Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 124 90.1 3003320 99.2% 2979293 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,844,405 T→C D156G (GAC→GGC)  ynjI ← DUF1266 domain‑containing protein YnjI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,844,4050TC100.0% 241.7 / NA 65D156G (GAC→GGC) ynjIDUF1266 domain‑containing protein YnjI
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (38/27);  total (38/27)

TTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGA  >  NC_000913/1844273‑1844540
                                                                                                                                    |                                                                                                                                       
tttGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAgg                                                                                                                                  <  1:868724/140‑1 (MQ=255)
 ttGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGa                                                                                                                                 <  1:746834/140‑1 (MQ=255)
     tttAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGca                                                                                                                             <  2:1260834/140‑1 (MQ=255)
       tAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGcaca                                                                                                                           <  1:239116/140‑1 (MQ=255)
       tAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGcaca                                                                                                                           <  1:1107255/140‑1 (MQ=255)
       tAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGcaca                                                                                                                           <  1:1445313/140‑1 (MQ=255)
             tATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGatat                                                                                                                     <  1:218160/140‑1 (MQ=255)
              aTTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCTATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATAtt                                                                                                                    >  1:1342976/1‑140 (MQ=255)
                      cATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTa                                                                                                            >  1:643774/1‑140 (MQ=255)
                       aTGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTAt                                                                                                           >  2:261844/1‑140 (MQ=255)
                         ggTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCt                                                                                                         <  1:764162/140‑1 (MQ=255)
                             gCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGc                                                                                                     >  1:1038496/1‑140 (MQ=255)
                             gCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGc                                                                                                     <  2:1218356/140‑1 (MQ=255)
                             gCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTAACTTTGc                                                                                                     <  2:276772/140‑1 (MQ=255)
                              ccAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGcc                                                                                                    <  1:561316/140‑1 (MQ=255)
                                 gaaagaaaATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAgg                                                                                                 <  1:1189902/140‑1 (MQ=255)
                                            cTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTc                                                                                      >  2:210546/1‑140 (MQ=255)
                                             tCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTcg                                                                                     <  1:176736/140‑1 (MQ=255)
                                                aTTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCgg                                                                                  >  2:996665/1‑140 (MQ=255)
                                                 ttAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGc                                                                                 <  1:125307/140‑1 (MQ=255)
                                                   aaGGCGCAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCa                                                                               <  2:938591/140‑1 (MQ=255)
                                                    aGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAg                                                                              <  1:1048790/140‑1 (MQ=255)
                                                         caATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGTACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTc                                                                         >  2:1491985/1‑140 (MQ=255)
                                                         caATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTc                                                                         >  1:864377/1‑140 (MQ=255)
                                                         caATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTc                                                                         >  1:714844/1‑140 (MQ=255)
                                                         caATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTc                                                                         >  2:398692/1‑140 (MQ=255)
                                                         caATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTCCAGGCTTTCGCGGCCAGAACTc                                                                         >  1:1039389/1‑140 (MQ=255)
                                                          aaTAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTcc                                                                        >  1:309851/1‑140 (MQ=255)
                                                           aTAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCa                                                                       <  1:380175/140‑1 (MQ=255)
                                                                 ttCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGttt                                                                 >  1:765687/1‑140 (MQ=255)
                                                                        tCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCa                                                          <  2:643774/140‑1 (MQ=255)
                                                                        tCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCa                                                          <  2:102425/140‑1 (MQ=255)
                                                                             gATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCt                                                     <  2:878869/140‑1 (MQ=255)
                                                                                  cccATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGa                                                >  1:355420/1‑140 (MQ=255)
                                                                                    cATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATa                                              >  1:106381/1‑140 (MQ=255)
                                                                                    cATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATa                                              >  2:254858/1‑140 (MQ=255)
                                                                                    cATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATa                                              >  1:330242/1‑140 (MQ=255)
                                                                                     aTTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAg                                             <  1:996665/140‑1 (MQ=255)
                                                                                           ccTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGa                                       >  2:11791/1‑140 (MQ=255)
                                                                                             tctAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATa                                     <  2:864377/140‑1 (MQ=255)
                                                                                              ctAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATaa                                    >  1:735694/1‑140 (MQ=255)
                                                                                              ctAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATaa                                    >  2:1184073/1‑140 (MQ=255)
                                                                                                      tCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGAt                            >  1:1264038/1‑140 (MQ=255)
                                                                                                      tCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGAt                            >  1:517811/1‑140 (MQ=255)
                                                                                                      tCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGCATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGAt                            >  1:1490125/1‑140 (MQ=255)
                                                                                                      tCGCGTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTCGAAGGAATCTTTGCCAGGGTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGAt                            >  1:1278839/1‑140 (MQ=255)
                                                                                                       cgcgTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATc                           >  2:1341143/1‑140 (MQ=255)
                                                                                                       cgcgTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATc                           >  1:645672/1‑140 (MQ=255)
                                                                                                        gcgTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCa                          >  1:968653/1‑140 (MQ=255)
                                                                                                         cgTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCaa                         >  1:567333/1‑140 (MQ=255)
                                                                                                         cgTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCaa                         >  2:1456905/1‑140 (MQ=255)
                                                                                                         cgTCTTTTACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCaa                         >  1:904813/1‑140 (MQ=255)
                                                                                                               ttACTTATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAg                   <  2:1342976/140‑1 (MQ=255)
                                                                                                                   ttATGATATCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGcc               <  1:261844/140‑1 (MQ=255)
                                                                                                                        atatCGATCGAGCCAAAAGGAAGTACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTaa          <  1:1491985/140‑1 (MQ=255)
                                                                                                                        atatCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTaa          >  1:1479513/1‑140 (MQ=255)
                                                                                                                        atatCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTaa          <  1:398692/140‑1 (MQ=255)
                                                                                                                         tatCGATCGAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAAc         >  1:1485073/1‑140 (MQ=255)
                                                                                                                          atcgatcgAGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACt        >  1:548179/1‑140 (MQ=255)
                                                                                                                           tcgatcgaGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACtt       >  2:144731/1‑140 (MQ=255)
                                                                                                                             gatcgaGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTtct     <  2:106381/140‑1 (MQ=255)
                                                                                                                              atcgaGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTtctc    >  2:109258/1‑140 (MQ=255)
                                                                                                                              atcgaGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTtctc    >  1:764529/1‑140 (MQ=255)
                                                                                                                               tcgaGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCg   >  2:1327091/1‑140 (MQ=255)
                                                                                                                                cgaGCCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGa  >  2:1403630/1‑140 (MQ=255)
                                                                                                                                    |                                                                                                                                       
TTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACTTCTCGA  >  NC_000913/1844273‑1844540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A