Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	124	90.1	3003320	99.2%	2979293	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,921,571	A→G	V177A (GTG→GCG)	gudP ←	galactarate/glucarate/glycerate transporter GudP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,921,571	0	A	G	97.5%	283.1 / ‑2.5	79	V177A (GTG→GCG)	gudP	galactarate/glucarate/glycerate transporter GudP
Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (50/27); total (52/27)
Fisher's exact test for biased strand distribution p-value = 5.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.75e-01

CACCACCCGCGGCGATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCACTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTGCCGGGGAA  >  NC_000913/2921434‑2921707

caccacCCGCGGCGATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCt                                                                                                                                        >  2:295982/1‑140 (MQ=255)

caccacCCGCGGCGATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCt                                                                                                                                        >  2:44791/1‑140 (MQ=255)

   caccCGCGGCGATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCa                                                                                                                                     >  1:458221/1‑140 (MQ=255)

   caccCGCGGCGATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCa                                                                                                                                     >  2:1099280/1‑140 (MQ=255)

   caccCGCGGCGATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCa                                                                                                                                     >  1:540666/1‑140 (MQ=255)

   caccCGCGGCGATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAACCCGCTTCa                                                                                                                                     >  2:923325/1‑140 (MQ=255)

            cgATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTcagc                                                                                                                            <  1:720679/140‑1 (MQ=255)

            cgATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTcagc                                                                                                                            <  2:1348940/140‑1 (MQ=255)

             gATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGATTTTCGACCAGATAAAGCTGATGTCAATCCCCAGACCGCCCAGAAAGAAGAAGACGTGTGGCCAGCCCGCTTCATGCGTcagcc                                                                                                                           <  2:1417468/140‑1 (MQ=255)

             gATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTcagcc                                                                                                                           <  2:458221/140‑1 (MQ=255)

                      cAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATaa                                                                                                                  >  2:1337730/1‑140 (MQ=255)

                         ctctTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCg                                                                                                               >  1:1192590/1‑140 (MQ=255)

                         ctctTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCg                                                                                                               >  1:242610/1‑140 (MQ=255)

                            tttcttATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGgcg                                                                                                            <  2:34470/140‑1 (MQ=255)

                              tcttATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGcgcg                                                                                                          <  2:600859/140‑1 (MQ=255)

                                   tttACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGAt                                                                                                     >  2:1093797/1‑140 (MQ=255)

                                    ttACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGCGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATc                                                                                                    >  1:1147159/1‑140 (MQ=255)

                                     tACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCa                                                                                                   <  2:1067545/140‑1 (MQ=255)

                                        ccccGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATGAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCg                                                                                                >  1:1116216/1‑140 (MQ=255)

                                        ccccGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCg                                                                                                >  2:739871/1‑140 (MQ=255)

                                        ccccGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCg                                                                                                <  1:387453/140‑1 (MQ=255)

                                        ccccGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCg                                                                                                >  2:168669/1‑140 (MQ=255)

                                        ccccGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCg                                                                                                >  1:803538/1‑140 (MQ=255)

                                        ccccGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCg                                                                                                >  1:571034/1‑140 (MQ=255)

                                          ccGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGtt                                                                                              <  2:797182/140‑1 (MQ=255)

                                             gATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCg                                                                                           <  2:242610/140‑1 (MQ=255)

                                             gATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCg                                                                                           <  2:747315/140‑1 (MQ=255)

                                             gATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCg                                                                                           <  1:411826/140‑1 (MQ=255)

                                             gATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCg                                                                                           >  1:878520/1‑140 (MQ=255)

                                             gATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCg                                                                                           <  1:44791/140‑1 (MQ=255)

                                               tGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGaa                                                                                         <  1:616074/140‑1 (MQ=255)

                                               tGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGaa                                                                                         <  1:239921/140‑1 (MQ=255)

                                                       tGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAg                                                                                 >  1:367708/1‑140 (MQ=255)

                                                        ggCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGc                                                                                <  1:1219878/140‑1 (MQ=255)

                                                         gCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCg                                                                               <  1:1301423/140‑1 (MQ=255)

                                                              tGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGtt                                                                          >  1:1138012/1‑140 (MQ=255)

                                                                          aaCCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGacac                                                              >  1:449384/1‑140 (MQ=255)

                                                                               gATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACAccgccg                                                         <  1:1093797/140‑1 (MQ=255)

                                                                               gATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCAAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACAccgccg                                                         <  1:1099280/140‑1 (MQ=255)

                                                                                         atgaCAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTc                                               >  1:20680/1‑140 (MQ=255)

                                                                                          tgaCAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTcc                                              >  2:147108/1‑140 (MQ=255)

                                                                                            aCAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTg                                            <  1:739871/140‑1 (MQ=255)

                                                                                                tCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGcc                                        >  1:66233/1‑140 (MQ=255)

                                                                                                    cAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATGGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGaa                                    <  2:1136773/140‑1 (MQ=255)

                                                                                                     aGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGaaa                                   >  2:576131/1‑140 (MQ=255)

                                                                                                      gACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCCCCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAAc                                  <  1:1337730/140‑1 (MQ=255)

                                                                                                      gACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAAc                                  <  1:141408/140‑1 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:1426026/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:1466341/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  2:330340/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:1341680/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  2:1392944/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:281216/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:124913/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:1330143/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  2:1270350/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:64757/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:70646/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:551596/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:826384/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:990371/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:335853/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTGCCTGCGCCGGAAACCAGGc                             >  1:421016/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCACTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:607181/1‑140 (MQ=255)

                                                                                                           cccATAAAGAAGAAGACGTGTGACCAGCCCACTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGc                             >  1:587208/1‑140 (MQ=255)

                                                                                                            ccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGcc                            >  1:1140104/1‑140 (MQ=255)

                                                                                                            ccATAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGcc                            >  1:399152/1‑140 (MQ=255)

                                                                                                              aTAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCCCCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGc                          <  2:367708/140‑1 (MQ=255)

                                                                                                              aTAAAGAAGAAGACGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGc                          <  2:803538/140‑1 (MQ=255)

                                                                                                                         gaCGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGAc               >  1:42530/1‑140 (MQ=255)

                                                                                                                         gaCGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGAc               >  1:808166/1‑140 (MQ=255)

                                                                                                                         gaCGTGTGACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGCATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGAc               >  2:1441885/1‑140 (MQ=255)

                                                                                                                              gtgCCCAGCCCGCTTCATGCGCCAGCCAGCCCATAATCGGCGCGAAGATCCCCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTg          <  2:36061/140‑1 (MQ=255)

                                                                                                                              gtgACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGGGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTg          <  1:1019496/140‑1 (MQ=255)

                                                                                                                              gtgACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTg          >  2:396288/1‑140 (MQ=255)

                                                                                                                              gtgACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTg          >  1:1181992/1‑140 (MQ=255)

                                                                                                                              gtgACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTg          >  1:288889/1‑140 (MQ=255)

                                                                                                                               tgACCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTGc         >  2:570771/1‑140 (MQ=255)

                                                                                                                                 cccAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTGCCg       <  1:727790/139‑1 (MQ=255)

                                                                                                                                 aCCAGCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTGCCg       >  2:14227/1‑140 (MQ=255)

                                                                                                                                     gCCCGCTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTGCCGGGGa   >  2:345885/1‑140 (MQ=255)

                                                                                                                                      cccGCTGCATGCGACAGCCAGCCCATATTCGGCGCGAAGATCCCCGTTGCGAAGTATTGGGCGGAGTAAAAAATCGACACCGCCGTTCCCCTTTCCTGCTCCGGAAACCAGGCCGCAACAATGCGACTGTTGCCGGGGaa  <  2:1291881/140‑1 (MQ=255)

CACCACCCGCGGCGATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCACTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTGCCGGGGAA  >  NC_000913/2921434‑2921707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A