Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	124	90.1	3003320	99.2%	2979293	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	796,360	A→G	T167A (ACC→GCC)	modB →	molybdate ABC transporter membrane subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	796,360	0	A	G	97.3%	264.0 / ‑2.7	74	T167A (ACC→GCC)	modB	molybdate ABC transporter membrane subunit
Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (30/42); total (31/43)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01

AACTGGAACAGGCCGCAAGAACACTGGGGGCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAACCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCTATTGCGCTGGCGATGAT  >  NC_000913/796223‑796493

aaCTTGAACAGGCCGCAAGAACACTGGGGGCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGcc                                                                                                                                     >  1:453463/1‑140 (MQ=255)

aaCTGGAACAGGCCGCAAGAACACTGGGGGCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGcc                                                                                                                                     >  1:936141/1‑140 (MQ=255)

  cTGGAACAGGCCGCAAGAACACTGGGGGCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCAt                                                                                                                                   <  1:226253/140‑1 (MQ=255)

       aCAGGCCGCAAGAACACTGGGGGCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCt                                                                                                                              >  2:901126/1‑140 (MQ=255)

       aCAGGCCGCAAGAACACTGGGGGCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCt                                                                                                                              <  1:1350485/140‑1 (MQ=255)

             cGCAAGAACACTGGGGGCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTgtgt                                                                                                                        >  1:844024/1‑140 (MQ=255)

             cGCAAGAACACTGGGGGCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTgtgt                                                                                                                        >  1:761016/1‑140 (MQ=255)

                 aGAACACTGGGGGCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGaa                                                                                                                    <  1:559940/140‑1 (MQ=255)

                 aGAACACTGGGGGCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGaa                                                                                                                    <  1:733633/140‑1 (MQ=255)

                         gggggCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTg                                                                                                            >  2:1060384/1‑140 (MQ=255)

                         gggggCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTg                                                                                                            >  2:377936/1‑140 (MQ=255)

                          ggggCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTgg                                                                                                           >  1:68570/1‑140 (MQ=255)

                             gCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGa                                                                                                        >  1:777192/1‑140 (MQ=255)

                                 ggCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAAcg                                                                                                    >  2:783924/1‑140 (MQ=255)

                                              tttCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCtt                                                                                       <  2:625839/140‑1 (MQ=255)

                                                 cTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTg                                                                                    <  2:276887/140‑1 (MQ=255)

                                                  tttACTATCGCGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACTTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGc                                                                                   <  1:988759/140‑1 (MQ=255)

                                                  tttACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGATCATTCCTGGTGAAACGCGAACCATTCCTTCTGc                                                                                   <  2:1045806/140‑1 (MQ=255)

                                                  tttACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGc                                                                                   <  1:481757/140‑1 (MQ=255)

                                                  tttACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGc                                                                                   <  1:782210/140‑1 (MQ=255)

                                                  tttACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGc                                                                                   <  2:1299452/140‑1 (MQ=255)

                                                  tttACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGc                                                                                   <  2:453463/140‑1 (MQ=255)

                                                  tttACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGc                                                                                   <  1:581626/140‑1 (MQ=255)

                                                  tttACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGc                                                                                   <  2:276229/140‑1 (MQ=255)

                                                  tttACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGc                                                                                   <  1:1069579/140‑1 (MQ=255)

                                                  tttACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGc                                                                                   <  2:250985/140‑1 (MQ=255)

                                                  tttACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGc                                                                                   <  2:1402675/140‑1 (MQ=255)

                                                    tACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCa                                                                                 >  2:1468630/1‑140 (MQ=255)

                                                     ccTATCACGTTACCGCTGACCTTACCAGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCAt                                                                                <  1:64587/139‑1 (MQ=255)

                                                       tATCAGGTTCCCGGTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGGGCAGCCATCACCTTTGTGTCGACCATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGt                                                                              <  2:1400458/140‑1 (MQ=255)

                                                       tATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGt                                                                              <  2:908552/140‑1 (MQ=255)

                                                        aTCACGTTACCGCTGGCCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGta                                                                             <  1:1186846/140‑1 (MQ=255)

                                                          cACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGtata                                                                           >  2:175580/1‑140 (MQ=255)

                                                                aCCGCTGACCTTACCGGTAATTATTGGTGGTACGGTACTGGCTTTTGCTCGGTCTCTCGGTGAGTTCGGAGCAGCCATCACCTTTTTGTGGTACATTACTGGTGAAACGCGAACCATTCCTTCTGTCATGTATACCCtta                                                                     >  2:1231577/1‑138 (MQ=255)

                                                                aCCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGa                                                                     <  1:417629/140‑1 (MQ=255)

                                                                   gCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATcc                                                                  >  1:1244876/1‑140 (MQ=255)

                                                                   gCTGACCTTACCAGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGCTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATcc                                                                  >  1:1421102/1‑140 (MQ=255)

                                                                    cTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGc                                                                                   >  1:270483/1‑122 (MQ=255)

                                                                    cTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGc                                                                                   <  2:270483/122‑1 (MQ=255)

                                                                    cTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCa                                                                 >  1:1089527/1‑140 (MQ=255)

                                                                      gACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCAAGTATACCCTGATCCAgc                                                               >  2:541984/1‑139 (MQ=255)

                                                                       aCCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGAc                                                              >  1:1068816/1‑140 (MQ=255)

                                                                       aCCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGAc                                                              >  2:928835/1‑140 (MQ=255)

                                                                         cTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGAccc                                                            >  1:1078214/1‑140 (MQ=255)

                                                                           tACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGTTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGAccccc                                                          >  2:720001/1‑140 (MQ=255)

                                                                           tACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGAccccc                                                          >  2:281594/1‑140 (MQ=255)

                                                                            aCCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAACCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCcg                                                         >  1:692802/1‑140 (MQ=255)

                                                                             ccGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCcgg                                                        <  2:777192/140‑1 (MQ=255)

                                                                                 gAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCggg                                                    <  1:783924/140‑1 (MQ=255)

                                                                                   attattGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGa                                                  <  2:68570/140‑1 (MQ=255)

                                                                                           tgGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAg                                          >  2:26487/1‑140 (MQ=255)

                                                                                            ggtacggtacTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAgc                                         >  2:680253/1‑140 (MQ=255)

                                                                                              tacggtacTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAgcgg                                       <  1:374092/140‑1 (MQ=255)

                                                                                                 ggtacTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCga                                    >  2:663575/1‑140 (MQ=255)

                                                                                                    acTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGAc                                 <  1:901126/140‑1 (MQ=255)

                                                                                                     cTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACt                                <  1:928835/140‑1 (MQ=255)

                                                                                                       ggCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACtgt                              >  1:275349/1‑140 (MQ=255)

                                                                                                         cTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGc                            <  2:1421102/140‑1 (MQ=255)

                                                                                                         cTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGc                            <  1:896750/140‑1 (MQ=255)

                                                                                                          ttttGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCa                           >  2:955185/1‑140 (MQ=255)

                                                                                                          ttttGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCa                           <  1:175580/140‑1 (MQ=255)

                                                                                                           tttGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCat                          <  2:835989/140‑1 (MQ=255)

                                                                                                             tGCTCGTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCatta                        >  1:754088/1‑140 (MQ=255)

                                                                                                              gCTCGTTCTCTCGGTGAGTTGGGTGCAGCCATCGCCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCattat                       <  2:960260/140‑1 (MQ=255)

                                                                                                                  gTTCTCTCGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCt                   >  1:219164/1‑140 (MQ=255)

                                                                                                                      tctcGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCTATTg               <  1:720001/140‑1 (MQ=255)

                                                                                                                        tcGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCTATTgcg             <  2:1068816/140‑1 (MQ=255)

                                                                                                                         cGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCTATTgcgc            <  1:281594/140‑1 (MQ=255)

                                                                                                                         cGGTGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCTATTgcgc            <  1:1060384/140‑1 (MQ=255)

                                                                                                                            tGAGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCTATTGCGCTgg         <  1:1073561/140‑1 (MQ=255)

                                                                                                                              aGTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCTATTGCGCTGGCg       >  1:1241408/1‑140 (MQ=255)

                                                                                                                               gTTTGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCTATTGCGCTGGCga      <  1:680253/140‑1 (MQ=255)

                                                                                                                                tttGGTGCAGCGATCACCTTTGTGTCGAGCATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGCCCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCTATTGCGCTGGCgat     <  1:1226986/140‑1 (MQ=255)

                                                                                                                                  tGGTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCCGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCTATTGCGCTGGCgatga   <  2:1089527/140‑1 (MQ=255)

                                                                                                                                  tGGTGCAACCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCTATTGCGCTGGCgatga   <  2:276690/140‑1 (MQ=255)

                                                                                                                                   ggTGCAGCCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCTATTGCGCTGGCgatgat  <  2:604750/140‑1 (MQ=255)

AACTGGAACAGGCCGCAAGAACACTGGGGGCCGGGCGCTGGCGCGTTTTCTTTACTATCACGTTACCGCTGACCTTACCGGGAATTATTGTTGGTACGGTACTGGCTTTTGCTCGTTCTCTCGGTGAGTTTGGTGCAACCATCACCTTTGTGTCGAACATTCCTGGTGAAACGCGAACCATTCCTTCTGCCATGTATACCCTGATCCAGACCCCCGGCGGGGAAAGTGGAGCGGCGAGACTGTGCATTATTTCTATTGCGCTGGCGATGAT  >  NC_000913/796223‑796493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A