Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F73 I1 R1	30	54.0	1878228	99.2%	1863202	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,942,090	T→A	noncoding (283/1542 nt)	rrsC →	16S ribosomal RNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,942,090	0	T	A	100.0%	88.9 / NA	41	noncoding (283/1542 nt)	rrsC	16S ribosomal RNA
Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (24/17); total (24/17)

TAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAA  >  NC_000913/3941957‑3942171

tAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAg                                                                             <  2:556375/140‑1 (MQ=17)

tAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAg                                                                             <  1:192663/140‑1 (MQ=17)

tAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAg                                                                             <  1:653127/140‑1 (MQ=17)

     actGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGt                                                                        >  2:430506/1‑140 (MQ=17)

      ctGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGACCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTc                                                                       >  2:665715/1‑140 (MQ=17)

        ggAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTg                                                                     >  2:630125/1‑140 (MQ=17)

        ggAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTg                                                                     >  2:369060/1‑140 (MQ=17)

        ggAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTg                                                                     <  2:712866/140‑1 (MQ=17)

         gAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTga                                                                    >  2:465172/1‑140 (MQ=17)

           aaCGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTgaga                                                                  >  1:87082/1‑140 (MQ=17)

              ggTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGa                                                               >  2:905352/1‑140 (MQ=17)

              ggTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGa                                                               >  1:612269/1‑140 (MQ=17)

                      aTACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGc                                                       <  1:905352/140‑1 (MQ=17)

                      aTACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGc                                                       <  1:680897/140‑1 (MQ=17)

                            cATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGagag                                                                 <  1:367040/124‑1 (MQ=17)

                            cATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                                                 >  1:410660/1‑140 (MQ=17)

                            cATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                                                 >  2:768161/1‑140 (MQ=17)

                            cATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                                                 >  1:626472/1‑140 (MQ=17)

                            cATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                                                 >  2:710288/1‑140 (MQ=17)

                            cATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                                                 >  2:52057/1‑140 (MQ=17)

                            cATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGGGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGagag                                                                 >  2:367040/1‑124 (MQ=17)

                            cATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGAGGGGTAACAGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                                                 >  1:850302/1‑140 (MQ=12)

                             aTAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTg                                                >  1:733995/1‑140 (MQ=17)

                             aTAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTg                                                <  2:891718/140‑1 (MQ=17)

                             aTAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGACACACTg                                                <  2:384052/140‑1 (MQ=17)

                                    cGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTga                                         >  1:730466/1‑140 (MQ=17)

                                    cGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTga                                         >  2:561148/1‑140 (MQ=17)

                                      cAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTgaga                                       >  1:714705/1‑140 (MQ=17)

                                        aGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca                                     <  2:714705/140‑1 (MQ=17)

                                        aGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca                                     <  2:626472/140‑1 (MQ=17)

                                            cAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGt                                 <  2:733995/140‑1 (MQ=17)

                                              aaGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTcc                               >  2:375321/1‑140 (MQ=17)

                                                gagGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAg                             <  1:655735/140‑1 (MQ=17)

                                                    gggACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTc                         >  1:706254/1‑140 (MQ=18)

                                                     ggACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTg                                          <  1:898968/122‑1 (MQ=17)

                                                     ggACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTg                                          >  2:898968/1‑122 (MQ=18)

                                                           tCGGGCCTCTTGCCATCAGATGAGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACCCGGTCCAGACTCCTACggg                  >  2:445452/1‑140 (MQ=12)

                                                                   ctTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGgcagca          <  1:52057/140‑1 (MQ=17)

                                                                   ctTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGgcagca          >  1:24464/1‑140 (MQ=18)

                                                                        cATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTggg     <  2:612269/140‑1 (MQ=17)

                                                                        cATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTggg     <  2:706254/140‑1 (MQ=17)

                                                                           cAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGAACCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGaa  >  1:913730/1‑140 (MQ=14)

TAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAA  >  NC_000913/3941957‑3942171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A