Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 124 90.1 3003320 99.2% 2979293 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,273,700 T→C V446A (GTA→GCA)  yejA → putative oligopeptide ABC transporter periplasmic binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,273,7000TC98.5% 253.4 / ‑4.5 68V446A (GTA→GCA) yejAputative oligopeptide ABC transporter periplasmic binding protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (35/32);  total (35/33)
Fisher's exact test for biased strand distribution p-value = 4.85e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01

TGACAACCTGTTAAAAGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGTATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACATGATGCCGCGCGTATGGCGGGCGATGCCGTG  >  NC_000913/2273563‑2273835
                                                                                                                                         |                                                                                                                                       
tGACAACCTGTTAAAAGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCAt                                                                                                                                       >  2:946874/1‑140 (MQ=255)
tGACAACCTGTTAAAAGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCAt                                                                                                                                       >  1:120983/1‑140 (MQ=255)
tGACAACCTGTTAAAAGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCAt                                                                                                                                       >  2:894809/1‑140 (MQ=255)
tGACAACCTGTTAAAAGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCAt                                                                                                                                       >  2:1006556/1‑140 (MQ=255)
tGACAACCTGTTAAAAGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCAt                                                                                                                                       >  2:301082/1‑140 (MQ=255)
tGACAACCTGTTAAAAGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCAt                                                                                                                                       >  2:349937/1‑140 (MQ=255)
tGACAACCTGTTAAAAGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCAt                                                                                                                                       >  2:662222/1‑140 (MQ=255)
   cAACCTGTTAAAAGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGc                                                                                                                                    <  2:667016/140‑1 (MQ=255)
   cAACCTGTTAAAAGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGc                                                                                                                                    <  1:616534/140‑1 (MQ=255)
   cAACCTGTTAAAAGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGc                                                                                                                                    <  2:434841/140‑1 (MQ=255)
           tAAAAGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAg                                                                                                                            >  2:1047455/1‑140 (MQ=255)
             aaaGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGca                                                                                                                          <  1:513512/140‑1 (MQ=255)
                gCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAg                                                                                                                       >  1:1346341/1‑140 (MQ=255)
                 ccGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGc                                                                                                                      >  2:184338/1‑140 (MQ=255)
                     cAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGc                                                                                                                  <  1:1413273/140‑1 (MQ=255)
                       aaCTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCaa                                                                                                                <  1:301082/140‑1 (MQ=255)
                          ttCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACgg                                                                                                             <  2:1464624/140‑1 (MQ=255)
                          ttCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACgg                                                                                                             <  2:638189/140‑1 (MQ=255)
                          ttCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACgg                                                                                                             <  2:1018426/140‑1 (MQ=255)
                           tctcAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGc                                                                                                            <  2:459753/140‑1 (MQ=255)
                           tctcAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGc                                                                                                            <  1:933773/140‑1 (MQ=255)
                            ctcAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCt                                                                                                           <  1:894809/140‑1 (MQ=255)
                               aaCGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTggg                                                                                                        >  1:1468938/1‑140 (MQ=255)
                                aCGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGt                                                                                                       <  2:161222/140‑1 (MQ=255)
                                aCGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGt                                                                                                       <  2:408027/140‑1 (MQ=255)
                                aCGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGt                                                                                                       <  1:1068645/140‑1 (MQ=255)
                                  gAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTAt                                                                                                     <  1:184338/140‑1 (MQ=255)
                                    aGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCa                                                                                                   >  1:831233/1‑140 (MQ=255)
                                    aGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCa                                                                                                   >  2:190925/1‑140 (MQ=255)
                                      cGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAAc                                                                                                 >  2:206791/1‑140 (MQ=255)
                                         gCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATg                                                                                              >  2:1017483/1‑140 (MQ=255)
                                             ggTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACa                                                                                          >  1:256236/1‑140 (MQ=255)
                                                gCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTc                                                                                       <  2:1382322/140‑1 (MQ=255)
                                                       ggTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGt                                                                                >  2:421060/1‑140 (MQ=255)
                                                                cgcgTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTc                                                                       >  2:876895/1‑140 (MQ=255)
                                                                cgcgTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTc                                                                       >  1:1035752/1‑140 (MQ=255)
                                                                 gcgTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCg                                                                      >  2:1116231/1‑140 (MQ=255)
                                                                  cgTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGc                                                                     >  1:47924/1‑140 (MQ=255)
                                                                  cgTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGc                                                                     <  2:1490077/140‑1 (MQ=255)
                                                                    ttAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCaa                                                                   <  1:301935/140‑1 (MQ=255)
                                                                           cacaACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTa                                                            <  2:256236/140‑1 (MQ=255)
                                                                                 gggTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCa                                                      <  2:1346341/140‑1 (MQ=255)
                                                                                     cAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATgcg                                                  >  2:1105730/1‑140 (MQ=255)
                                                                                     cAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATgcg                                                  <  2:831233/140‑1 (MQ=255)
                                                                                     cAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATgcg                                                  <  2:464861/140‑1 (MQ=255)
                                                                                      aGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGTATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATgcgc                                                 <  2:672929/140‑1 (MQ=255)
                                                                                           cTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTcg                                            <  2:120983/140‑1 (MQ=255)
                                                                                            tCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTcgg                                           >  1:769955/1‑139 (MQ=255)
                                                                                            tCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTcgc                                           >  2:851304/1‑140 (MQ=255)
                                                                                             cAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCTGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTcgcg                                          >  2:904979/1‑140 (MQ=255)
                                                                                             cAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTcgcg                                          >  1:665562/1‑140 (MQ=255)
                                                                                               gCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGAc                                        <  2:1035752/140‑1 (MQ=255)
                                                                                               gCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCACGAc                                        <  1:662222/140‑1 (MQ=255)
                                                                                                     aaTTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGAc                                  >  1:1224134/1‑140 (MQ=255)
                                                                                                     aaTTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGAc                                  >  1:1015051/1‑140 (MQ=255)
                                                                                                     aaTTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGAc                                  <  1:349937/140‑1 (MQ=255)
                                                                                                          ttGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACatgat                             >  1:398267/1‑140 (MQ=255)
                                                                                                          ttGCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACatgat                             >  1:898935/1‑140 (MQ=255)
                                                                                                            gCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACATGATGc                           <  1:137945/140‑1 (MQ=255)
                                                                                                            gCTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACATGATGc                           <  2:23398/140‑1 (MQ=255)
                                                                                                             cTTCCCGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACATGATGcc                          <  1:359518/140‑1 (MQ=255)
                                                                                                                cccGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACATGATGCcgcg                       <  2:47924/140‑1 (MQ=255)
                                                                                                                cccGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACATGATGCcgcg                       >  1:1334987/1‑140 (MQ=255)
                                                                                                                  cGCAAGCAGCAATAGTCAGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACATGATGCcgcgcg                     >  1:516603/1‑140 (MQ=255)
                                                                                                                                   aGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACATGATGCCGCGCGTATGGCGGGCGATGCCg    >  2:593778/1‑140 (MQ=255)
                                                                                                                                   aGTGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACATGATGCCGCGCGTATGGCGGGCGATGCCg    <  2:769955/140‑1 (MQ=255)
                                                                                                                                     tGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACATGATGCCGCGCGTATGGCGGGCGATGCCggg  >  2:1215905/1‑138 (MQ=255)
                                                                                                                                     tGGGCATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACATGATGCCGCGCGTATGGCGGGCGATGCCGTg  >  2:708174/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
TGACAACCTGTTAAAAGCCGACAAACTTCTCAACGAAGCGGGCTGGGTGCTGAAGGGTCAGCAACGCGTTAATGCCACAACGGGTCAGCCACTCAGCTTTGAATTATTGCTTCCCGCAAGCAGCAATAGTCAGTGGGTATTGCCGTTCCAGCACAGCCTGCAACGGCTGGGTATCAACATGGACATTCGCAAGGTGGATAACTCGCAAATCACTAACCGCATGCGCAGTCGCGACTATGACATGATGCCGCGCGTATGGCGGGCGATGCCGTG  >  NC_000913/2273563‑2273835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A