Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 132 61.4 2079690 99.1% 2060972 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,647,076 T→C intergenic (+339/+98) flxA → / ← ydfW Qin prophage; protein FlxA/Qin prophage; uncharacterized protein YdfW

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,647,0760TC100.0% 284.5 / NA 75intergenic (+339/+98)flxA/ydfWQin prophage; protein FlxA/Qin prophage; uncharacterized protein YdfW
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (38/37);  total (38/37)

TTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAGGCTTCTTTTTAG  >  NC_000913/1646942‑1647208
                                                                                                                                      |                                                                                                                                    
tttGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAAc                                                                                                                                 <  2:650081/140‑1 (MQ=255)
         aCAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACaa                                                                                                                        >  2:546758/1‑140 (MQ=255)
          cAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACaaa                                                                                                                       <  2:389421/140‑1 (MQ=255)
           aGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAac                                                                                                                      >  1:819330/1‑140 (MQ=255)
            gTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAacc                                                                                                                     >  2:281187/1‑140 (MQ=255)
             tCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAaccc                                                                                                                    >  2:971025/1‑139 (MQ=255)
             tCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAacca                                                                                                                    >  2:912701/1‑140 (MQ=255)
             tCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAacca                                                                                                                    >  1:1939/1‑140 (MQ=255)
             tCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAacca                                                                                                                    >  2:306239/1‑140 (MQ=255)
             tCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAacca                                                                                                                    >  2:28723/1‑140 (MQ=255)
              ccACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAaccac                                                                                                                   >  1:921105/1‑140 (MQ=255)
                 caAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCg                                                                                                                >  1:557635/1‑140 (MQ=255)
                       tGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATg                                                                                                          <  2:151525/140‑1 (MQ=255)
                       tGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATg                                                                                                          <  2:223322/140‑1 (MQ=255)
                       tGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATg                                                                                                          <  2:524711/140‑1 (MQ=255)
                                  gCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGaaa                                                                                               <  2:989103/140‑1 (MQ=255)
                                    ttcttGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAcg                                                                                             <  1:282882/140‑1 (MQ=255)
                                      cttGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAcgcg                                                                                           <  1:251096/140‑1 (MQ=255)
                                       ttGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGa                                                                                          <  1:666765/140‑1 (MQ=255)
                                       ttGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGa                                                                                          >  1:991100/1‑140 (MQ=255)
                                       ttGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATCAACACCAGAAACGCGa                                                                                          <  2:785251/140‑1 (MQ=255)
                                           tctTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTa                                                                                      <  1:787258/140‑1 (MQ=255)
                                           tctTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTa                                                                                      <  2:802821/140‑1 (MQ=255)
                                           tctTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTa                                                                                      <  1:912701/140‑1 (MQ=255)
                                           tctTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTa                                                                                      <  1:86559/140‑1 (MQ=255)
                                               aGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa                                                                                  <  2:23279/140‑1 (MQ=255)
                                                gCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAAt                                                                                 <  2:857600/140‑1 (MQ=255)
                                                 cGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAGCTCCAGAAACGCGACTTAAGAATc                                                                                <  2:471036/140‑1 (MQ=255)
                                                 cGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATc                                                                                <  2:819330/140‑1 (MQ=255)
                                                 cGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATc                                                                                <  2:390458/140‑1 (MQ=255)
                                                     cATTAGCATAGGCTATTTACCATAGCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc                                                                            <  2:126642/140‑1 (MQ=255)
                                                     cATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc                                                                            <  2:1939/140‑1 (MQ=255)
                                                     cATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc                                                                            <  1:37680/140‑1 (MQ=255)
                                                      aTTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAccc                                                                           >  1:803371/1‑140 (MQ=255)
                                                          gCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATg                                                                       <  2:593175/140‑1 (MQ=255)
                                                            aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATTTCCCCGGCAAAACAAGTAACAAACCTCCCGAAAATGAACCCCAGATACGCGACTTAAGAATCTTCCCTATGaa                                                                     <  2:847466/140‑1 (MQ=255)
                                                            aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGaa                                                                     <  1:742761/140‑1 (MQ=255)
                                                            aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGaa                                                                     <  2:557635/140‑1 (MQ=255)
                                                               ggCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATgg                                                                  <  1:443594/140‑1 (MQ=255)
                                                                gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa                                                                 >  2:519210/1‑140 (MQ=255)
                                                                    tttACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATg                                                             >  1:698425/1‑140 (MQ=255)
                                                                     ttACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc                                                            >  1:697471/1‑140 (MQ=255)
                                                                      tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCa                                                           <  1:837916/140‑1 (MQ=255)
                                                                      tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCa                                                           <  1:130275/140‑1 (MQ=255)
                                                                         cATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTc                                                        >  2:240433/1‑140 (MQ=255)
                                                                          aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCa                                                       >  1:569538/1‑140 (MQ=255)
                                                                           tAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCaa                                                      <  2:758660/140‑1 (MQ=255)
                                                                            aaCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAc                                                     <  2:734193/140‑1 (MQ=255)
                                                                              cGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg                                                   >  1:674521/1‑140 (MQ=255)
                                                                              cGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg                                                   >  2:473161/1‑140 (MQ=255)
                                                                              cGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg                                                   >  2:525385/1‑140 (MQ=255)
                                                                              cGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg                                                   >  2:24338/1‑140 (MQ=255)
                                                                              cGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg                                                   >  2:855522/1‑140 (MQ=255)
                                                                                 cTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAAt                                                >  2:811795/1‑140 (MQ=255)
                                                                                 cTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAAt                                                >  1:489213/1‑140 (MQ=255)
                                                                                  tCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATc                                               >  1:199840/1‑140 (MQ=255)
                                                                                  tCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATc                                               >  2:4904/1‑140 (MQ=255)
                                                                                   cATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCg                                              >  2:711779/1‑140 (MQ=255)
                                                                                      tACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATc                                           <  1:855522/140‑1 (MQ=255)
                                                                                             aCCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGttt                                    >  2:562211/1‑140 (MQ=255)
                                                                                             aCCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGttt                                    >  1:181655/1‑140 (MQ=255)
                                                                                                gCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCaa                                 >  2:247473/1‑140 (MQ=255)
                                                                                                 cccAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAAt                                >  2:809148/1‑140 (MQ=255)
                                                                                                      actgactCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtttt                           <  1:102676/140‑1 (MQ=255)
                                                                                                         gactCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTa                        >  2:834695/1‑140 (MQ=255)
                                                                                                          actCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTAt                       <  2:222981/140‑1 (MQ=255)
                                                                                                          actCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTAt                       <  1:834695/140‑1 (MQ=255)
                                                                                                           ctCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATc                      >  1:617091/1‑140 (MQ=255)
                                                                                                                cgcgTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGAt                 >  1:554919/1‑140 (MQ=255)
                                                                                                                cgcgTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGAt                 <  2:199840/140‑1 (MQ=255)
                                                                                                                cgcgTTTCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGAt                 <  2:698425/140‑1 (MQ=255)
                                                                                                                    tttCTGGCATATCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAgg             <  1:539419/140‑1 (MQ=255)
                                                                                                                               tCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAGGCTTCTTTTTAg  >  1:967952/1‑140 (MQ=255)
                                                                                                                               tCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAGGCTTCTTTTTAg  >  2:728806/1‑140 (MQ=255)
                                                                                                                               tCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAGGCTTCTTTTTAg  >  2:919242/1‑140 (MQ=255)
                                                                                                                               tCCCCGGCAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAGGCTTCTTTTTAg  >  1:161552/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                    
TTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTATCGGGATCAGGCTTCTTTTTAG  >  NC_000913/1646942‑1647208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A