Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A18 F73 I1 R1	22	83.4	2868466	99.3%	2848386	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,377,514	C→A	G70V (GGC→GTC)	blc ←	outer membrane lipoprotein Blc

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,377,514	0	C	A	100.0%	301.7 / NA	85	G70V (GGC→GTC)	blc	outer membrane lipoprotein Blc
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (42/43); total (42/43)

CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGG  >  NC_000913/4377379‑4377650

ccGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGtc                                                                                                                                      <  1:900060/140‑1 (MQ=255)

  gCCATAGAAAGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGtcat                                                                                                                                    <  2:723924/140‑1 (MQ=255)

   ccATAGAAAGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGtcatc                                                                                                                                   >  1:847767/1‑140 (MQ=255)

   ccATAGAAAGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGtcatc                                                                                                                                   >  1:1072458/1‑140 (MQ=255)

      tAGAAAGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACg                                                                                                                                <  1:1021639/140‑1 (MQ=255)

      tAGAAAGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACg                                                                                                                                <  1:24694/140‑1 (MQ=255)

      tAGAAAGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACg                                                                                                                                <  1:883574/140‑1 (MQ=255)

        gAAAGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCa                                                                                                                              <  1:1054537/140‑1 (MQ=255)

         aaaGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAg                                                                                                                             <  1:906568/140‑1 (MQ=255)

         aaaGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAg                                                                                                                             <  1:527568/140‑1 (MQ=255)

          aaGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAgg                                                                                                                            <  2:271698/140‑1 (MQ=255)

            ggACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCt                                                                                                                          <  2:412019/140‑1 (MQ=255)

              aCCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGt                                                                                                                        >  2:258236/1‑140 (MQ=255)

              aCCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGt                                                                                                                        >  2:552009/1‑140 (MQ=255)

                  aaGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGt                                                                                                                    >  1:713937/1‑140 (MQ=255)

                       tGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCgg                                                                                                               >  2:962924/1‑140 (MQ=255)

                        gACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGt                                                                                                              >  1:441224/1‑140 (MQ=255)

                           acTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGAc                                                                                                           <  2:466525/140‑1 (MQ=255)

                             tttCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACtt                                                                                                         >  2:369075/1‑140 (MQ=255)

                             tttCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACtt                                                                                                         >  1:1044886/1‑140 (MQ=255)

                               tCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACtttt                                                                                                       >  1:526451/1‑140 (MQ=255)

                               tCAGCGCAGCGCGAGTTGGCGCGCCGGTAAAGGACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACtttt                                                                                                       >  1:1284938/1‑140 (MQ=255)

                                  gcgcagcgcGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTcc                                                                                                    <  1:1222785/140‑1 (MQ=255)

                                     cagcgcGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGt                                                                                                 <  2:670069/140‑1 (MQ=255)

                                       gcgcGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTcc                                                                                               <  1:1390873/140‑1 (MQ=255)

                                       gcgcGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTcc                                                                                               >  2:1079165/1‑140 (MQ=255)

                                       gcgcGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTcc                                                                                               <  2:832490/140‑1 (MQ=255)

                                        cgcgAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCa                                                                                              >  2:1246396/1‑140 (MQ=255)

                                             gTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTc                                                                                         >  2:1359513/1‑140 (MQ=255)

                                                   gcgcCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCg                                                                                   <  1:1246396/140‑1 (MQ=255)

                                                             aGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCaaaa                                                                         <  2:886138/140‑1 (MQ=255)

                                                                 cGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGATATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACggg                                                                     <  2:120367/140‑1 (MQ=255)

                                                                 cGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACggg                                                                     <  1:1371632/140‑1 (MQ=255)

                                                                 cGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACggg                                                                     <  2:860427/140‑1 (MQ=255)

                                                                 cGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACggg                                                                     >  1:767536/1‑140 (MQ=255)

                                                                 cGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACggg                                                                     <  2:847767/140‑1 (MQ=255)

                                                                 cGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACggg                                                                     <  2:275771/140‑1 (MQ=255)

                                                                 cGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACggg                                                                     <  2:1077832/140‑1 (MQ=255)

                                                                  gCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGc                                                                    <  2:1284938/140‑1 (MQ=255)

                                                                  gCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGc                                                                    <  1:1374623/140‑1 (MQ=255)

                                                                  gCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGc                                                                    <  2:721450/140‑1 (MQ=255)

                                                                  gCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGc                                                                    <  2:218849/140‑1 (MQ=255)

                                                                   cTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCa                                                                   >  2:1178930/1‑140 (MQ=255)

                                                                     ttCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAAt                                                                 <  1:852357/140‑1 (MQ=255)

                                                                        ccTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAAtctc                                                              >  2:646923/1‑140 (MQ=255)

                                                                        ccTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAAtctc                                                              <  1:930318/140‑1 (MQ=255)

                                                                         cTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCa                                                             >  1:1410968/1‑140 (MQ=255)

                                                                          ttCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCAt                                                            <  1:1079165/140‑1 (MQ=255)

                                                                           tCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATa                                                           >  2:597114/1‑140 (MQ=255)

                                                                             aCTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATAcc                                                         <  1:369075/140‑1 (MQ=255)

                                                                             aCTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATAcc                                                         <  1:258236/140‑1 (MQ=255)

                                                                              ctctGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCa                                                        <  1:962924/140‑1 (MQ=255)

                                                                                ctgctgCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAgg                                                      >  2:668683/1‑140 (MQ=255)

                                                                                  gctgcCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTa                                                    <  1:1071097/140‑1 (MQ=255)

                                                                                  gctgcCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTa                                                    <  2:216401/140‑1 (MQ=255)

                                                                                  gctgcCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTa                                                    >  2:182313/1‑140 (MQ=255)

                                                                                  gctgcCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTa                                                    >  1:361161/1‑140 (MQ=255)

                                                                                   ctgcCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTAc                                                   <  1:112603/140‑1 (MQ=255)

                                                                                   ctgcCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTAc                                                   <  2:1044886/140‑1 (MQ=255)

                                                                                   ctgcCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTAc                                                   <  1:22536/140‑1 (MQ=255)

                                                                                         caTTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGAt                                             >  1:892650/1‑140 (MQ=255)

                                                                                           ttCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATaa                                           >  1:513351/1‑140 (MQ=255)

                                                                                           ttCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATaa                                           >  2:1346256/1‑140 (MQ=255)

                                                                                                ctGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGttt                                      >  2:1183320/1‑140 (MQ=255)

                                                                                                    cAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCg                                  >  2:877054/1‑140 (MQ=255)

                                                                                                    cAGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCg                                  >  2:1199264/1‑140 (MQ=255)

                                                                                                     aGGGTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGt                                 <  1:120022/140‑1 (MQ=255)

                                                                                                      gggTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTc                                >  2:1124405/1‑140 (MQ=255)

                                                                                                      gggTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTc                                >  2:441925/1‑140 (MQ=255)

                                                                                                        gTTATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGa                              >  2:206317/1‑140 (MQ=255)

                                                                                                         ttATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGaa                             <  2:713937/140‑1 (MQ=255)

                                                                                                         ttATAGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGaa                             <  2:495080/140‑1 (MQ=255)

                                                                                                            taGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAatt                          <  2:1034102/140‑1 (MQ=255)

                                                                                                             aGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAatta                         >  1:1297689/1‑140 (MQ=255)

                                                                                                             aGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAatta                         >  1:1080378/1‑140 (MQ=255)

                                                                                                             aGCCTTTATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAatta                         >  2:1151947/1‑140 (MQ=255)

                                                                                                                 tttATTAATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGCCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTta                     >  2:1246391/1‑140 (MQ=255)

                                                                                                                   tattaATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTtact                   >  2:469472/1‑140 (MQ=255)

                                                                                                                   tattaATGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTtact                   >  2:1401452/1‑140 (MQ=255)

                                                                                                                         tGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTc             >  1:727607/1‑140 (MQ=255)

                                                                                                                         tGACATTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTc             >  1:1190607/1‑140 (MQ=255)

                                                                                                                             aTTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTcacgc         >  2:710322/1‑140 (MQ=255)

                                                                                                                             aTTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTcacgc         >  1:1384176/1‑140 (MQ=255)

                                                                                                                             aTTCAGGCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTcacgc         >  2:1363019/1‑140 (MQ=255)

                                                                                                                                  ggCCGACGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTcacgccacgc    <  1:1359513/140‑1 (MQ=255)

                                                                                                                                   gccgacGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCAcgcg   >  1:1315907/1‑140 (MQ=255)

                                                                                                                                   gccgacGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCAcgcg   <  1:552009/140‑1 (MQ=255)

                                                                                                                                   gccgacGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCAcgcg   <  2:767536/140‑1 (MQ=255)

                                                                                                                                   gccgacGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCAcgcg   >  1:185630/1‑140 (MQ=255)

                                                                                                                                    ccgacgTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACgcgg  <  2:1384176/140‑1 (MQ=255)

                                                                                                                                    ccgacgTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGACAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACgcgg  <  2:1085886/140‑1 (MQ=255)

                                                                                                                                    ccgacgTCATCACGCAGGCTATATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACgcgg  <  1:407259/140‑1 (MQ=255)

CCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGTTGGTGCGCCGGTAAAGTACGCTTTCCCTTCACTCTGCTGCCACATTCCTCTGTCAGGGTTATAGCCTTTATTAATGACATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGG  >  NC_000913/4377379‑4377650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A