Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	132	61.4	2079690	99.1%	2060972	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,486,541	A→G	T1161A (ACG→GCG)	hrpA →	ATP‑dependent RNA helicase HrpA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,486,541	0	A	G	100.0%	224.4 / NA	60	T1161A (ACG→GCG)	hrpA	ATP‑dependent RNA helicase HrpA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (29/31); total (29/31)

GCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTACGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATCGCGGTTTTGTCACTGGTAACGGCTTCAAACGG  >  NC_000913/1486404‑1486675

gCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCg                                                                                                                                      >  2:602787/1‑140 (MQ=255)

 cGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCgg                                                                                                                                     <  2:590609/140‑1 (MQ=255)

 cGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCgg                                                                                                                                     <  2:30188/140‑1 (MQ=255)

    tgtgGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAg                                                                                                                                  >  2:507528/1‑140 (MQ=255)

    tgtgGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAg                                                                                                                                  <  2:148377/140‑1 (MQ=255)

    tgtgGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAg                                                                                                                                  >  1:513370/1‑140 (MQ=255)

      tgGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAgtg                                                                                                                                >  2:959883/1‑140 (MQ=255)

             aTTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAata                                                                                                                         >  1:266608/1‑140 (MQ=255)

                   cGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATcaaca                                                                                                                   <  2:426539/140‑1 (MQ=255)

                      cGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAAc                                                                                                                <  2:68079/140‑1 (MQ=255)

                            tggtggCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGa                                                                                                          <  2:277474/140‑1 (MQ=255)

                            tggtggCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGa                                                                                                          <  2:523046/140‑1 (MQ=255)

                                ggCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAgg                                                                                                      <  2:266608/140‑1 (MQ=255)

                                ggCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAgg                                                                                                      <  1:954050/140‑1 (MQ=255)

                                 gCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAggg                                                                                                     <  2:741430/140‑1 (MQ=255)

                                 gCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAggg                                                                                                     >  2:258923/1‑140 (MQ=255)

                                    cGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCgg                                                                                                  <  1:988584/140‑1 (MQ=255)

                                     ggTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCggg                                                                                                 <  1:507528/140‑1 (MQ=255)

                                     ggTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCggg                                                                                                 <  1:345466/140‑1 (MQ=255)

                                     ggTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCggg                                                                                                 <  2:161150/140‑1 (MQ=255)

                                      gTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGCGGTGGCTATTGCGAAGCAGGCCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGt                                                                                                >  2:132579/1‑140 (MQ=255)

                                              ggAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGa                                                                                        >  1:18078/1‑140 (MQ=255)

                                                aagaagGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGAcc                                                                                      >  1:173526/1‑140 (MQ=255)

                                                aagaagGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGAcc                                                                                      >  2:594514/1‑140 (MQ=255)

                                                aagaagGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGAcc                                                                                      >  1:191017/1‑140 (MQ=255)

                                                 agaagGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCa                                                                                     <  1:599225/140‑1 (MQ=255)

                                                 agaagGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCa                                                                                     >  2:851629/1‑140 (MQ=255)

                                                 agaagGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCa                                                                                     >  1:175891/1‑140 (MQ=255)

                                                  gaagGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCAt                                                                                    <  2:755168/140‑1 (MQ=255)

                                                     ggCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGgc                                                                                 >  2:754576/1‑140 (MQ=255)

                                                       cTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGgcgc                                                                               <  1:812856/140‑1 (MQ=255)

                                                        tttGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCt                                                                              >  2:22115/1‑140 (MQ=255)

                                                          tgctgcGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGggagga                                                                                             >  1:510606/1‑123 (MQ=255)

                                                          tgctgcGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGa                                                                                             <  2:510606/123‑1 (MQ=255)

                                                           gctgcgctgcATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTggg                                                                           <  2:191232/140‑1 (MQ=255)

                                                            ctgcgctgcATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCTCTgggg                                                                          >  2:495393/1‑140 (MQ=255)

                                                                 ctgcATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTc                                                                     <  1:267718/140‑1 (MQ=255)

                                                                    cATGAAAAAGTGCGTGCCGAACTGAAGGACACGGTGGTGGATATTGGGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGa                                                                  >  2:832435/1‑140 (MQ=255)

                                                                                cgtgcCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCa                                                      >  1:227581/1‑140 (MQ=255)

                                                                                      gAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGTCCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATggg                                                <  1:754576/140‑1 (MQ=255)

                                                                                      gAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATggg                                                <  2:409612/140‑1 (MQ=255)

                                                                                      gAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATggg                                                <  1:959883/140‑1 (MQ=255)

                                                                                        aCTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCg                                              <  2:325562/140‑1 (MQ=255)

                                                                                        aCTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCg                                              <  1:22115/140‑1 (MQ=255)

                                                                                         cTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCgg                                             <  1:851629/140‑1 (MQ=255)

                                                                                          tGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCggg                                            <  2:582992/140‑1 (MQ=255)

                                                                                                   cGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTatat                                   <  2:521452/140‑1 (MQ=255)

                                                                                                    ggtggtGGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATc                                  >  2:725736/1‑140 (MQ=255)

                                                                                                     gtggtgGATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATcg                                 <  2:175891/140‑1 (MQ=255)

                                                                                                           gATATTGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATCGCGGttt                           >  1:78501/1‑140 (MQ=255)

                                                                                                                tGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATCGCGGTTTTGTCa                      >  1:848684/1‑140 (MQ=255)

                                                                                                                tGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATCGCGGTTTTGTCa                      >  1:662917/1‑140 (MQ=255)

                                                                                                                tGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATCGCGGTTTTGTCa                      >  1:412435/1‑140 (MQ=255)

                                                                                                                tGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATCGCGGTTTTGTCa                      >  1:382586/1‑140 (MQ=255)

                                                                                                                tGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATCGCGGTTTTGTCa                      <  2:513370/140‑1 (MQ=255)

                                                                                                                tGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATCGCGGTTTTGTCa                      >  2:824525/1‑140 (MQ=255)

                                                                                                                tGCGAAGCAGGTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATCGCGGTTTTGTCa                      >  2:996220/1‑140 (MQ=255)

                                                                                                                          gTCGAGCAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATCGCGGTTTTGTCACTGGTAACgg            >  1:358903/1‑140 (MQ=255)

                                                                                                                                cAAATCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATCGCGGTTTTGTCACTGGTAACGGCTTCaa      >  2:832227/1‑140 (MQ=255)

                                                                                                                                    tCCTTGCGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATCGCGGTTTTGTCACTGGTAACGGCTTCAAACgg  <  2:18078/140‑1 (MQ=255)

GCGGTGTGGATAAATTGATCGACGCCAATGGTGGCCCGGTCTGGACGGAAGAAGGCTTTGCTGCGCTGCATGAAAAAGTGCGTGCCGAACTGAACGACACGGTGGTGGATATTGCGAAGCAGGTCGAGCAAATCCTTACGGCAGTGTTCAATATCAACAAACGTCTGAAAGGGCGGGTGGATATGACCATGGCGCTGGGGCTTTCTGACATTAAAGCGCAGATGGGCGGGTTGGTATATCGCGGTTTTGTCACTGGTAACGGCTTCAAACGG  >  NC_000913/1486404‑1486675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A