Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	124	90.1	3003320	99.2%	2979293	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,278,610	A→G	I384T (ATT→ACT)	bcr ←	multidrug efflux pump Bcr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,278,610	0	A	G	100.0%	250.8 / NA	67	I384T (ATT→ACT)	bcr	multidrug efflux pump Bcr
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (36/31); total (36/31)

AATAAACATATATCGGGGGAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAATGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAGGTTCCTGCCAGCGAAGATGCCGTTCCCG  >  NC_000913/2278484‑2278745

aataaaCATATATCGGGGGAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTgc                                                                                                                            >  2:191045/1‑140 (MQ=255)

 ataaaCATATATCGGGGGAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTgcg                                                                                                                           <  2:1499287/140‑1 (MQ=255)

          tatCGGGGGAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCa                                                                                                                  >  1:959312/1‑140 (MQ=255)

          tatCGGGGGAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCa                                                                                                                  >  2:14018/1‑140 (MQ=255)

          tatCGGGGGAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCa                                                                                                                  >  1:879127/1‑140 (MQ=255)

           atCGGGGGAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCaa                                                                                                                 <  2:56/140‑1 (MQ=255)

            tCGGGGGAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAAt                                                                                                                <  1:992669/140‑1 (MQ=255)

            tCGGGGGAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAAt                                                                                                                >  1:521098/1‑140 (MQ=255)

              gggggAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTg                                                                                                              >  1:53239/1‑140 (MQ=255)

               ggggAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGa                                                                                                             >  1:379100/1‑140 (MQ=255)

                gggAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGAc                                                                                                            >  2:605481/1‑140 (MQ=255)

                 ggcaTGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGCGCAATAGATCACCGTTTTCTCGGCCGACTGGCGTACAGACAGAAGAGAGCGGAGCTGGTTGCGCAGAATGCAATTGAcc                                                                                                           >  2:576165/4‑140 (MQ=255)

                 ggAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGAcc                                                                                                           >  1:1313671/1‑140 (MQ=255)

                 ggAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGAcc                                                                                                           <  2:1417767/140‑1 (MQ=255)

                 ggAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGAcc                                                                                                           <  1:1032360/140‑1 (MQ=255)

                 ggAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGAcc                                                                                                           <  2:513938/140‑1 (MQ=255)

                     tGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAat                                                                                                       >  1:128621/1‑140 (MQ=255)

                     tGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAat                                                                                                       >  2:871987/1‑140 (MQ=255)

                              tgtgGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCa                                                                                              >  2:49385/1‑140 (MQ=255)

                                tgGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCCTg                                                                                            >  2:1053192/1‑140 (MQ=255)

                                tgGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATg                                                                                            <  1:710481/140‑1 (MQ=255)

                                  gTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCa                                                                                          <  2:210644/140‑1 (MQ=255)

                                  gTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGCGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCa                                                                                          >  2:1383790/1‑140 (MQ=255)

                                          gCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTaaa                                                                                  >  1:937195/1‑140 (MQ=255)

                                               aacaaAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCg                                                                             <  1:191045/140‑1 (MQ=255)

                                                 caaAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTTGCa                                                                           <  1:1372365/140‑1 (MQ=255)

                                                 caaAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCa                                                                           >  2:893111/1‑140 (MQ=255)

                                                    aGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAaga                                                                        >  1:1499609/1‑140 (MQ=255)

                                                    aGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAaga                                                                        <  1:14018/140‑1 (MQ=255)

                                                      gAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAgaga                                                                      >  1:1107164/1‑140 (MQ=255)

                                                        aGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGaaa                                                                    >  2:465614/1‑140 (MQ=255)

                                                        aGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGaaa                                                                    >  1:1005778/1‑140 (MQ=255)

                                                         gCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGaagg                                                                   >  1:1444100/1‑138 (MQ=255)

                                                         gCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAg                                                                   >  1:333064/1‑140 (MQ=255)

                                                          ccTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGc                                                                  >  1:1153156/1‑140 (MQ=255)

                                                           cTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCa                                                                 >  2:158351/1‑140 (MQ=255)

                                                             tttAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAAt                                                               <  2:753936/140‑1 (MQ=255)

                                                                 gCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATgcgc                                                           <  2:848754/140‑1 (MQ=255)

                                                                  cTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGTGcc                                                          <  1:63671/140‑1 (MQ=255)

                                                                  cTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGcc                                                          <  1:325334/140‑1 (MQ=255)

                                                                  cTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGcc                                                          <  2:694615/140‑1 (MQ=255)

                                                                   ttCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCca                                                         <  2:959312/140‑1 (MQ=255)

                                                                     ccTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCcaac                                                       >  2:694114/1‑140 (MQ=255)

                                                                         gTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAAtt                                                   <  1:893111/140‑1 (MQ=255)

                                                                           tgtgCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACGGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGc                                                 >  1:138095/1‑140 (MQ=255)

                                                                           tgtgCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGc                                                 <  2:53239/140‑1 (MQ=255)

                                                                              gCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGcccc                                              <  1:1383790/140‑1 (MQ=255)

                                                                                 aTAGATCACCGCTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTAt                                           <  1:840055/140‑1 (MQ=255)

                                                                                    gATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGcc                                        <  1:465614/140‑1 (MQ=255)

                                                                                     aTCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCa                                       >  1:106671/1‑140 (MQ=255)

                                                                                     aTCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCa                                       >  2:417612/1‑140 (MQ=255)

                                                                                       cACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCaaa                                     >  1:1437240/1‑140 (MQ=255)

                                                                                       cACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCaaa                                     >  1:340639/1‑140 (MQ=255)

                                                                                          cGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACg                                  >  1:1366158/1‑140 (MQ=255)

                                                                                            ttttttCGGCCGCCTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGa                                <  1:871987/140‑1 (MQ=255)

                                                                                            ttttttCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGa                                <  2:175256/140‑1 (MQ=255)

                                                                                            ttttttCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGa                                <  1:129300/140‑1 (MQ=255)

                                                                                            ttttttCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGa                                <  2:379100/140‑1 (MQ=255)

                                                                                              ttttCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAg                              >  1:468881/1‑140 (MQ=255)

                                                                                               tttCGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAGGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAgg                             <  2:1444100/140‑1 (MQ=255)

                                                                                                  cGGCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAGGTTc                          <  2:340639/140‑1 (MQ=255)

                                                                                                   ggCCGACTGGCGTACAGACAGAAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAGGTTcc                         <  2:1005778/140‑1 (MQ=255)

                                                                                                                 cagacagaAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAGGTTCCTGCCAGCGAAGATg           <  1:605481/140‑1 (MQ=255)

                                                                                                                 cagacagaAGAGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAGGTTCCTGCCAGCGAAGATg           <  2:521098/140‑1 (MQ=255)

                                                                                                                      agaagaGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAGGTTCCTGCCAGCGAAGATGCCGtt      >  1:242400/1‑140 (MQ=255)

                                                                                                                      agaagaGAGTGGAGCTGGTTGCGCAGAATGCAATAGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAGGCTCCTGCCAGCGAAGATGCCGtt      >  2:1469244/1‑140 (MQ=255)

                                                                                                                       gaagaGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAGGTTCCTGCCAGCGAAGATGCCGTTc     >  1:1427683/1‑140 (MQ=255)

                                                                                                                        aagaGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAATACGGAAGGTTCCTGCCAGCGAAGATGCCGTTcc    >  1:418920/1‑140 (MQ=255)

                                                                                                                        aagaGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAGGTTCCTGCCAGCGAAGATGCCGTTcc    >  1:524279/1‑140 (MQ=255)

                                                                                                                        aagaGAGTGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAGGTTCCTGCCAGCGAAGATGCCGTTcc    >  2:1108555/1‑140 (MQ=255)

                                                                                                                         agagagTGGGGCTGGTGGCGAAGAATGCAATTGACCAAATCATCGGCCATGCAGAATTAAAGGCCGCAAGAAAAAAAAATGCGCAAACAATTGCCCCTATGCCAAAAGGGAAGGTTCCTGCCAGCGAAGATGCCGTcccc   <  2:1107164/140‑1 (MQ=255)

                                                                                                                          gagaGTGGAGCTGGTTGCGCAGAATGCAATTGCCCAAATCATCGGCCATGCAGAGTAAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAGGTTCCTGCCAGCGAAGATGCCGTTCCCg  <  1:1112220/140‑1 (MQ=255)

AATAAACATATATCGGGGGAATGATAGATTTGTGGTTGACATGCATCAACAAAGGAAGCCTTTTAGCTTCCTCGTTGTGCAATAGATCACCGTTTTTTCGGCCGACTGGCGTACAGACAGAAGAGAATGGAGCTGGTTGCGCAGAATGCAATTGACCAAATCATCGGCCATGCAGAGTTAAAGGTCGCAAGAGAAAGCAATGCGCCAACAATTGCCCCTATGCCAAAACGGAAGGTTCCTGCCAGCGAAGATGCCGTTCCCG  >  NC_000913/2278484‑2278745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A