Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A18 F73 I1 R1 22 83.4 2868466 99.3% 2848386 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,252,202 C→A intergenic (+192/‑102) yqjG → / → yhaH glutathionyl‑hydroquinone reductase YqjG/putative inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,252,2020CA100.0% 377.5 / NA 106intergenic (+192/‑102)yqjG/yhaHglutathionyl‑hydroquinone reductase YqjG/putative inner membrane protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (59/47);  total (59/47)

Only 100 of 108 total aligned reads displayed.

GTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGACTGGTATCTGAAAGTACTAAAAAATTATGT  >  NC_000913/3252065‑3252338
                                                                                                                                         |                                                                                                                                        
gTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAAc                                                                                                                                        >  2:1003937/1‑140 (MQ=255)
 tCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCAGAACCCGCGCAGACCAGATAAGCGTAGCGCATCGGGCGTATTTGGGCTTGGCATCAGTCTTAGCGCGCCTTCAGGGAACt                                                                                                                                       >  2:21544/1‑140 (MQ=255)
   ggATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACttt                                                                                                                                     >  1:250062/1‑140 (MQ=255)
   ggATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACttt                                                                                                                                     >  2:771332/1‑140 (MQ=255)
     aTGTGGCATGAACGCCTTATATGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTttat                                                                                                                                   >  1:1097499/1‑140 (MQ=255)
        tgGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTaa                                                                                                                                >  1:22095/1‑140 (MQ=255)
          gCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAA‑CCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTc                                                                                                                             >  1:1055332/1‑140 (MQ=255)
             tGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCt                                                                                                                           <  2:761734/140‑1 (MQ=255)
             tGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATCAATTCCt                                                                                                                           <  2:1354322/140‑1 (MQ=255)
               aaCGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTg                                                                                                                         >  1:1307524/1‑140 (MQ=255)
               aaCGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTg                                                                                                                         <  2:214327/140‑1 (MQ=255)
                aCGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGa                                                                                                                        <  1:1401144/140‑1 (MQ=255)
                 cGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGaa                                                                                                                       <  2:141223/140‑1 (MQ=255)
                   ccTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACg                                                                                                                     >  1:22482/1‑140 (MQ=255)
                   ccTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACg                                                                                                                     <  1:1362868/140‑1 (MQ=255)
                    cTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGa                                                                                                                    >  2:494387/1‑140 (MQ=255)
                    cTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGa                                                                                                                    >  2:640017/1‑140 (MQ=255)
                        tCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAatat                                                                                                                >  2:1035896/1‑140 (MQ=255)
                           gACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTa                                                                                                             >  1:364047/1‑140 (MQ=255)
                            aCATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTAc                                                                                                            >  1:380778/1‑140 (MQ=255)
                              aTACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTg                                                                                                          >  1:359454/1‑140 (MQ=255)
                              aTACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTg                                                                                                          >  1:1372899/1‑140 (MQ=255)
                              aTACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTg                                                                                                          >  2:13094/1‑140 (MQ=255)
                                aCAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGcc                                                                                                        >  1:164276/1‑140 (MQ=255)
                                   aaaCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCAGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCAtt                                                                                                     <  2:1031742/140‑1 (MQ=255)
                                        ttGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATttcatt                                                                                                >  2:134912/1‑140 (MQ=255)
                                        ttGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATttcatt                                                                                                <  2:250062/140‑1 (MQ=255)
                                        ttGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATttcatt                                                                                                <  2:365316/140‑1 (MQ=255)
                                        ttGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATttcatt                                                                                                <  1:478588/140‑1 (MQ=255)
                                         tGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATttcattc                                                                                               >  1:433894/1‑140 (MQ=255)
                                          gTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATttcattca                                                                                              >  2:473453/1‑140 (MQ=255)
                                          gTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATttcattca                                                                                              >  1:1282282/1‑140 (MQ=255)
                                           tACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCAc                                                                                             >  1:863434/1‑140 (MQ=255)
                                           tACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCAc                                                                                             >  2:748971/1‑140 (MQ=255)
                                           tACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCAc                                                                                             >  1:672444/1‑140 (MQ=255)
                                           tACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCAc                                                                                             >  1:464662/1‑140 (MQ=255)
                                             cATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGt                                                                                           <  1:134912/140‑1 (MQ=255)
                                             cATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGt                                                                                           <  2:1372899/140‑1 (MQ=255)
                                             cATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGt                                                                                           <  1:473453/140‑1 (MQ=255)
                                             cATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGt                                                                                           >  1:198735/1‑140 (MQ=255)
                                              aTTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTc                                                                                          <  2:359454/140‑1 (MQ=255)
                                              aTTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTc                                                                                          >  2:11496/1‑140 (MQ=255)
                                              aTTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTc                                                                                          >  2:1130139/1‑140 (MQ=255)
                                                tCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGc                                                                                                         >  1:1376886/1‑123 (MQ=255)
                                                tCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGc                                                                                                         <  2:1376886/123‑1 (MQ=255)
                                                tCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTa                                                                                        >  1:430481/1‑140 (MQ=255)
                                                tCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTa                                                                                        >  2:209945/1‑140 (MQ=255)
                                                 cAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGt                                                                                           >  2:814637/1‑136 (MQ=255)
                                                   aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTc                                                                                     <  1:238531/140‑1 (MQ=255)
                                                    tAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCt                                                                                    <  1:631772/140‑1 (MQ=255)
                                                     aGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCtt                                                                                   >  1:106490/1‑140 (MQ=255)
                                                          gCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAAttt                                                                              >  1:1205703/1‑140 (MQ=255)
                                                            aTAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTtgc                                                                            <  1:547561/140‑1 (MQ=255)
                                                            aTAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTtgc                                                                            >  1:1267483/1‑140 (MQ=255)
                                                             tAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTtgct                                                                           <  2:44413/140‑1 (MQ=255)
                                                                cccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTgctgct                                                                        <  1:1003937/140‑1 (MQ=255)
                                                                  cgcgCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCttt                                                                      <  1:748971/140‑1 (MQ=255)
                                                                   gcgcAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTa                                                                     >  1:10895/1‑140 (MQ=255)
                                                                    cgcAGACCAGATAAGCGTAGCGCATCTTGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTaa                                                                    <  2:1299123/140‑1 (MQ=255)
                                                                    cgcAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTaa                                                                    <  2:1189673/140‑1 (MQ=255)
                                                                     gcAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTaaa                                                                   >  1:866595/1‑140 (MQ=255)
                                                                     gcAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTaaa                                                                   >  1:4533/1‑140 (MQ=255)
                                                                           cAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAg                                                             <  1:771332/140‑1 (MQ=255)
                                                                              aTAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGa                                                          >  1:1326697/1‑140 (MQ=255)
                                                                              aTAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGa                                                          <  2:710528/140‑1 (MQ=255)
                                                                              aTAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGa                                                          <  2:1307047/140‑1 (MQ=255)
                                                                              aTAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGa                                                          <  1:640017/140‑1 (MQ=255)
                                                                                   cGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAg                                                     >  2:1141157/1‑140 (MQ=255)
                                                                                   cGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAg                                                     >  1:668255/1‑140 (MQ=255)
                                                                                   cGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTACTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAg                                                     >  2:1008601/1‑140 (MQ=255)
                                                                                     tAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCa                                                   >  1:987442/1‑140 (MQ=255)
                                                                                       gcgcATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCaaa                                                 >  1:59532/1‑140 (MQ=255)
                                                                                        cgcATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCaaaa                                                >  1:389284/1‑140 (MQ=255)
                                                                                        cgcATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCaaaa                                                >  2:1184219/1‑140 (MQ=255)
                                                                                        cgcATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCaaaa                                                >  1:49297/1‑140 (MQ=255)
                                                                                         gcATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAAt                                               <  2:1326697/140‑1 (MQ=255)
                                                                                              tGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAgg                                          <  2:672444/140‑1 (MQ=255)
                                                                                              tGGCGATGTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAgg                                          <  2:778386/140‑1 (MQ=255)
                                                                                               ggCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGc                                         <  2:1310710/140‑1 (MQ=255)
                                                                                                gCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCa                                        <  2:866595/140‑1 (MQ=255)
                                                                                                       tGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATgg                                 <  1:567317/140‑1 (MQ=255)
                                                                                                       tGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATgg                                 >  2:106097/1‑140 (MQ=255)
                                                                                                        gcgcTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGa                                <  2:1398762/140‑1 (MQ=255)
                                                                                                         cgcTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGAc                               <  2:257898/140‑1 (MQ=255)
                                                                                                         cgcTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGAc                               <  2:341110/140‑1 (MQ=255)
                                                                                                         cgcTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGAc                               <  1:13094/140‑1 (MQ=255)
                                                                                                         cgcTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGAc                               <  1:1269768/140‑1 (MQ=255)
                                                                                                         cgcTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGAc                               <  2:529466/140‑1 (MQ=255)
                                                                                                         cgcTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGAc                               <  2:794731/140‑1 (MQ=255)
                                                                                                          gcTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGACt                              <  2:464662/140‑1 (MQ=255)
                                                                                                           cTTGTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGACTg                             <  1:494387/140‑1 (MQ=255)
                                                                                                              gTCATCAGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGACTGGTa                          >  1:49945/1‑140 (MQ=255)
                                                                                                               tcatcaGTCTTAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGACTGGTAt                         <  1:214332/140‑1 (MQ=255)
                                                                                                                        ttAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGACTGGTATCTGAAAGTa                >  1:531581/1‑140 (MQ=255)
                                                                                                                         tAGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGACTGGTATCTGAAAGTAc               >  1:61507/1‑140 (MQ=255)
                                                                                                                          aGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGACTGGTa                          >  1:755778/1‑128 (MQ=255)
                                                                                                                          aGCGCGCCTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGACTGGTa                          <  2:755778/128‑1 (MQ=255)
                                                                                                                                ccTTCACGGAACTTTATTAATTCCTTGAATGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGATCAAAATTGAGGCAAAAATGGACTGGTATCTGAAAGTACTaaaaaa        >  2:585008/1‑140 (MQ=255)
                                                                                                                                ccTTCACGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGACTGGTATCTGAAAGTACTaaaaaa        >  1:191343/1‑140 (MQ=255)
                                                                                                                                      cGGAACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGACTGGTATCTGAAAGTACTAAAAAATTATGt  <  2:1361380/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
GTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAATTGAGGCAAAAATGGACTGGTATCTGAAAGTACTAAAAAATTATGT  >  NC_000913/3252065‑3252338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A