Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F28 I1 R1	116	98.7	3298914	99.2%	3272522	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,286,652	T→C	pseudogene (2263/2525 nt)	yejO ←	adhesin‑like autotransporter YejO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,286,652	0	T	C	100.0%	210.9 / NA	59	pseudogene (2263/2525 nt)	yejO	adhesin‑like autotransporter YejO
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (42/17); total (42/17)

AACGCCACTGGTTCCAGCCACATCATTATTAAATTTGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGTGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAGATAGGGTCTAACAC  >  NC_000913/2286516‑2286784

aaCGCCACTGGTTCCAGCCACATCATTATTAAATTTGCCATCGTCATTAGCTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGAt                                                                                                                                   <  2:235316/140‑1 (MQ=255)

   gCCACTGGTTCCAGCCACATCATTATTAAATTTGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGc                                                                                                                                >  2:1529439/1‑140 (MQ=255)

   gCCACTGGTTCCAGCCACATCATTATTAAATTTGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGc                                                                                                                                >  1:282832/1‑140 (MQ=255)

       cTGGTTCCAGCCACATCATTATTAAATTTGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTAc                                                                                                                            >  2:1478779/1‑140 (MQ=255)

        tGGTTCCAGCCACATCATTATTAAATTTGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTAcc                                                                                                                           >  1:1195938/1‑140 (MQ=255)

             ccAGCCACATCATTATTAAATTTGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGt                                                                                                                      >  2:714247/1‑140 (MQ=255)

                    catcatTATTAAATTTGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCt                                                                                                               >  1:376418/1‑140 (MQ=255)

                    catcatTATTAAATTTGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGCATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGGTCCCGCt                                                                                                               >  1:720344/1‑140 (MQ=255)

                     atcatTATTAAATTTGCCATCGTCTTTACCTTTCCCCTGGTGAGAATCGGCGTATCCCTGCCGCCCGGCCGCTTTCAGCCGGGGTTCCAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCtt                                                                                                              <  2:633679/140‑1 (MQ=255)

                     atcatTATTAAATTTGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCtt                                                                                                              >  2:594871/1‑140 (MQ=255)

                     atcatTATTAAATTTGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCtt                                                                                                              >  2:823312/1‑140 (MQ=255)

                       catTATTAATTTTGCCATCGTCATTACCTTTCCCCTGGTTAGAATCGGCGTTTTCCTGACGCACGGCCGCTTTCAGCCGGGGTTCCAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCa                                                                                                            <  2:1612486/140‑1 (MQ=255)

                        tttattaATTTTGCCATCTTCATTACCTTTCCCCTGTTTAGAATCGGCGTTTCCCGGCCGCCCGGCCGTTTTCAGCCAGGTTTCCAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAg                                                                                                           <  2:1613235/139‑1 (MQ=255)

                         ttattaAATTTGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAgc                                                                                                          >  1:963404/1‑140 (MQ=255)

                          tattaAATTTGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAgcg                                                                                                         >  2:568388/1‑140 (MQ=255)

                                 tttGCCATCGTCATTAACTTTCACCTGGTCAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAata                                                                                                  >  1:1623609/1‑140 (MQ=255)

                                   tGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATc                                                                                                <  2:1005693/140‑1 (MQ=255)

                                    gCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATcc                                                                                               >  1:603023/1‑140 (MQ=255)

                                    gCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATcc                                                                                               >  1:1496273/1‑140 (MQ=255)

                                    gCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGATCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATcc                                                                                               >  2:888679/1‑140 (MQ=255)

                                      cATCGTCATTACCTTTCCCCTGGTTAGAATCGGCGTATTCCTGCCGCACGGCCGCTTTCAGCCGGGGTTCCAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCgg                                                                                             <  2:14974/140‑1 (MQ=255)

                                      cATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTCTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCgg                                                                                             >  1:1289410/1‑140 (MQ=255)

                                       aTCGTCTTTAACTTTCCCCGGGTTAGAGTCGCCTTTTTCCTGCCGCACGGCCCTTTTCAGCCGGGTTTCCGGCGTCGTCCCGTTTTGCTGCTCAATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCggg                                                                                            <  2:401665/140‑1 (MQ=255)

                                         cGTCATTACCTTTCACCTGGTTAGATTCGCCGTATCCCTGCCGCCCGGCCGTTTTCAGCCAGGGTCCCAGCGTCGTACCGTTTTGCAGGCCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTa                                                                                          <  2:812274/140‑1 (MQ=255)

                                         cGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTa                                                                                          <  1:1478779/140‑1 (MQ=255)

                                         cGTAATTAACTTTCACCTGGTTAAAATCGGCGTTTTCCTGACGCCCGGCCGCTTTCACCCGGGGTGCCAGCGTGGTGCCGTTTTGCAGGTCCATGCAATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTa                                                                                          <  2:1511400/140‑1 (MQ=255)

                                           tCATTACCTTTCCCCTGGTTAGACGCGGCGTATTCCTGCCGCAGGCCCGTTTTCAGCCGGGTTCCCAGCGTCGTCCCGTTTGGCGGGCCCAGGCGATCGGTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTAtt                                                                                        <  2:1352840/140‑1 (MQ=255)

                                                accTTTCCCCTGGTTAGAATCGGCGTTTTCCTGACGCCCGGCCGTTTTCAGCCGGGGTTCCAGCGTCGTACCGTTTTGCGGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCca                                                                                   <  2:376418/138‑1 (MQ=255)

                                                     tCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATcc                                                                              >  1:927522/1‑140 (MQ=255)

                                                     tCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATcc                                                                              >  2:446587/1‑140 (MQ=255)

                                                      cACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCcg                                                                             >  1:471670/1‑140 (MQ=255)

                                                            gtaaGAATGGGCTTTTCCCTGACGCGCGCCCGTTTCCAGCCGGGTTCCCAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCa                                                                       <  2:1623609/137‑1 (MQ=255)

                                                            gTTAGACTCGGCGTATTCCTGACGCCCGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCa                                                                       <  2:834157/140‑1 (MQ=255)

                                                            gTTAGAATCGGCGTTTTCGTGCCCCCCGGCCGCTTCCAGCCGGGGTTCCAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCa                                                                       <  2:43768/140‑1 (MQ=255)

                                                            gTTAGAATCGGCGTTTTCCTGACGCCCGCCCGCTTTCAGCCGGGGTCCCAGCGTCGTCCCTTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCa                                                                       <  2:107785/140‑1 (MQ=255)

                                                            gTTAGAATCGGCGTTTCCCTGCCGCCCGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCa                                                                       <  2:750440/140‑1 (MQ=255)

                                                            gTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCa                                                                       >  1:1409057/1‑140 (MQ=255)

                                                              tAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATg                                                                     <  2:1176747/140‑1 (MQ=255)

                                                                gAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGcc                                                                   <  1:315891/140‑1 (MQ=255)

                                                                  aTCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGt                                                                 >  1:1016992/1‑140 (MQ=255)

                                                                   tCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGtt                                                                >  2:1474072/1‑140 (MQ=255)

                                                                      gCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGa                                                             >  2:1563838/1‑140 (MQ=255)

                                                                        gttttCCTGCCGCCCGGCCGCTTTCGGCCGGGGTCCCAGCGTCGTCCCGTTTTGCGGGTCCATGCGATAGTTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATa                                                           <  2:725000/137‑1 (MQ=255)

                                                                        gTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATa                                                           <  1:1265998/140‑1 (MQ=255)

                                                                             ccTGACGCACGGCCGTTTTCAGCCAGGGTTCCGGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACgtg                                                      <  2:149020/140‑1 (MQ=255)

                                                                             ccTGACGCACGCCCGCTTTCAGCCGGGGTCCCAGCGTCGTCCCTTTTTGCAGGCCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACgtg                                                      <  2:930529/140‑1 (MQ=255)

                                                                                gccGCACGGCCGCTTCCGGCCGGGGTTCCGGCGTCGTCCCGTTTGGCAGGCCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAg                                                   <  2:1289410/138‑1 (MQ=255)

                                                                                gACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAg                                                   >  2:952907/1‑140 (MQ=255)

                                                                                   gCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTcc                                                >  1:1275120/1‑140 (MQ=255)

                                                                                     aCGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTg                                              >  2:1412345/1‑140 (MQ=255)

                                                                                     aCGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTg                                              >  1:1413966/1‑140 (MQ=255)

                                                                                      cgcccGCTTTCAGCCAGGGTCCCAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGa                                             <  2:963404/137‑1 (MQ=255)

                                                                                      cGGCCGCTTTCGGCCGGGTTCCCAGCGTCGTCCCTTTTTGCAGTCCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGa                                             <  2:282832/140‑1 (MQ=255)

                                                                                      cGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTCCCGTTTTGCGGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGa                                             <  2:894600/140‑1 (MQ=255)

                                                                                       ggCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCGGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGAc                                            <  2:817579/140‑1 (MQ=255)

                                                                                        gCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGAcc                                           <  1:1286009/140‑1 (MQ=255)

                                                                                             tttCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGAGCATCtg                                      >  2:1188201/1‑140 (MQ=255)

                                                                                                 ggCCGGGGTTCCAGCGTCGTCCCGTTTTGCAGGCCCATGCGATAGCTTCCCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGt                                  <  2:137549/139‑1 (MQ=255)

                                                                                                  gCCAGGTTTCCAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTa                                 <  1:1387006/140‑1 (MQ=255)

                                                                                                       ggTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGcc                            >  2:1542867/1‑140 (MQ=255)

                                                                                                       ggTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGcc                            >  1:656756/1‑140 (MQ=255)

                                                                                                       ggTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGcc                            >  2:867520/1‑140 (MQ=255)

                                                                                                       ggTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGcc                            >  2:391735/1‑140 (MQ=255)

                                                                                                       ggTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGcc                            >  1:1074725/1‑140 (MQ=255)

                                                                                                       ggTTCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGcc                            >  2:625674/1‑140 (MQ=255)

                                                                                                          tCCAGCGTCGTACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGt                         <  1:568388/140‑1 (MQ=255)

                                                                                                          cccAGCGTCGTCCCTTTTGGCAGGTCCAGGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGt                         <  2:1335919/139‑1 (MQ=255)

                                                                                                           ccAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTa                        <  2:11426/140‑1 (MQ=255)

                                                                                                           ccAGCGTCGTCCCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTa                        <  1:151247/140‑1 (MQ=255)

                                                                                                                 tcgtACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGcc                  >  2:1070201/1‑140 (MQ=255)

                                                                                                                   gtACCGTTTTGCTGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGCATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAg                >  2:936904/1‑140 (MQ=255)

                                                                                                                    tACCGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAGa               <  1:1542867/140‑1 (MQ=255)

                                                                                                                    ccccGTTTGGCGGGCCCAGGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAGa               <  2:278868/138‑1 (MQ=255)

                                                                                                                      ccGTTTTGCGGGCCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAGATa             <  1:1640982/140‑1 (MQ=255)

                                                                                                                      ccGTTTTGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAGATa             <  1:438693/140‑1 (MQ=255)

                                                                                                                           ttGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAGATAGGGTc        <  2:1016992/140‑1 (MQ=255)

                                                                                                                            tGCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAGATAGGGTCt       >  1:104033/1‑140 (MQ=255)

                                                                                                                             gCAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAGATAGGGTCTa      >  1:427294/1‑140 (MQ=255)

                                                                                                                              cAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAGATAGGGTCTaa     >  2:1040138/1‑140 (MQ=255)

                                                                                                                              cAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAGATAGGGTCTaa     >  1:809903/1‑140 (MQ=255)

                                                                                                                              cAGGTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAGATAGGGTCTaa     >  1:1250812/1‑140 (MQ=255)

                                                                                                                                 gTCCATGCGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGCAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAGATAGGGTCTAacac  >  1:1023040/1‑140 (MQ=255)

AACGCCACTGGTTCCAGCCACATCATTATTAAATTTGCCATCGTCATTAACTTTCACCTGGTTAGAATCGGCGTATTCCTGACGCACGGCCGCTTTCAGCCAGGGTTCCAGCGTCGTACCGTTTTGCAGGTCCATGTGATAGCTTACCGCCGTTCCCGCTTCAGCGCGTAATATCCGGGTATTTCCCACATCCGCGCGCATGCCGTTTGATAACGTGTAGTCCTGACCATCTGTGGTAAAGCCGGTAAAGGCCAGATAGGGTCTAACAC  >  NC_000913/2286516‑2286784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A