                                            >  2:2469234/1‑140 (MQ=255)
                                                            ttAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATg                                                                            >  2:2600198/1‑140 (MQ=255)
                                                            ttAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATg                                                                            >  2:1651851/1‑140 (MQ=255)
                                                             tAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTGAACCGACGACCGATGc                                                                           <  2:2030634/140‑1 (MQ=255)
                                                             tAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGc                                                                           >  2:2474025/1‑140 (MQ=255)
                                                               aaCCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGAcc                                                                                <  1:2408558/133‑1 (MQ=255)
                                                                aCCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCa                                                                        <  2:2316841/140‑1 (MQ=255)
                                                                aCCATTTCATTCCTCTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCa                                                                        <  1:821988/140‑1 (MQ=255)
                                                                    tttCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACt                                                                    >  2:1185825/1‑140 (MQ=255)
                                                                    tttCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACt                                                                    >  2:1074097/1‑140 (MQ=255)
                                                                    tttCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACt                                                                    >  2:1050817/1‑140 (MQ=255)
                                                                    tttCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACt                                                                    >  1:735847/1‑140 (MQ=255)
                                                                     ttCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGAcc                                                                                <  1:240353/127‑1 (MQ=255)
                                                                     ttCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGAcc                                                                                >  2:240353/1‑127 (MQ=255)
                                                                        aTTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCAc                                                                <  1:1050817/140‑1 (MQ=255)
                                                                        aTTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCAc                                                                <  1:1854642/140‑1 (MQ=255)
                                                                        aTTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCAc                                                                >  1:654710/1‑140 (MQ=255)
                                                                         ttCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACg                                                               <  1:1329500/140‑1 (MQ=255)
                                                                          tCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACgg                                                              >  1:2633604/1‑140 (MQ=255)
                                                                          tCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACgg                                                              <  1:802953/140‑1 (MQ=255)
                                                                           ccTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTTGTAAACCGACGACCGATGCCCAGACTGCACGGc                                                             <  1:306872/140‑1 (MQ=255)
                                                                           ccTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGc                                                             <  1:391731/140‑1 (MQ=255)
                                                                           ccTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGc                                                             <  2:1483055/140‑1 (MQ=255)
                                                                           ccTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGc                                                             <  2:1844273/140‑1 (MQ=255)
                                                                           ccTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGc                                                             <  1:1923303/140‑1 (MQ=255)
                                                                            cTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCa                                                                        >  1:2633860/1‑128 (MQ=255)
                                                                            cTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGcc                                                            >  1:1299316/1‑140 (MQ=255)
                                                                            cTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGcc                                                            >  1:2304858/1‑140 (MQ=255)
                                                                             ttttATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCt                                                           <  1:1240764/140‑1 (MQ=255)
                                                                              tttATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTg                                                          >  1:2603802/1‑140 (MQ=255)
                                                                              tttATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGCAACCCGACGACCGATGCCCAGACAGCACGGCCTg                                                          >  2:2653851/1‑140 (MQ=255)
                                                                              tttATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAACTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTg                                                          >  1:1072384/1‑140 (MQ=255)
                                                                                  tCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAg                                                      >  2:1630531/1‑140 (MQ=255)
                                                                                  tCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAg                                                      >  2:357610/1‑140 (MQ=255)
                                                                                   ccTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAgg                                                     >  2:1594/1‑140 (MQ=255)
                                                                                     tCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGaa                                                   <  1:1830831/140‑1 (MQ=255)
                                                                                      cATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTTTGGTAAACCGACGACCGATGCCCAGACTGCACgg                                                              >  1:1445872/1‑128 (MQ=255)
                                                                                      cATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAAt                                                  >  1:1336295/1‑140 (MQ=255)
                                                                                      cATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAAt                                                  >  2:1162955/1‑140 (MQ=255)
                                                                                      cATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAAt                                                  >  2:146654/1‑140 (MQ=255)
                                                                                       aTCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATc                                                 >  2:607652/1‑140 (MQ=255)
                                                                                            aGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGAt                                            <  1:1573675/140‑1 (MQ=255)
                                                                                            aGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGAt                                            >  2:2222208/1‑140 (MQ=255)
                                                                                            aGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGAt                                            >  1:1045704/1‑140 (MQ=255)
                                                                                              cggcgTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATgc                                          >  1:190680/1‑140 (MQ=255)
                                                                                              cggcgTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATgc                                          <  2:1856816/140‑1 (MQ=255)
                                                                                              cggcgTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATgc                                          >  1:462971/1‑140 (MQ=255)
                                                                                                 cgTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGcgcc                                       >  2:875601/1‑140 (MQ=255)
                                                                                                   tttAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGcgcccg                                     >  2:1901826/1‑140 (MQ=255)
                                                                                                    ttAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGcgcccgc                                    <  1:1630531/140‑1 (MQ=255)
                                                                                                           tcatTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCAtt                             >  2:928859/1‑140 (MQ=255)
                                                                                                             atTTCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGc                           >  2:134302/1‑140 (MQ=255)
                                                                                                               ttCGTCGACGATATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCa                         <  1:1487463/140‑1 (MQ=255)
                                                                                                                     tacgaTTCCGCCAAGTTGTTTTAATGTAGGGCGGCTACCGCCTGCCAGCAACCGCTCTTTTTCTGGTAAACCGACGACCGATGCCCGGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTa                   <  2:293610/139‑1 (MQ=255)
                                                                                                                      acgaTATCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTAc                  >  1:1653039/1‑140 (MQ=255)
                                                                                                                         atatCGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGc               >  2:206535/1‑140 (MQ=255)
                                                                                                                             cGCCAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCAcgc           <  2:280453/140‑1 (MQ=255)
                                                                                                                               ccAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCgg         >  1:890569/1‑140 (MQ=255)
                                                                                                                               ccAAGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCgg         <  1:481495/140‑1 (MQ=255)
                                                                                                                                 aaGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCa              >  2:1607236/1‑133 (MQ=255)
                                                                                                                                 aaGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGa       <  1:1845204/140‑1 (MQ=255)
                                                                                                                                  aGTTGTTTTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGaa      <  2:2496079/140‑1 (MQ=255)
                                                                                                                                  aGTTGTTTTAATTTCGGTGCGCAAACGACCCGCAGCATCAGCTCTTGTTCTGGAAAACCGACGACCGCTGCCCCGACTGCACGACCGGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGaa      <  2:1158903/140‑1 (MQ=255)
                                                                                                                                    ttgtttTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGAACa    >  2:1775686/1‑140 (MQ=255)
                                                                                                                                    ttgtttTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGAACa    >  2:315760/1‑140 (MQ=255)
                                                                                                                                    ttgtttTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGAACa    >  2:1157145/1‑140 (MQ=255)
                                                                                                                                      gttttAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGAACAGt  <  1:1162955/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
TTACCAAAATCAAAGATGCGGTCGGTTTCCTGTTCCAGCCAACGGTTGTGGCTTAGGGTGTTAAACCATTTCATTCCTTTTATCCTCATCTTAGCGGCGTTTAGCCATCATTTCGTCGACGATATCGCCAAGTTGTTGTAATTTCGGTGCGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGAACAGT  >  NC_000913/4071683‑4071956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A