Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	124	90.1	3003320	99.2%	2979293	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,169,070	A→G	D120G (GAC→GGC)	yegS →	lipid kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,169,070	0	A	G	100.0%	333.3 / NA	89	D120G (GAC→GGC)	yegS	lipid kinase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (33/56); total (33/56)

ACGGCGTTGATTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGACGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCCGCGCTGGGTAGCGTCTCTTACA  >  NC_000913/2168934‑2169204

aCGGCGTTGTTTCAGTGGGAGGGGAATGACATCCCCGCGTGGGAAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGgcgc                                                                                                                                     <  2:897193/140‑1 (MQ=255)

  ggCGTTGTTTCAGTGTGAGGGGGATGACATCCCCGCGCAGGGAATTTTGCCATTGGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCa                                                                                                                                   <  2:774789/140‑1 (MQ=255)

  ggCGTTGATTCAGTGTGAGGGGGATGACATCCCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCa                                                                                                                                   <  1:63874/140‑1 (MQ=255)

  ggCGTTGATTCAGTGTGAGGGGGATGACATCCCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCa                                                                                                                                   <  1:685473/140‑1 (MQ=255)

  ggCGTTGATTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCa                                                                                                                                   <  1:623334/140‑1 (MQ=255)

  ggCGTTGATTCAGTGGGGGGGGGATGACATCCCCGCGCTGGGAATTTTGCCATTGGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCa                                                                                                                                   <  2:1038253/140‑1 (MQ=255)

   gCGTTGATTCGGTGGGGGGGGGATGACATCCCCGCGCGGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCAt                                                                                                                                  <  2:229896/140‑1 (MQ=255)

    tgTTGATTAGGTGGGGGGGGAATGACATCCCGGCGGGGGAAATTTTGCCATGAGAAGCCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGGGCCAtt                                                                                                                                 <  1:469883/139‑1 (MQ=255)

    cGTTGTTTGAGTGAGGGGGGGGCGACATGGCCGCGGGGGTTTTTTGGCCATTAGGATCCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTTAGGCACTGGATAAGGCGCTGTAACTGGGAATTGCCGGTGGCGCCAtt                                                                                                                                 <  2:1042547/140‑1 (MQ=255)

    cGTTGATTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCAtt                                                                                                                                 >  2:58407/1‑140 (MQ=255)

      ttGTTTCAGTGGGGGGGGGATGACATCCCCGCGCTGGAAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGc                                                                                                                               <  2:927646/140‑1 (MQ=255)

      ttGATTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGc                                                                                                                               >  1:956170/1‑140 (MQ=255)

       tGATTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCg                                                                                                                              >  1:806128/1‑140 (MQ=255)

        gATTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCga                                                                                                                             >  1:988876/1‑140 (MQ=255)

         tttCGGTGTGAGGGGGATGACATCCCCGCGTGGGGAATTTTGCCTTTAGTACCCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCgac                                                                                                                            <  1:746808/139‑2 (MQ=255)

         aTTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCgat                                                                                                                            <  1:523390/140‑1 (MQ=255)

         aTTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCgat                                                                                                                            >  2:988315/1‑140 (MQ=255)

         aTTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCACCATTGCgat                                                                                                                            <  1:197579/140‑1 (MQ=255)

           tCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCgatag                                                                                                                          >  2:848972/1‑140 (MQ=255)

              gtgtGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCgatagata                                                                                                                       >  1:418932/1‑140 (MQ=255)

              gtgtGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCgatagata                                                                                                                       <  1:968454/140‑1 (MQ=255)

              gtgtGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACAGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCgatagata                                                                                                                       <  1:1340088/140‑1 (MQ=255)

                 tgAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATgg                                                                                                                    >  1:561481/1‑140 (MQ=255)

                   ggggggATGCCATCCCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGgcg                                                                                                                  <  2:948036/139‑1 (MQ=255)

                   ggggggATGACATCCCCGCGCTGGGAATTTTGCCTTTGGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGCAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGgcg                                                                                                                  <  1:1043237/139‑1 (MQ=255)

                     ggggATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCa                                                                                                                >  2:912889/1‑140 (MQ=255)

                         aTGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTc                                                                                                            >  2:1123571/1‑140 (MQ=255)

                         aTGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATAGCGATAGATATGGCGCAGGTc                                                                                                            >  2:742403/1‑140 (MQ=255)

                             cATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTcaaca                                                                                                        >  2:1060839/1‑140 (MQ=255)

                             cATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTcaaca                                                                                                        >  2:1063102/1‑140 (MQ=255)

                                  ccGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAacaaacaa                                                                                                   >  1:61716/1‑140 (MQ=255)

                                   cgcgCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAAcaaacaaa                                                                                                  <  1:567209/140‑1 (MQ=255)

                                    gcgcTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACaaacaaac                                                                                                 <  2:1302944/140‑1 (MQ=255)

                                    gcgcTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACaaacaaac                                                                                                 <  2:213750/140‑1 (MQ=255)

                                     ggttGGGAATTTTGCCATGAGCAGCCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAAcc                                                                                                <  1:233541/137‑1 (MQ=255)

                                     cgcTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAAcc                                                                                                <  2:956170/140‑1 (MQ=255)

                                      gcTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCt                                                                                               >  1:682459/1‑140 (MQ=255)

                                      gcTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCt                                                                                               >  2:905091/1‑140 (MQ=255)

                                       cTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTg                                                                                              <  1:566195/140‑1 (MQ=255)

                                        tGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGt                                                                                             <  1:485719/140‑1 (MQ=255)

                                        tGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGt                                                                                             <  1:578308/140‑1 (MQ=255)

                                        ggggAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGt                                                                                             <  2:157172/139‑1 (MQ=255)

                                          ggAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGttt                                                                                           >  2:688676/1‑140 (MQ=255)

                                           gAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGtttt                                                                                          >  1:940882/1‑140 (MQ=255)

                                                 tGCCTTGAGGAGCCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAat                                                                                    <  2:973840/140‑1 (MQ=255)

                                                   ccATTAGCACCCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAatat                                                                                  <  1:1123571/140‑1 (MQ=255)

                                                            aCCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAgg                                                                         <  1:1181960/140‑1 (MQ=255)

                                                            aCCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAgg                                                                         <  2:866560/140‑1 (MQ=255)

                                                              cGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCg                                                                       >  1:664958/1‑140 (MQ=255)

                                                                ccAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGa                                                                     >  2:1216465/1‑140 (MQ=255)

                                                                      aTTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTggg                                                               <  1:417116/140‑1 (MQ=255)

                                                                      aTTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTggg                                                               <  2:453680/140‑1 (MQ=255)

                                                                       ttttGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGa                                                              <  1:912889/140‑1 (MQ=255)

                                                                         ttGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGAcg                                                            <  2:940882/140‑1 (MQ=255)

                                                                          tGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGAcgc                                                           >  1:1390419/1‑140 (MQ=255)

                                                                          tGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGAcgc                                                           >  1:1169916/1‑140 (MQ=255)

                                                                           gCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGAcgcg                                                          <  2:182304/140‑1 (MQ=255)

                                                                              gccaGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTAt                                                       <  1:166029/139‑1 (MQ=255)

                                                                              cccaGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTAt                                                       <  1:982493/139‑1 (MQ=255)

                                                                              accaGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTAt                                                       <  1:898540/140‑1 (MQ=255)

                                                                              accaGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTAt                                                       <  1:519962/140‑1 (MQ=255)

                                                                                caGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTa                                                     >  2:826731/1‑140 (MQ=255)

                                                                                          aTTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAAc                                           >  1:703944/1‑140 (MQ=255)

                                                                                           ttCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGGGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACg                                          >  2:1102116/1‑140 (MQ=255)

                                                                                           ttCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACg                                          >  2:901503/1‑140 (MQ=255)

                                                                                             ccTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGcc                                        >  2:257088/1‑140 (MQ=255)

                                                                                             ccTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGcc                                        >  1:890652/1‑140 (MQ=255)

                                                                                               tGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCgg                                      >  2:135925/1‑140 (MQ=255)

                                                                                                       tGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTa                              >  1:1279373/1‑140 (MQ=255)

                                                                                                       tGGATAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTa                              >  2:814165/1‑140 (MQ=255)

                                                                                                           tAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGTGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGTGTATTACCACAGAAACGCCGGAAAAATTAAAAg                          <  1:1473172/140‑1 (MQ=255)

                                                                                                           tAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAATCCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAg                          <  1:249436/140‑1 (MQ=255)

                                                                                                           tAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAg                          <  2:61716/140‑1 (MQ=255)

                                                                                                           tAAGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAg                          <  1:122554/140‑1 (MQ=255)

                                                                                                            aaGGCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGc                         >  1:555403/1‑140 (MQ=255)

                                                                                                              ggCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCcg                       <  1:1056179/140‑1 (MQ=255)

                                                                                                              ggCGCTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCcg                       >  1:716918/1‑140 (MQ=255)

                                                                                                                cgcgGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAGCCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCcgcg                     <  2:925847/140‑1 (MQ=255)

                                                                                                                cgcTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCcgcg                     <  2:561481/140‑1 (MQ=255)

                                                                                                                cgcTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCcgcg                     <  1:1216465/140‑1 (MQ=255)

                                                                                                                cgcTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCcgcg                     <  2:1390419/140‑1 (MQ=255)

                                                                                                                 gcTGAAACTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCCgcgc                    >  2:796729/1‑140 (MQ=255)

                                                                                                                     aaaCTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCCGCGCTggg                <  2:254715/140‑1 (MQ=255)

                                                                                                                       aCTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCCGCGCTGGGTa              <  1:848972/140‑1 (MQ=255)

                                                                                                                        cTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCCGCGCTGGGTAg             <  1:652962/140‑1 (MQ=255)

                                                                                                                        cTGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCCGCGCTGGGTAg             <  2:703944/140‑1 (MQ=255)

                                                                                                                         tGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCCGCGCTGGGTAGc            <  1:742403/140‑1 (MQ=255)

                                                                                                                         tGGCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCCGCGCTGGGTAGc            <  1:1072187/140‑1 (MQ=255)

                                                                                                                           gCAATTGCCGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCCGCGCTGGGTAGCGt          <  2:682459/140‑1 (MQ=255)

                                                                                                                              aTTGCCGGTGGTGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCCGCGCTGGGTAGCGtctc       <  2:1266786/140‑1 (MQ=255)

                                                                                                                                   cGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCCGCGCTGGGTAGCGTCTCTTAca  <  2:806128/140‑1 (MQ=255)

                                                                                                                                   cGGTGGCGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCCGCGCTGGGTAGCGTCTCTTAca  <  2:943190/140‑1 (MQ=255)

ACGGCGTTGATTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGTAGGGATTCCTGAGGCACTGGATAAGGCGCTGAAACTGGCAATTGCCGGTGACGCCATTGCGATAGATATGGCGCAGGTCAACAAACAAACCTGTTTTATTAATATGGCGACAGGCGGATTTGGGACGCGTATTACCACAGAAACGCCGGAAAAATTAAAAGCCGCGCTGGGTAGCGTCTCTTACA  >  NC_000913/2168934‑2169204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A