Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F73 I1 R1 37 152.5 5346736 99.2% 5303962 139.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,103,942 C→A G345V (GGC→GTC)  cpxA ← sensory histidine kinase CpxA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,103,9420CA100.0% 510.7 / NA 143G345V (GGC→GTC) cpxAsensory histidine kinase CpxA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (89/54);  total (89/54)

Only 100 of 145 total aligned reads displayed.

GGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGCCGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGTTTCGCTAACCAGCGCGT  >  NC_000913/4103810‑4104074
                                                                                                                                    |                                                                                                                                    
ggACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAg                                                                                                                               <  1:1027967/140‑1 (MQ=255)
ggACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAg                                                                                                                               >  1:261589/1‑140 (MQ=255)
      tcgtcgTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCa                                                                                                                         <  1:1761695/140‑1 (MQ=255)
      tcgtcgTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCa                                                                                                                         >  2:1537690/1‑140 (MQ=255)
      tcgtcgTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCa                                                                                                                         <  2:1126329/140‑1 (MQ=255)
       cgtcgtCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGATCAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCAc                                                                                                                        <  1:2627210/140‑1 (MQ=255)
           gtcCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGcc                                                                                                                    <  2:1618676/140‑1 (MQ=255)
              cACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAg                                                                                                                 >  2:187988/1‑140 (MQ=255)
                ccGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCCCTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCGGGc                                                                                                               <  2:2118770/140‑1 (MQ=255)
                ccGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGc                                                                                                               <  1:1585656/140‑1 (MQ=255)
                ccGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGc                                                                                                               >  2:44234/1‑140 (MQ=255)
                 cGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGAACAGCGGCCACGGCCGAGGCg                                                                                                              >  2:1342225/1‑140 (MQ=255)
                          gATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTaa                                                                                                     <  1:1515046/140‑1 (MQ=255)
                          gATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTaa                                                                                                     <  1:732419/140‑1 (MQ=255)
                          gATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTaa                                                                                                     <  1:306236/140‑1 (MQ=255)
                          gATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTaa                                                                                                     <  1:2407562/140‑1 (MQ=255)
                           aTACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAAc                                                                                                    >  2:1466098/1‑140 (MQ=255)
                             aCCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTg                                                                                                  >  1:964633/1‑140 (MQ=255)
                             aCCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTg                                                                                                  >  2:409413/1‑140 (MQ=255)
                                gTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGt                                                                                                        >  2:1983596/1‑131 (MQ=255)
                                gTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGt                                                                                                        <  1:1983596/131‑1 (MQ=255)
                                 tCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTaa                                                                                                     >  1:1049292/1‑133 (MQ=255)
                                 tCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTaa                                                                                                     <  2:1049292/133‑1 (MQ=255)
                                 tCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCaa                                                                                              >  1:540209/1‑140 (MQ=255)
                                 tCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCaa                                                                                              >  2:2622297/1‑140 (MQ=255)
                                 tCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCaa                                                                                              >  2:1717866/1‑140 (MQ=255)
                                 tCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAACGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCaa                                                                                              >  2:1963376/1‑140 (MQ=255)
                                  cTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAAc                                                                                             >  2:2672099/1‑140 (MQ=255)
                                  cTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAAc                                                                                             >  2:217309/1‑140 (MQ=255)
                                      aTCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACt                                                                                         >  2:368018/1‑140 (MQ=255)
                                      aTCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACt                                                                                         >  1:2478353/1‑140 (MQ=255)
                                           ccGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGccc                                                                                    >  2:1913224/1‑140 (MQ=255)
                                           ccGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGccc                                                                                    <  1:615631/140‑1 (MQ=255)
                                           ccGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGccc                                                                                    >  1:158273/1‑140 (MQ=255)
                                           ccGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGccc                                                                                    >  1:369774/1‑140 (MQ=255)
                                           ccGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGccc                                                                                    >  1:1419844/1‑140 (MQ=255)
                                            cGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCa                                                                                   >  1:847681/1‑140 (MQ=255)
                                             gCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCAt                                                                                  >  2:1349628/1‑140 (MQ=255)
                                              cAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCAtt                                                                                 >  1:1250314/1‑140 (MQ=255)
                                              cAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCAtt                                                                                 >  2:530428/1‑140 (MQ=255)
                                              cAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCAGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCAtt                                                                                 >  2:2301333/1‑140 (MQ=255)
                                                  gCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCt                                                                             <  1:516496/140‑1 (MQ=255)
                                                            aTCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGaa                                                                   <  2:1473699/140‑1 (MQ=255)
                                                              cTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAAcg                                                                 <  1:1917069/140‑1 (MQ=255)
                                                                 cGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAAcgccg                                                              >  1:2574913/1‑140 (MQ=255)
                                                                  gTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAAcgccgc                                                             >  1:1054214/1‑140 (MQ=255)
                                                                   tATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCcgcg                                                            <  1:2229803/140‑1 (MQ=255)
                                                                   tATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCcgcg                                                            <  2:2340281/140‑1 (MQ=255)
                                                                   tATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCAGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCcgcg                                                            <  1:2301333/140‑1 (MQ=255)
                                                                     tGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCACACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGtt                                                          <  1:2000643/140‑1 (MQ=255)
                                                                       ggAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTac                                                        >  1:519468/1‑139 (MQ=255)
                                                                       ggAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTAt                                                        >  2:651499/1‑140 (MQ=255)
                                                                        gAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATc                                                       <  1:535668/140‑1 (MQ=255)
                                                                        gAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATc                                                       >  1:1142818/1‑140 (MQ=255)
                                                                         aaTAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATcc                                                      >  1:173420/1‑140 (MQ=255)
                                                                           tAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAg                                                    >  1:1207214/1‑140 (MQ=255)
                                                                           tAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAg                                                    >  2:1857310/1‑140 (MQ=255)
                                                                             aCGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCa                                                  <  2:1760797/140‑1 (MQ=255)
                                                                             aCGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCa                                                  >  1:2139343/1‑140 (MQ=255)
                                                                             aCGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCa                                                  <  1:2643066/140‑1 (MQ=255)
                                                                              cGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCcgcg                                                            <  2:1277869/129‑1 (MQ=255)
                                                                              cGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCa                                                  <  2:499515/139‑1 (MQ=255)
                                                                              cGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCAc                                                 >  2:544630/1‑140 (MQ=255)
                                                                              cGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCAc                                                 >  1:408435/1‑140 (MQ=255)
                                                                              cGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCAc                                                 >  1:1694654/1‑140 (MQ=255)
                                                                                cAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACtt                                               <  1:551075/140‑1 (MQ=255)
                                                                                cAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACtt                                               <  2:2408173/140‑1 (MQ=255)
                                                                                cAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACtt                                               <  1:1913224/140‑1 (MQ=255)
                                                                                cAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACtt                                               <  1:2057543/140‑1 (MQ=255)
                                                                                cAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACtt                                               <  1:1349628/140‑1 (MQ=255)
                                                                                  gagCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCa                                                  >  2:81575/1‑135 (MQ=255)
                                                                                  gagCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCa                                                  <  1:81575/135‑1 (MQ=255)
                                                                                  gagCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCa                                             >  2:147810/1‑140 (MQ=255)
                                                                                  gagCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCa                                             <  1:451830/140‑1 (MQ=255)
                                                                                   agCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCAc                                            >  1:728080/1‑140 (MQ=255)
                                                                                   agCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCAc                                            >  1:27288/1‑140 (MQ=255)
                                                                                   agCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCAc                                            >  1:1124814/1‑140 (MQ=255)
                                                                                   agCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCAc                                            >  1:2190085/1‑140 (MQ=255)
                                                                                        tACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCcac                                       >  2:2250464/1‑140 (MQ=255)
                                                                                        tACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACACCGCGTTATCCAGCACTTCACTCcac                                       >  1:2169420/1‑140 (MQ=255)
                                                                                                aTGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGtt                               <  2:217165/140‑1 (MQ=255)
                                                                                                aTGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGtt                               >  1:268494/1‑140 (MQ=255)
                                                                                                  gTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTgg                             <  2:2251350/140‑1 (MQ=255)
                                                                                                         aGCGCACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGAt                      >  2:167184/1‑140 (MQ=255)
                                                                                                           cgcACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTGGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATgg                    <  2:2504954/140‑1 (MQ=255)
                                                                                                           cgcACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATgg                    >  2:1430529/1‑140 (MQ=255)
                                                                                                           cgcACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATgg                    <  1:2272145/140‑1 (MQ=255)
                                                                                                            gcACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGt                   >  2:2099815/1‑140 (MQ=255)
                                                                                                             cACTTTCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGtt                  >  1:2465714/1‑140 (MQ=255)
                                                                                                                 ttCCAGGGCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTCGATGGTTTCGc              <  2:847681/140‑1 (MQ=255)
                                                                                                                      gggCGTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGTTTCGCTAAcc         >  2:1247328/1‑140 (MQ=255)
                                                                                                                          gTTCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGTTTCGCTAACCAgcg     >  2:639403/1‑140 (MQ=255)
                                                                                                                            tCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGTTTCGCTAACCAGcgcg   >  2:352850/1‑140 (MQ=255)
                                                                                                                            tCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGTTTCGCTAACCAGcgcg   >  1:2402463/1‑140 (MQ=255)
                                                                                                                            tCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGTTTCGCTAACCAGcgcg   >  2:2492299/1‑140 (MQ=255)
                                                                                                                            tCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGTTTCGCTAACCAGcgcg   >  1:2488347/1‑140 (MQ=255)
                                                                                                                            tCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGTTTCGCTAACCAGcgcg   >  1:41501/1‑140 (MQ=255)
                                                                                                                            tCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGTTTCGCTAACCAGcgcg   >  2:549234/1‑140 (MQ=255)
                                                                                                                            tCGGATTGACGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGTTTCGCTAACCAGcgcg   >  1:1621583/1‑140 (MQ=255)
                                                                                                                            tCGGATTGACGTACAGCGGCCACGG‑CCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGTTTCGCTGACCAGCGCGt  >  2:415518/1‑140 (MQ=255)
                                                                                                                                    |                                                                                                                                    
GGACCATCGTCGTCCACCGTAATGGTGATACCGTCTTTATCTACCGCAAAGCCCACTTCAATCTTCGTATGGGAATAACGCAGAGCATTACGAACAATGTTTTCCAGCGCACTTTCCAGGGCGTTCGGATTGCCGTACAGCGGCCACGGCCCAGGCGGGAAGTTAACTGTCAACGACTTGCCCATTTGCTCGGCTTCGAACGCCGCGTTATCCAGCACTTCACTCCACAACTGGTTGGCTTTGATGGTTTCGCTAACCAGCGCGT  >  NC_000913/4103810‑4104074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A