Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 124 90.1 3003320 99.2% 2979293 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,137,847 T→C intergenic (‑604/‑55) wza ← / → yegH outer membrane polysaccharide export protein Wza/inner membrane protein YegH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,137,8470TC98.6% 263.8 / ‑5.2 71intergenic (‑604/‑55)wza/yegHouter membrane polysaccharide export protein Wza/inner membrane protein YegH
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (45/25);  minor base G (1/0);  total (46/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATAGTGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTTATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAACTGGTCCTCGGCATTGATA  >  NC_000913/2137713‑2137980
                                                                                                                                      |                                                                                                                                     
ataGTGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCa                                                                                                                                  <  1:344480/140‑1 (MQ=255)
    tgtCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGAt                                                                                                                              >  1:1090376/1‑140 (MQ=255)
    tgtCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGAt                                                                                                                              >  2:1199109/1‑140 (MQ=255)
    tgtCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGAt                                                                                                                              >  2:1414446/1‑140 (MQ=255)
    tgtCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGAt                                                                                                                              >  1:1285071/1‑140 (MQ=255)
    tgtCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGAt                                                                                                                              >  2:732806/1‑140 (MQ=255)
    tgtCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGAt                                                                                                                              >  2:543810/1‑140 (MQ=255)
    tgtCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGAt                                                                                                                              >  1:1501040/1‑140 (MQ=255)
      tctcCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCg                                                                                                                            >  2:827659/1‑140 (MQ=255)
      tctcCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCg                                                                                                                            >  2:1480603/1‑140 (MQ=255)
        tcCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGaa                                                                                                                          >  2:1452226/1‑140 (MQ=255)
              tGCGATATTTCTTAAATAATGTTTTATTATTACCACTTCTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGa                                                                                                                    >  2:1155699/1‑140 (MQ=255)
                 gATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACAt                                                                                                                 <  1:857584/140‑1 (MQ=255)
                 gATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTCGCCCCGATTCATCCATGATCGAATTGTGACAt                                                                                                                 <  2:550805/140‑1 (MQ=255)
                             ataatGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGAc                                                                                                                   <  1:157735/126‑1 (MQ=255)
                             ataatGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGAc                                                                                                                   >  2:157735/1‑126 (MQ=255)
                               aatGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGa                                                                                                   >  1:1232967/1‑140 (MQ=255)
                                 tGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAAt                                                                                                 >  1:405578/1‑140 (MQ=255)
                                 tGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAAt                                                                                                 <  2:1090376/140‑1 (MQ=255)
                                   ttttATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAg                                                                                               >  2:1445998/1‑140 (MQ=255)
                                      tattattaCCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGtt                                                                                            <  2:411922/140‑1 (MQ=255)
                                      tattattaCCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGtt                                                                                            >  1:1421418/1‑140 (MQ=255)
                                          attaCCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGt                                                                                        <  1:1408292/140‑1 (MQ=255)
                                             aCCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGtact                                                                                     >  2:633136/1‑140 (MQ=255)
                                             aCCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGtact                                                                                     <  1:1414446/140‑1 (MQ=255)
                                                 cTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGtacttact                                                                                 <  2:1289681/140‑1 (MQ=255)
                                                  ttttAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTa                                                                                >  1:618141/1‑140 (MQ=255)
                                                  ttttAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTa                                                                                >  2:1115559/1‑140 (MQ=255)
                                                   tttAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTat                                                                               >  2:850176/1‑140 (MQ=255)
                                                       aTTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTatggaa                                                                           <  1:827659/140‑1 (MQ=255)
                                                        ttCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTatggaat                                                                          >  1:51784/1‑140 (MQ=255)
                                                            gggATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGAt                                                                      >  2:1490681/1‑140 (MQ=255)
                                                                 aaTGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCg                                                                 <  1:1199109/140‑1 (MQ=255)
                                                                  aTGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGa                                                                >  1:242949/1‑140 (MQ=255)
                                                                  aTGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGa                                                                <  2:1297950/140‑1 (MQ=255)
                                                                       aGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGt                                                           <  1:1480603/140‑1 (MQ=255)
                                                                          ttattaCCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTa                                                        <  2:405578/140‑1 (MQ=255)
                                                                            attaCCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATc                                                      >  1:1107996/1‑140 (MQ=255)
                                                                            attaCCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATc                                                      >  2:644294/1‑140 (MQ=255)
                                                                                   tCAAATAATATGAGGTAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTGATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCg                                               >  1:1378566/1‑140 (MQ=255)
                                                                                   tCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCg                                               >  1:454716/1‑140 (MQ=255)
                                                                                    cAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCgg                                              >  2:625353/1‑140 (MQ=255)
                                                                                        taataTGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTa                                          <  2:51784/140‑1 (MQ=255)
                                                                                          atatGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAAt                                        >  1:993559/1‑140 (MQ=255)
                                                                                           tatGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATc                                       >  2:544228/1‑140 (MQ=255)
                                                                                              gagaTAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACg                                    <  1:1445998/140‑1 (MQ=255)
                                                                                              gagaTAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACg                                    <  1:633136/140‑1 (MQ=255)
                                                                                               agaTAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGc                                   >  1:168412/1‑140 (MQ=255)
                                                                                                 aTAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTg                                 >  2:1362623/1‑140 (MQ=255)
                                                                                                 aTAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTg                                 >  2:501437/1‑140 (MQ=255)
                                                                                                   aaaTAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGAt                               >  2:1400373/1‑140 (MQ=255)
                                                                                                     aTAGTGCTGCAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATtg                             >  2:1345669/1‑140 (MQ=255)
                                                                                                         tgctgcAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGAt                         >  1:877103/1‑140 (MQ=255)
                                                                                                         tgctgcAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGAt                         >  1:408881/1‑140 (MQ=255)
                                                                                                         tgctgcAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGAt                         >  2:924370/1‑140 (MQ=255)
                                                                                                         tgctgcAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGAt                         >  2:92949/1‑140 (MQ=255)
                                                                                                          gctgcAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATc                        >  1:975166/1‑140 (MQ=255)
                                                                                                           ctgcAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCg                       >  1:928979/1‑140 (MQ=255)
                                                                                                              cAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAAc                    <  1:850176/140‑1 (MQ=255)
                                                                                                              cAACATTGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAAc                    >  2:951698/1‑140 (MQ=255)
                                                                                                                   ttGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAACTGGTc               >  2:634312/1‑140 (MQ=255)
                                                                                                                    tGCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAACTGGTcc              <  2:618141/140‑1 (MQ=255)
                                                                                                                    tGCATTTTGGCCCCGATTCATCCATTATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAACTGGTcc              <  2:1285071/140‑1 (MQ=255)
                                                                                                                     gCATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAACTGGTCCt             <  1:543810/140‑1 (MQ=255)
                                                                                                                      cATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAACTGGTCCTc            >  2:1321610/1‑140 (MQ=255)
                                                                                                                      cATTTTTGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAACTGGTCCTc            >  1:1279427/1‑140 (MQ=255)
                                                                                                                        tttttGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAACTGGTCCTCgg          <  2:1107996/140‑1 (MQ=255)
                                                                                                                        tttttGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAACTGGTCCTCgg          <  2:993559/140‑1 (MQ=255)
                                                                                                                         ttttGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAACTGGTCCTCGGc         <  2:242949/140‑1 (MQ=255)
                                                                                                                         ttttGCCCCGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAACTGGTCCTCGGc         <  2:1415966/140‑1 (MQ=255)
                                                                                                                                ccGATTCATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAACTGGTCCTCGGCATTGATa  >  1:997975/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                     
ATAGTGTCTCCACATGCGATATTTCTTAAATAATGTTTTATTATTACCACTTTTAATTCAGGGATAATGTGAGGTTATTACCCTCAAATAATATGAGATAAATAGTGCTGCAACATTGCATTTTTGCCCCGATTTATCCATGATCGAATTGTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTATGGAATGGATTGCCGATCCGTCTATCTGGGCCGGGTTAATCACGCTGATTGTGATCGAACTGGTCCTCGGCATTGATA  >  NC_000913/2137713‑2137980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A