Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 124 90.1 3003320 99.2% 2979293 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,430,582 C→T R61Q (CGA→CAA)  cvpA ← colicin V production protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,430,5820CT100.0% 276.4 / NA 78R61Q (CGA→CAA) cvpAcolicin V production protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (44/34);  total (44/34)

ACGCACCGAAACAGACGCCCAGCACCCGATCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTCGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACAAAGCCGCGGATCAGGCTAAC  >  NC_000913/2430445‑2430712
                                                                                                                                         |                                                                                                                                  
aCGCACCGAAACAGACGCCCAGCACCCGATCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGa                                                                                                                                  >  2:659448/1‑140 (MQ=255)
  gCACCGAAACAGACGCCCAGCACCCGATCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAAc                                                                                                                                <  1:1144832/140‑1 (MQ=255)
     ccGAAACAGACGCCCAGCACCCGATCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAg                                                                                                                             <  1:748096/140‑1 (MQ=255)
           cAGACGCCCAGCACCCGATCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTc                                                                                                                       >  1:1031490/1‑140 (MQ=255)
              aCGCCCAGCACCCGATCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTc                                                                                                                    >  1:1036113/1‑140 (MQ=255)
                 cccAGCACCCGATCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCaaa                                                                                                                 <  2:1400060/140‑1 (MQ=255)
                      cACCCGATCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCg                                                                                                            >  2:1178941/1‑140 (MQ=255)
                      cACCCGATCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCg                                                                                                            >  1:1151931/1‑140 (MQ=255)
                        cccGATCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTa                                                                                                          >  1:8304/1‑140 (MQ=255)
                          cGATCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTaaa                                                                                                        <  1:1243500/140‑1 (MQ=255)
                          cGATCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTaaa                                                                                                        <  1:1178941/140‑1 (MQ=255)
                            aTCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAAcc                                                                                                      >  1:587804/1‑140 (MQ=255)
                                gTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGAc                                                                                                  >  2:1375196/1‑140 (MQ=255)
                                 tGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACt                                                                                                 <  1:340698/140‑1 (MQ=255)
                                  gCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTg                                                                                                <  1:299491/140‑1 (MQ=255)
                                   ccTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGa                                                                                               >  2:609638/1‑140 (MQ=255)
                                   ccTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGa                                                                                               <  2:1398111/140‑1 (MQ=255)
                                     tGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACa                                                                                             >  2:1339721/1‑140 (MQ=255)
                                     tGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACa                                                                                             <  2:796638/140‑1 (MQ=255)
                                       aCAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAgg                                                                                           >  2:1183623/1‑140 (MQ=255)
                                       aCAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGCTCGTCTTCAAAGCCCGTAAACCAGACTGACAgg                                                                                           >  2:702277/1‑140 (MQ=255)
                                        cAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGt                                                                                          <  1:361452/140‑1 (MQ=255)
                                        cAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGt                                                                                          <  1:764462/140‑1 (MQ=255)
                                        cAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGt                                                                                          <  1:604545/140‑1 (MQ=255)
                                        cAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGt                                                                                          <  1:902165/140‑1 (MQ=255)
                                        cAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGt                                                                                          <  2:286097/140‑1 (MQ=255)
                                        cAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGt                                                                                          <  1:990037/140‑1 (MQ=255)
                                        cAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGt                                                                                          <  1:365113/140‑1 (MQ=255)
                                        cAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGt                                                                                          <  2:497480/140‑1 (MQ=255)
                                        cAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGt                                                                                          <  1:1315256/140‑1 (MQ=255)
                                          aCCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTaa                                                                                        <  1:783133/140‑1 (MQ=255)
                                           ccccGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAg                                                                                       >  2:419493/1‑140 (MQ=255)
                                           ccccGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAg                                                                                       >  2:466482/1‑140 (MQ=255)
                                           ccccGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAg                                                                                       >  1:1473337/1‑140 (MQ=255)
                                           ccccGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAg                                                                                       >  1:135067/1‑140 (MQ=255)
                                            cccGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAgt                                                                                      <  2:1252198/140‑1 (MQ=255)
                                            cccGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAgt                                                                                      <  2:262730/140‑1 (MQ=255)
                                                     tcCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATg                                                                             >  2:930399/1‑140 (MQ=255)
                                                       caccaACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGAc                                                                           <  2:1151931/140‑1 (MQ=255)
                                                          caACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTgg                                                                        <  2:1008253/140‑1 (MQ=255)
                                                            aCTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGca                                                                      >  2:542848/1‑140 (MQ=255)
                                                             cTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGcaa                                                                     >  2:1176091/1‑140 (MQ=255)
                                                               ggCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGcaaca                                                                   >  2:440191/1‑140 (MQ=255)
                                                                     tCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACaaagaaa                                                             >  1:1007710/1‑140 (MQ=255)
                                                                        cGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGca                                                          >  2:308043/1‑140 (MQ=255)
                                                                        cGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGca                                                          >  2:933006/1‑140 (MQ=255)
                                                                         gAAGTTTACGATAGCACCAACGATCAGGGTTGTGATAAGCATTTCCGCGATGGCAATCCGATTTTGAACCAGTTCGTCTACAATGCCTGTAAACAAGACTGACAGGAAAGTGTAGTAATGACTGGCAACAAAGAAAGctc                                                         <  2:210805/140‑3 (MQ=255)
                                                                         gAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGcac                                                         <  1:1121660/140‑1 (MQ=255)
                                                                          aaGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGcaca                                                        >  1:264720/1‑140 (MQ=255)
                                                                               cACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAAcccc                                                   >  1:315955/1‑140 (MQ=255)
                                                                               cACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGAAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAAcccc                                                   >  1:581881/1‑140 (MQ=255)
                                                                                     aGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCa                                             >  1:1196828/1‑140 (MQ=255)
                                                                                     aGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCa                                             >  1:546422/1‑140 (MQ=255)
                                                                                       cACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCAcc                                           >  2:1467918/1‑140 (MQ=255)
                                                                                       cACCAACGATAAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCAcc                                           >  2:828168/1‑140 (MQ=255)
                                                                                             cGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGAt                                     <  2:1391866/140‑1 (MQ=255)
                                                                                                tCAGGGTAGCGATAAACAGTACCGCGATGGAAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAAc                                  <  2:581881/140‑1 (MQ=255)
                                                                                                       aGCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCAc                           >  2:53571/1‑140 (MQ=255)
                                                                                                        gCGATAAACAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAATCACAACCCCATGTCACCAGCGATAACGCTTCACg                          >  2:1025068/1‑140 (MQ=255)
                                                                                                             aaaCAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACaa                     <  2:716554/140‑1 (MQ=255)
                                                                                                              aaCAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACaaa                    >  2:1132792/1‑140 (MQ=255)
                                                                                                              aaCAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACaaa                    >  1:1448568/1‑140 (MQ=255)
                                                                                                              aaCAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACaaa                    >  2:647586/1‑140 (MQ=255)
                                                                                                              aaCAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACaaa                    >  1:462089/1‑140 (MQ=255)
                                                                                                              aaCAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACaaa                    >  1:465867/1‑140 (MQ=255)
                                                                                                              aaCAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACaaa                    >  2:166688/1‑140 (MQ=255)
                                                                                                              aaCAGTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCACATGTCACCAGCGATAACGCTTCACGAACaaa                    >  2:867314/1‑140 (MQ=255)
                                                                                                                  gTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCCCCAGCGATAACGCTTCACGAACAAAGCcg                <  1:308043/140‑1 (MQ=255)
                                                                                                                  gTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACAAAGCcg                >  1:91135/1‑140 (MQ=255)
                                                                                                                  gTACCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACAAAGCcg                <  1:930399/140‑1 (MQ=255)
                                                                                                                    aCCGCGATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACAAAGCcgcg              <  1:260308/140‑1 (MQ=255)
                                                                                                                      cgcgATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACAAAGCCGCGGa            >  2:472833/1‑140 (MQ=255)
                                                                                                                        cgATGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACAAAGCCGCGGATc          <  1:1339721/140‑1 (MQ=255)
                                                                                                                           tGGCAATCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACAAAGCCGCGGATCAgg       <  1:1375196/140‑1 (MQ=255)
                                                                                                                               aaTCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACAAAGCCGCGGATCAGGCTaa   >  2:1327500/1‑140 (MQ=255)
                                                                                                                               aaTCCCATTTTGAACCAGTTCGTCTTCAAAACCCGTAAACCAGACTGACAGGTAAGTGGAGTAATGACCGGCAACAAAGAAAGCACAACCCCAAGTCACCAGTGATAACGCTTCACGAACAAAGCCACGGATCCTGCTaa   >  2:577192/1‑140 (MQ=255)
                                                                                                                                aTCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACAAAGCCGCGGATCAGGCTAAc  >  2:512954/1‑140 (MQ=255)
                                                                                                                                aTCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACAAAGCCGCGGATCAGGCTAAc  <  1:659448/140‑1 (MQ=255)
                                                                                                                                aTCCCATTTTGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACAAAGCCGCGGATCAGGCTAAc  <  2:760272/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                  
ACGCACCGAAACAGACGCCCAGCACCCGATCGGTGCCTGACAACCCCGTTTTCTCCACCAACTGGCCTATCACGAAGTTCACGATAGCACCAACGATCAGGGTAGCGATAAACAGTACCGCGATGGCAATCCCATTTCGAACCAGTTCGTCTTCAAAGCCCGTAAACCAGACTGACAGGTAAGTGTAGTAATGACTGGCAACAAAGAAAGCACAACCCCATGTCACCAGCGATAACGCTTCACGAACAAAGCCGCGGATCAGGCTAAC  >  NC_000913/2430445‑2430712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A