Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A18 F73 I1 R1 22 83.4 2868466 99.3% 2848386 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,540,721 G→T T105T (ACG→ACT)  feoB → Fe(2(+)) transporter FeoB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,540,7210GT98.9% 300.8 / ‑3.0 87T105T (ACG→ACT) feoBFe(2(+)) transporter FeoB
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base T (42/44);  total (42/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01

CCTATTCTCTGACCACCATCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACGCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTGGGCTGTCCGGTGATCCCGCTGGTT  >  NC_000913/3540585‑3540853
                                                                                                                                        |                                                                                                                                    
ccTATTCTCTGACCACCATCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTa                                                                                                                                   >  1:518899/1‑140 (MQ=255)
  tATTCTCTGACCACCATCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACa                                                                                                                                 <  2:1384947/140‑1 (MQ=255)
   aTTCTCTGACCACCATCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACaa                                                                                                                                >  2:295949/1‑140 (MQ=255)
   aTTCTCTGACCACCATCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACaa                                                                                                                                >  1:1195642/1‑140 (MQ=255)
           accaccATCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGa                                                                                                                        <  2:1330200/140‑1 (MQ=255)
           accaccATCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGa                                                                                                                        >  2:88793/1‑140 (MQ=255)
           accaccATCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGa                                                                                                                        >  2:1193013/1‑140 (MQ=255)
           accaccATCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGa                                                                                                                        >  2:661199/1‑140 (MQ=255)
           accaccATCTCATCGCAGACCTCGCTCGATGACCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGa                                                                                                                        >  1:1310477/1‑140 (MQ=255)
              accaTCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACt                                                                                                                     >  1:440874/1‑140 (MQ=255)
              accaTCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACt                                                                                                                     >  1:350096/1‑140 (MQ=255)
                caTCTCATCGCAGAGCTCGCTCGATGAGCAAATCGACTATCACTACATTTTGAGTAGCGACGCCGACCTGCTGATTAACGTGGTGTATGCGGCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCg                                                                                                                   >  2:343353/1‑140 (MQ=255)
                caTCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCg                                                                                                                   <  1:1428578/140‑1 (MQ=255)
                caTCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCg                                                                                                                   >  2:233338/1‑140 (MQ=255)
                caTCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCg                                                                                                                   >  2:755076/1‑140 (MQ=255)
                caTCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCg                                                                                                                   <  2:743105/140‑1 (MQ=255)
                caTCTCATCACAGACCTCGCTCGATGAGCAAATCGCCGGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACGCTACAACTGCTGGAACTCg                                                                                                                   <  2:319730/140‑1 (MQ=255)
                 aTCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCgg                                                                                                                  <  1:1269634/140‑1 (MQ=255)
                  tctcATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGc                                                                                                                 <  1:854283/140‑1 (MQ=255)
                  tctcATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGc                                                                                                                 <  1:1056009/140‑1 (MQ=255)
                  tctcATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGc                                                                                                                 <  2:1117705/140‑1 (MQ=255)
                   ctcATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCa                                                                                                                >  2:254354/1‑140 (MQ=255)
                        cGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGc                                                                                                                 >  1:1031902/1‑134 (MQ=255)
                        cGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGc                                                                                                                 <  2:1031902/134‑1 (MQ=255)
                          cAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTg                                                                                                         >  2:491485/1‑140 (MQ=255)
                          cAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTg                                                                                                         >  1:685575/1‑140 (MQ=255)
                           aGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGc                                                                                                        >  2:849360/1‑140 (MQ=255)
                             aCCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCAt                                                                                                      >  1:477100/1‑140 (MQ=255)
                             aCCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCAt                                                                                                      >  1:691655/1‑140 (MQ=255)
                             aCCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCAt                                                                                                      >  1:880947/1‑140 (MQ=255)
                                tcgctcgATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATtgt                                                                                                   <  2:880947/140‑1 (MQ=255)
                                tcgctcgATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATtgt                                                                                                   >  1:870382/1‑140 (MQ=255)
                                  gctcgATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTgg                                                                                                 >  1:693001/1‑140 (MQ=255)
                                    tcgATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCa                                                                                               <  1:27173/140‑1 (MQ=255)
                                       aTGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTg                                                                                            >  2:720167/1‑140 (MQ=255)
                                       aTGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTg                                                                                            >  2:1272307/1‑140 (MQ=255)
                                        tGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGa                                                                                           <  2:685575/140‑1 (MQ=255)
                                        tGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGa                                                                                           <  2:848282/140‑1 (MQ=255)
                                        tGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGa                                                                                           >  1:29884/1‑140 (MQ=255)
                                         gAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGaa                                                                                          <  1:1174575/140‑1 (MQ=255)
                                          aGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAAc                                                                                         <  2:998943/140‑1 (MQ=255)
                                             aaaTCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATg                                                                                      <  2:1216832/140‑1 (MQ=255)
                                              aaTCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGc                                                                                     >  1:1240905/1‑140 (MQ=255)
                                                tCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTc                                                                                   >  2:33831/1‑140 (MQ=255)
                                                  gCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGa                                                                                 <  1:755076/140‑1 (MQ=255)
                                                    cTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACa                                                                               <  1:1089319/140‑1 (MQ=255)
                                                      gTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACAtt                                                                             >  2:1382114/1‑140 (MQ=255)
                                                       tCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTg                                                                            >  1:364487/1‑140 (MQ=255)
                                                          cTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTAACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCg                                                                         >  1:1266502/1‑140 (MQ=255)
                                                           tACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCga                                                                        <  1:188078/140‑1 (MQ=255)
                                                            aCATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCgag                                                                       <  2:741493/140‑1 (MQ=255)
                                                               ttttGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAg                                                                    <  1:1297609/140‑1 (MQ=255)
                                                               ttttGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATAGCCGAGAAg                                                                    <  1:661199/140‑1 (MQ=255)
                                                                  tGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCaa                                                                 >  1:1379178/1‑140 (MQ=255)
                                                                    aGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCaaaa                                                               <  1:565915/140‑1 (MQ=255)
                                                                     gTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAat                                                              >  2:865540/1‑140 (MQ=255)
                                                                        gCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATAtt                                                           >  1:461911/1‑140 (MQ=255)
                                                                              ccGCCCTGCTGATTAACGTGGTGGATGCGTCTAGCCTTGGGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTAtt                                                     <  2:1315749/140‑1 (MQ=255)
                                                                              ccGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTAtt                                                     <  1:849360/140‑1 (MQ=255)
                                                                              ccGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTAtt                                                     >  1:1221955/1‑140 (MQ=255)
                                                                               cGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTg                                                    <  2:29884/140‑1 (MQ=255)
                                                                                gACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGa                                                   <  2:364487/140‑1 (MQ=255)
                                                                                gACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGa                                                   <  2:19264/140‑1 (MQ=255)
                                                                                gACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGa                                                   <  1:491485/140‑1 (MQ=255)
                                                                                      ctgATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGa                                             <  1:316185/140‑1 (MQ=255)
                                                                                                 ggtggATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCgg                                  <  2:518899/140‑1 (MQ=255)
                                                                                                 ggtggATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCgg                                  <  1:1021164/140‑1 (MQ=255)
                                                                                                 ggtggATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCgg                                  <  2:698402/140‑1 (MQ=255)
                                                                                                 ggtggATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCgg                                  <  2:1379178/140‑1 (MQ=255)
                                                                                                 ggtggATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCgg                                  <  1:865540/140‑1 (MQ=255)
                                                                                                 ggtggATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCgg                                  <  2:1266502/140‑1 (MQ=255)
                                                                                                 ggtggATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATACTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCgg                                  <  2:999998/140‑1 (MQ=255)
                                                                                                   tggATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGgcg                                >  2:1072023/1‑140 (MQ=255)
                                                                                                     gATGCGTCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGcgcg                              <  1:1193013/140‑1 (MQ=255)
                                                                                                           tCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTggg                        <  2:1221955/140‑1 (MQ=255)
                                                                                                           tCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTggg                        <  2:693001/140‑1 (MQ=255)
                                                                                                           tCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTggg                        <  2:1310477/140‑1 (MQ=255)
                                                                                                           tCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTggg                        <  1:88793/140‑1 (MQ=255)
                                                                                                           tCTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTggg                        <  2:440874/140‑1 (MQ=255)
                                                                                                            cTAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTGGGc                       >  1:1323299/1‑140 (MQ=255)
                                                                                                             tAACCTTGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTGGGCt                      <  1:782750/140‑1 (MQ=255)
                                                                                                                   tGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTGGGCTGTCCgg                >  1:343116/1‑140 (MQ=255)
                                                                                                                   tGAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTGGGCTGTCCgg                <  2:870382/140‑1 (MQ=255)
                                                                                                                    gAGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTGGGCTGTCCGGt               >  2:138748/1‑140 (MQ=255)
                                                                                                                     aGCGTAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTGGGCTGTCCGGTg              >  2:1176226/1‑140 (MQ=255)
                                                                                                                         tAACCTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTGGGCTGTCCGGTGATcc          >  2:1024034/1‑140 (MQ=255)
                                                                                                                            ccTGTACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTGGGCTGTCCGGTGATCCCGc       >  1:1015499/1‑140 (MQ=255)
                                                                                                                                tACCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTGGGCTGTCCGGTGATCCCGCTGGt   >  1:129311/1‑140 (MQ=255)
                                                                                                                                 aCCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTGGGCTGTCCGGTGATCCCGCTGGtt  >  2:718755/1‑140 (MQ=255)
                                                                                                                                 aCCTGACTCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTGGGCTGTCCGGTGATCCCGCTGGtt  <  1:1272307/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                    
CCTATTCTCTGACCACCATCTCATCGCAGACCTCGCTCGATGAGCAAATCGCCTGTCACTACATTTTGAGTGGCGACGCCGACCTGCTGATTAACGTGGTGGATGCGTCTAACCTTGAGCGTAACCTGTACCTGACGCTACAACTGCTGGAACTCGGCATTCCCTGCATTGTGGCACTGAACATGCTCGACATTGCCGAGAAGCAAAATATTCGTATTGAAATTGATGCTCTGTCGGCGCGTCTGGGCTGTCCGGTGATCCCGCTGGTT  >  NC_000913/3540585‑3540853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A