Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	124	90.1	3003320	99.2%	2979293	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,488,756	G→A	A656T (GCA→ACA)	yhfK →	putative transporter YhfK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,488,756	0	G	A	99.2%	457.9 / NA	131	A656T (GCA→ACA)	yhfK	putative transporter YhfK
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (66/64); minor base T (0/1); total (66/65)
Fisher's exact test for biased strand distribution p-value = 4.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 134 total aligned reads displayed.

TGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGGCAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATG  >  NC_000913/3488622‑3488895

tGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGt                                                                                                                                        >  2:1000127/1‑140 (MQ=255)

   cacaAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACg                                                                                                                                     >  2:887270/1‑140 (MQ=255)

    acaAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGc                                                                                                                                    <  2:805041/140‑1 (MQ=255)

     caAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCt                                                                                                                                   >  1:310882/1‑140 (MQ=255)

       agagTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTgg                                                                                                                                 >  1:1202161/1‑140 (MQ=255)

        gagTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGa                                                                                                                                <  1:570012/140‑1 (MQ=255)

            aTTTACAGACTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTGTGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGGACGCTGGcgcac                                                                                                                            >  2:605917/1‑139 (MQ=255)

                  aGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTa                                                                                                                      >  1:13328/1‑140 (MQ=255)

                   gTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTAc                                                                                                                     >  2:1388365/1‑140 (MQ=255)

                   gTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTAc                                                                                                                     >  2:555071/1‑140 (MQ=255)

                    tCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACa                                                                                                                    >  2:223132/1‑140 (MQ=255)

                    tCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACa                                                                                                                    >  1:481431/1‑140 (MQ=255)

                     cTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCTATGCCAATATCATGGATGCGCCGGAGATGCAACCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAg                                                                                                                   >  1:913854/1‑140 (MQ=255)

                     cTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAg                                                                                                                   <  1:1298502/140‑1 (MQ=255)

                     cTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAg                                                                                                                   <  2:58516/140‑1 (MQ=255)

                     cTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAg                                                                                                                   >  1:321938/1‑140 (MQ=255)

                       tgtgAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCg                                                                                                                 >  2:1185859/1‑140 (MQ=255)

                       tgtgAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCg                                                                                                                 >  2:963342/1‑140 (MQ=255)

                        gtgAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCgg                                                                                                                >  1:207512/1‑140 (MQ=255)

                         tgAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCggg                                                                                                               >  2:1150134/1‑140 (MQ=255)

                          gAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGt                                                                                                              <  1:252982/140‑1 (MQ=255)

                            aaTCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTa                                                                                                            <  1:484134/140‑1 (MQ=255)

                              tCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTAtt                                                                                                          >  2:1013527/1‑140 (MQ=255)

                              tCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTAtt                                                                                                          >  2:709209/1‑140 (MQ=255)

                              tCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGA‑GCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTg                                                                                                         >  1:1348951/1‑140 (MQ=255)

                               cGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTg                                                                                                         <  1:233349/140‑1 (MQ=255)

                                 ccATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCTGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGt                                                                                                       <  2:387382/140‑1 (MQ=255)

                                 ccATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGt                                                                                                       <  1:587878/140‑1 (MQ=255)

                                 ccATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGt                                                                                                       <  1:1032075/140‑1 (MQ=255)

                                 ccATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGt                                                                                                       <  2:311925/140‑1 (MQ=255)

                                 ccATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGt                                                                                                       <  1:1146194/140‑1 (MQ=255)

                                 ccATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGt                                                                                                       <  2:133384/140‑1 (MQ=255)

                                 ccATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGt                                                                                                       <  2:850993/140‑1 (MQ=255)

                                 ccATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGt                                                                                                       <  2:874265/140‑1 (MQ=255)

                                 ccATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGt                                                                                                       <  1:371088/140‑1 (MQ=255)

                                   aTTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCa                                                                                                     >  1:52817/1‑140 (MQ=255)

                                    ttCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCAt                                                                                                    <  1:241771/140‑1 (MQ=255)

                                    ttCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCAt                                                                                                    <  1:494539/140‑1 (MQ=255)

                                     tCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATc                                                                                                   <  2:1149336/140‑1 (MQ=255)

                                          gTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAac                                                                                              <  2:1202161/140‑1 (MQ=255)

                                          gTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAac                                                                                              <  1:647054/140‑1 (MQ=255)

                                          gTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAac                                                                                              <  2:370677/140‑1 (MQ=255)

                                             gTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACAcc                                                                                           <  1:549295/140‑1 (MQ=255)

                                             gTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACAcc                                                                                           >  1:747171/1‑140 (MQ=255)

                                               cagcagCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCAt                                                                                         <  2:320331/140‑1 (MQ=255)

                                                  cagcGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGca                                                                                      <  1:1365531/140‑1 (MQ=255)

                                                  cagcGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGca                                                                                      <  1:1388365/140‑1 (MQ=255)

                                                    gcGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGcaca                                                                                    <  1:1000127/140‑1 (MQ=255)

                                                       aCTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCa                                                                                 >  2:429799/1‑140 (MQ=255)

                                                       aCTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCa                                                                                 >  1:1240851/1‑140 (MQ=255)

                                                       aCTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCa                                                                                 >  1:995431/1‑140 (MQ=255)

                                                             gTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTtcgt                                                                           <  1:511331/140‑1 (MQ=255)

                                                               aTGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTtcgtcg                                                                         <  1:1013527/140‑1 (MQ=255)

                                                                tGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGa                                                                        >  2:1121926/1‑140 (MQ=255)

                                                                tGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACAATGCACACCATTTCGTCGa                                                                        >  1:1122761/1‑140 (MQ=255)

                                                                     aaCCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGatggca                                                                   <  2:259648/140‑1 (MQ=255)

                                                                     aaCCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGatggca                                                                   >  1:660934/1‑140 (MQ=255)

                                                                     aaCCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGatggca                                                                   >  1:598489/1‑140 (MQ=255)

                                                                     aaCCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGatggca                                                                   >  1:566741/1‑140 (MQ=255)

                                                                     aaCCGGGTAGTTCTGGCG‑‑GCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGatggcatg                                                                 >  2:1105004/1‑140 (MQ=255)

                                                                      aCCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGatggcat                                                                  >  1:803299/1‑140 (MQ=255)

                                                                          ggTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCg                                                              >  2:1423793/1‑140 (MQ=255)

                                                                          ggTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCg                                                              >  2:705460/1‑140 (MQ=255)

                                                                          ggTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCg                                                              >  2:979023/1‑140 (MQ=255)

                                                                          ggTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCg                                                              >  1:607535/1‑140 (MQ=255)

                                                                          ggTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCg                                                              <  1:887270/140‑1 (MQ=255)

                                                                                 cTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGa                                                       <  2:500367/140‑1 (MQ=255)

                                                                                 cTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGa                                                       >  1:633435/1‑140 (MQ=255)

                                                                                  tGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGAc                                                      <  2:909934/140‑1 (MQ=255)

                                                                                  tGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGAc                                                      <  1:16282/140‑1 (MQ=255)

                                                                                  tGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGAc                                                      <  1:655736/140‑1 (MQ=255)

                                                                                     cGATGCCAATATCATGGA‑GCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCa                                                  <  2:1348951/140‑1 (MQ=255)

                                                                                         gCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCa                                               >  2:217674/1‑140 (MQ=255)

                                                                                         gCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCa                                               <  2:310882/140‑1 (MQ=255)

                                                                                         gCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCa                                               >  1:785397/1‑140 (MQ=255)

                                                                                                  aTGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTg                                      >  1:742399/1‑140 (MQ=255)

                                                                                                   tGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTgg                                     >  1:633286/1‑140 (MQ=255)

                                                                                                        gcgcCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAg                                >  1:1386314/1‑140 (MQ=255)

                                                                                                        gcgcCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAg                                >  1:83566/1‑140 (MQ=255)

                                                                                                         cgcCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGt                               >  1:457307/1‑140 (MQ=255)

                                                                                                         cgcCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGt                               >  1:819458/1‑140 (MQ=255)

                                                                                                         cgcCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGt                               >  1:959175/1‑140 (MQ=255)

                                                                                                          gcCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGTTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTc                              >  1:202963/1‑140 (MQ=255)

                                                                                                          gcCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTc                              >  1:623220/1‑140 (MQ=255)

                                                                                                          gcCGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTc                              >  2:61779/1‑140 (MQ=255)

                                                                                                           ccGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCg                             >  1:55311/1‑140 (MQ=255)

                                                                                                            cGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGc                            <  1:214177/140‑1 (MQ=255)

                                                                                                            cGGAGATGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGc                            <  1:555071/140‑1 (MQ=255)

                                                                                                                  tGCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTg                      <  2:1172396/140‑1 (MQ=255)

                                                                                                                   gCAGCCGCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGc                     <  2:215403/140‑1 (MQ=255)

                                                                                                                         gCACGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGAtt               >  2:1409929/1‑140 (MQ=255)

                                                                                                                            cGAAGGCGCGTCAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGGCCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGa            <  1:605917/140‑1 (MQ=255)

                                                                                                                            cGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGa            <  2:612124/140‑1 (MQ=255)

                                                                                                                            cGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGa            <  2:457307/140‑1 (MQ=255)

                                                                                                                            cGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCATCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGa            <  1:1120122/140‑1 (MQ=255)

                                                                                                                            cGAAGGCGCGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATCTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGa            <  2:747171/140‑1 (MQ=255)

                                                                                                                                 gcgcGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCg       <  2:803299/140‑1 (MQ=255)

                                                                                                                                 gcgcGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCg       <  2:543727/140‑1 (MQ=255)

                                                                                                                                 gcgcGACAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCg       <  2:13328/140‑1 (MQ=255)

                                                                                                                                      gCAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACTCCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATg  <  2:1106256/140‑1 (MQ=255)

TGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGTAGTTCTGGCGATGCCAATATCATGGATGCGCCGGAGATGCAGCCGCACGAAGGCGCGGCAGGTACGCTGGAGCAGCATTTACAGCGGGTTATTGGTCATCTGAACACCATGCACACCATTTCGTCGATGGCATGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATG  >  NC_000913/3488622‑3488895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A