Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 124 90.1 3003320 99.2% 2979293 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,834,213 C→T A33V (GCG→GTG)  ydjY → 4Fe‑4S ferredoxin‑type domain‑containing protein YdjY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,834,2130CT98.7% 250.0 / ‑4.2 77A33V (GCG→GTG) ydjY4Fe‑4S ferredoxin‑type domain‑containing protein YdjY
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base T (38/38);  total (39/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.79e-01

CAGCCCACTTACTCACCCAAAAAATGAAGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGT  >  NC_000913/1834078‑1834347
                                                                                                                                       |                                                                                                                                      
cAGCCCACTTACTCACCCAAAAAATGAAGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATgtggcg                                                                                                                                    >  2:807170/1‑140 (MQ=255)
   cccACTTACTCACCCAAAAAATGAAGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCa                                                                                                                                 <  2:1315476/140‑1 (MQ=255)
    ccACTTACTCACCCAAAAAATGAAGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCaa                                                                                                                                <  2:25820/140‑1 (MQ=255)
           cTCACCCAAAAAATGAAGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGa                                                                                                                         <  1:1053910/140‑1 (MQ=255)
           cTCACCCAAAAAATGAAGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGa                                                                                                                         <  2:115588/140‑1 (MQ=255)
             cACCCAAAAAATGAAGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAAt                                                                                                                       >  1:884027/1‑140 (MQ=255)
                 cAAAAAATGAAGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCCACAGGGGAATacgc                                                                                                                   >  2:787730/1‑139 (MQ=255)
                 cAAAAAATGAAGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATacga                                                                                                                   >  1:1213818/1‑140 (MQ=255)
                  aaaaaaTGAAGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATacgac                                                                                                                  >  2:682298/1‑140 (MQ=255)
                           aGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCg                                                                                                         <  2:1237127/140‑1 (MQ=255)
                             gATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGaa                                                                                                       <  1:527559/140‑1 (MQ=255)
                               tAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACa                                                                                                     <  2:1229661/140‑1 (MQ=255)
                                aGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAg                                                                                                    >  2:320484/1‑140 (MQ=255)
                                 gAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGc                                                                                                   <  1:310999/140‑1 (MQ=255)
                                       tGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAAccc                                                                                             >  1:985601/1‑139 (MQ=255)
                                       tGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCg                                                                                             <  1:682298/140‑1 (MQ=255)
                                          tGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTg                                                                                          >  2:587524/1‑140 (MQ=255)
                                            cAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCg                                                                                        >  2:1167936/1‑140 (MQ=255)
                                                 ttattCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGTTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCg                                                                                   >  1:698460/1‑140 (MQ=255)
                                                 ttattCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCg                                                                                   <  1:807170/140‑1 (MQ=255)
                                                 ttattCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCg                                                                                   >  1:729707/1‑140 (MQ=255)
                                                 ttattCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCg                                                                                   <  1:100518/140‑1 (MQ=255)
                                                  tattCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGa                                                                                  <  2:829582/140‑1 (MQ=255)
                                                  tattCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGa                                                                                  <  2:1179665/140‑1 (MQ=255)
                                                  tattCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGa                                                                                  >  2:732216/1‑140 (MQ=255)
                                                    ttCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATg                                                                                >  1:977627/1‑140 (MQ=255)
                                                    ttCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATg                                                                                <  1:645688/140‑1 (MQ=255)
                                                    ttCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATg                                                                                <  1:904002/140‑1 (MQ=255)
                                                      cAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGcc                                                                              <  2:279076/140‑1 (MQ=255)
                                                         tgtCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAAt                                                                           >  2:2989/1‑140 (MQ=255)
                                                         tgtCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAAt                                                                           >  1:272394/1‑140 (MQ=255)
                                                         tgtCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAAt                                                                           <  2:911818/140‑1 (MQ=255)
                                                         tgtCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGCGTCGGTGGCaaa                                                                           >  2:465287/1‑139 (MQ=255)
                                                           tCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATaa                                                                         >  1:981080/1‑140 (MQ=255)
                                                           tCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATaa                                                                         >  1:135810/1‑140 (MQ=255)
                                                              tGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCa                                                                      <  2:219364/140‑1 (MQ=255)
                                                              tGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCa                                                                      <  1:1197333/140‑1 (MQ=255)
                                                                  aaaaaGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACg                                                                  <  1:555438/140‑1 (MQ=255)
                                                                          cTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAAACGCTGCGTGTCGATGCCAATAACCATACGGTAACCAt                                                          >  1:184671/1‑140 (MQ=255)
                                                                           tGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATg                                                         <  2:884027/140‑1 (MQ=255)
                                                                           tGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATg                                                         >  1:534894/1‑140 (MQ=255)
                                                                                 cACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTg                                                   <  2:450873/140‑1 (MQ=255)
                                                                                  aCTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGc                                                  >  1:724516/1‑140 (MQ=255)
                                                                                       gTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAAtt                                             >  1:734290/1‑140 (MQ=255)
                                                                                       gTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAAtt                                             >  2:131506/1‑140 (MQ=255)
                                                                                       gTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAAtt                                             >  1:1486006/1‑140 (MQ=255)
                                                                                           aCTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATg                                         >  1:1240552/1‑140 (MQ=255)
                                                                                             tGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGt                                       <  2:977627/140‑1 (MQ=255)
                                                                                              ggCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTc                                      >  1:1238091/1‑140 (MQ=255)
                                                                                                cTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGt                                    >  1:12398/1‑140 (MQ=255)
                                                                                                  gTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGttt                                  >  1:213457/1‑140 (MQ=255)
                                                                                                  gTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGttt                                  >  1:414565/1‑140 (MQ=255)
                                                                                                  gTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGttt                                  >  1:1226527/1‑140 (MQ=255)
                                                                                                   ttGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTc                                 <  1:1414000/140‑1 (MQ=255)
                                                                                                    tGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTcc                                >  1:121037/1‑140 (MQ=255)
                                                                                                         ggCTTAGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCAcc                           >  1:686351/1‑140 (MQ=255)
                                                                                                              aGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACcgacga                      >  2:1375489/1‑140 (MQ=255)
                                                                                                              aGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACcgacga                      >  1:439669/1‑140 (MQ=255)
                                                                                                              aGCGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACcgacga                      >  1:953420/1‑140 (MQ=255)
                                                                                                                cGGCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGaca                    <  1:320484/140‑1 (MQ=255)
                                                                                                                  gCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACt                  <  2:228476/140‑1 (MQ=255)
                                                                                                                  gCTGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACt                  <  2:320571/140‑1 (MQ=255)
                                                                                                                    tGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCg                <  1:732216/140‑1 (MQ=255)
                                                                                                                    tGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCg                >  1:453978/1‑140 (MQ=255)
                                                                                                                    tGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCg                >  1:920054/1‑140 (MQ=255)
                                                                                                                    tGCGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCg                <  2:1240552/140‑1 (MQ=255)
                                                                                                                      cGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTc              <  2:724516/140‑1 (MQ=255)
                                                                                                                      cGATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAA‑CATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCa             <  2:272394/140‑1 (MQ=255)
                                                                                                                       gATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCa             <  2:1486006/140‑1 (MQ=255)
                                                                                                                       gATCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCa             <  2:156910/140‑1 (MQ=255)
                                                                                                                        aTCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCAc            >  1:1092250/1‑140 (MQ=255)
                                                                                                                        aTCAACAAGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCAc            >  2:1224422/1‑140 (MQ=255)
                                                                                                                            acaaGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTa        <  2:151041/140‑1 (MQ=255)
                                                                                                                             caaGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTAt       <  1:1375489/140‑1 (MQ=255)
                                                                                                                             caaGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTAt       <  1:787730/140‑1 (MQ=255)
                                                                                                                             caaGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTAt       <  2:1213818/140‑1 (MQ=255)
                                                                                                                              aaGAGAATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTAtt      <  1:131506/140‑1 (MQ=255)
                                                                                                                                  gaATGTGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTgtgt  >  1:533529/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                      
CAGCCCACTTACTCACCCAAAAAATGAAGGATAGAACGATGTTGCAACATTATTCAGTGTCATGGAAAAAAGGACTGGCTGCACTCTGTTTACTGGCTGTTGCTGGGCTTAGCGGCTGCGATCAACAAGAGAATGCGGCGGCAAAAGTGGAATACGACGGACTTTCGAACAGCCAACCGCTGCGTGTCGATGCCAATAACCATACGGTAACCATGCTGGTGCAAATTAATGGTCGTTTCCTCACCGACGACACTCGTCACGGTATTGTGT  >  NC_000913/1834078‑1834347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A