Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F73 I1 R1
|
30 |
54.0 |
1878228 |
99.2% |
1863202 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,074,497 |
G→T |
A253A (GCG→GCT) |
yihV → |
6‑deoxy‑6‑sulfofructose kinase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,074,497 | 0 | G | T | 100.0%
| 207.0
/ NA
| 58 | A253A (GCG→GCT) | yihV | 6‑deoxy‑6‑sulfofructose kinase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (29/29); total (29/29) |
GTCTATGTGACCCAGGGTAGCGCAGGCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCGCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACTGTGATCAAACCCGATCTTTTTTGTCACTTT > NC_000913/4074363‑4074627
|
gTCTATGTGACCCAGGGTAGCGCAGGCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGc < 1:560009/140‑1 (MQ=255)
cTATGTGACCCAGGGTAGCGCAGGCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGcaa < 1:207629/140‑1 (MQ=255)
tgtgACCCAGGGTAGCGCAGGCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGcaacaa > 1:276379/1‑140 (MQ=255)
tgtgACCCAGGGTAGCGCAGGCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGcaacaa > 1:683547/1‑140 (MQ=255)
gtgACCCAGGGTAGCGCAGGCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAg > 1:635910/1‑140 (MQ=255)
aCCCAGGGTAGCGCAGGCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTgg < 2:127479/140‑1 (MQ=255)
cccAGGGTAGCGCAGGCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTggg > 2:534197/1‑140 (MQ=255)
aGGGTAGCGCAGGCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGAt > 2:914866/1‑140 (MQ=255)
cgcAGGCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCgg < 1:678184/140‑1 (MQ=255)
gCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCTCAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGagtca > 1:778820/1‑140 (MQ=255)
gCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGagtca > 1:130128/1‑140 (MQ=255)
gCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGagtca > 1:884253/1‑140 (MQ=255)
gCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGagtca > 1:631947/1‑140 (MQ=255)
gCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGagtca > 1:291859/1‑140 (MQ=255)
tGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGATTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGagtcagt > 1:914298/1‑140 (MQ=255)
cGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTcc > 2:572999/1‑140 (MQ=255)
cGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTcc > 2:738637/1‑140 (MQ=255)
tggAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGcc > 1:37513/1‑140 (MQ=255)
gAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAg < 1:534197/140‑1 (MQ=255)
gAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAg < 2:361313/140‑1 (MQ=255)
gAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAg < 2:291859/140‑1 (MQ=255)
gAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAg < 2:218738/140‑1 (MQ=255)
gAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAg < 2:608461/140‑1 (MQ=255)
gAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAg > 1:347891/1‑140 (MQ=255)
gAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAg < 1:531066/140‑1 (MQ=255)
gAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAg < 1:536405/140‑1 (MQ=255)
ggtggGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGgtgt > 1:413265/1‑140 (MQ=255)
tggGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCTCAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAg < 2:778820/140‑1 (MQ=255)
tggGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAg < 2:446655/140‑1 (MQ=255)
ttCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTaaaa < 2:361235/129‑1 (MQ=255)
ttCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTaaaa > 1:361235/1‑129 (MQ=255)
aTGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGAc < 2:489751/138‑1 (MQ=255)
aTGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGAc > 1:489751/1‑138 (MQ=255)
gtgGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGc < 1:150264/140‑1 (MQ=255)
aGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGc < 2:770207/135‑1 (MQ=255)
aGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGc > 1:770207/1‑135 (MQ=255)
tACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATcc < 1:914866/140‑1 (MQ=255)
tACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATcc < 1:738637/140‑1 (MQ=255)
aCCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATccc < 2:310885/140‑1 (MQ=255)
acaGGTGCGGGTTAGGTTTTTCGCGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGa < 2:635910/140‑1 (MQ=255)
acaGGTGCGGGAGATGTTTTTCACGGCGCTTTGGCGGAGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGa > 2:563796/1‑140 (MQ=255)
caGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGAc > 1:845132/1‑140 (MQ=255)
aGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACt < 1:807669/140‑1 (MQ=255)
aGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACt < 2:413265/140‑1 (MQ=255)
aGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACt > 1:366015/1‑140 (MQ=255)
ggTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACtg < 2:92204/140‑1 (MQ=255)
gTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACtgt > 1:817120/1‑140 (MQ=255)
gTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACtgt > 2:916417/1‑140 (MQ=255)
cGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCg > 2:122/1‑123 (MQ=255)
cGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCg < 1:122/123‑1 (MQ=255)
gATGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGCGGACGAGCCGGGATCCCTGACTGTGATCAAAc > 2:815072/1‑140 (MQ=255)
aTGTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACTGTGATCAAAcc < 2:914298/140‑1 (MQ=255)
gTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACTGTGATCAAACCCg < 2:347891/140‑1 (MQ=255)
gTTTTTCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACTGTGATCAAACCCg < 1:572999/140‑1 (MQ=255)
tCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACTGTGATCAAACCCGATCtt > 1:896811/1‑140 (MQ=255)
tCACGGCGCTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACTGTGATCAAACCCGATCtt > 1:497580/1‑140 (MQ=255)
cgcTTTGGCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGATAAAATGCACACGTCCCGGCGGACGAGCCGGGATCCCTGACTGTGATCAAACCAGATCTTTTTTGt > 2:173565/1‑140 (MQ=255)
gcTTTGGTGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACTGTGATCAAACCCGATCTTTTTTGTc < 2:788546/140‑1 (MQ=255)
ggCGGTGGCTCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACTGTGATCAAACCCGATCTTTTTTGTCACttt < 2:130128/140‑1 (MQ=255)
|
GTCTATGTGACCCAGGGTAGCGCAGGCTGCGACTGGCTGGAAAATGGTGGGCGTCAGCATCAACCGGCCTTCAAAGTTGATGTGGTAGATACCACAGGTGCGGGTGATGTTTTTCACGGCGCTTTGGCGGTGGCGCTGGCAACAAGTGGGGATTTAGCGGAGTCAGTCCGCTTCGCCAGCGGTGTAGCGGCGTTAAAATGCACACGTCCCGGTGGACGAGCCGGGATCCCTGACTGTGATCAAACCCGATCTTTTTTGTCACTTT > NC_000913/4074363‑4074627
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A