Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
132 |
61.4 |
2079690 |
99.1% |
2060972 |
139.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,363,421 |
T→C |
G71G (GGA→GGG) |
yfaY ← |
IPR008135 CinA family protein YfaY |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,363,421 | 0 | T | C | 100.0%
| 66.8
/ NA
| 19 | G71G (GGA→GGG) | yfaY | IPR008135 CinA family protein YfaY |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (15/4); total (15/4) |
TTACGGTTGCTCGGTGCCATTACTCGTCCACGTTCGTGGAAATAGCGTTCCATCTCTTTGAGCCAGGCTTCATGCAGCACCAGGCCTTCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGTCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATCCCCCACCGTATTGCGGCGAGATAATGGCAACCCCTGATGAAAGAAAAAATCGGC > NC_000913/2363284‑2363555
|
ttACGGTTGCTCGGTGCCATTACTCGTCCACGTTCGTGGAAATAGCGTTCCATCTCTTTGAGCCAGGCTTCATGCAGCACCAGGCCTTCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGccc > 1:70415/1‑140 (MQ=255)
ttGCTCGGGGCCATTCCCCGCCCCCGTTCGGGAAAATAGCTTCCCTTCTTTTGGAGCCGGGTTTCATGCAGCACCAGGCCTTCCCTTTTTGCTGCCGCGGCGGCGAGGGCGTTAAAATCATCGCTGGTCGGCCCCAGccc < 2:106353/140‑1 (MQ=255)
cTCGGTGCCATTACTCGTCCACGTTCGTGGAAATAGCGTTCCATCTCTTTGAGCCAGGCTTCATGCAGCACCAGGCCTTCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCccgcc > 1:206223/1‑140 (MQ=255)
ggTGCCATTACTCGTCCACGTTCGTGGAAATAGCGTTCCATCTCTTTGAGCCAGGCTTCATGCAGCACCAGGCCTTCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCCCGCCGtt > 1:308051/1‑140 (MQ=255)
tGCCATTACTCGTCCACGTTCGTGGAAATAGCGTTCCATCTCTTTGAGCCAGGCTTCATGCAGCACCAGGCCTTCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCCCGCCGTTaa > 1:397395/1‑140 (MQ=255)
tCCACGTTCGTGGAAATAGCGTTCCATCTCTTTGAGCCAGGCTTCATGCAGCACCAGGCCTTCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCCCGCCGTTAACGATCAGCACAt > 1:646197/1‑140 (MQ=255)
cACGTTCGTGGAAATAGCGTTCCATCTCTTTGAGCCAGGCTTCATGCAGCACCAGGCCTTCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCCCGCCGTTAACGATCAGCACATCg > 2:13090/1‑140 (MQ=255)
cGTTCGTGGAAATAGCGTTCCATCTCTTTGAGCCAGGCTTCATGCAGCACCAGGCCTTCACTTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCCCGCCGTTAACGATCAGCACATCGGc > 2:591752/1‑140 (MQ=255)
aGCGTTCCATCTCTTTGAGCCAGGCTTCATGCAGCACCAGGCCTTCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGACCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGt > 2:13453/1‑140 (MQ=255)
gCTTCATGCAGCACCAGGCTTTCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGtc > 2:974961/1‑140 (MQ=255)
ttCATGCGGCCCCAGCCCTTCCCTTTTGGCGGGCGCGGCGGGGAGTGCGCTTAAATCATCGGTGGTCGGCCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGtcat < 2:308051/140‑1 (MQ=255)
cATGCAGCACCAGGCCTTCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGtcatca > 2:204932/1‑140 (MQ=255)
aCCAGGCCTTCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATc > 1:729318/1‑140 (MQ=255)
ccAGGCCTTCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATcc > 1:693933/1‑140 (MQ=255)
tCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATCCCCCACCGt > 2:307573/1‑140 (MQ=255)
tCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATCCCCCACCGt > 1:220994/1‑140 (MQ=255)
tCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCCGCCCCAGCCCGCCGTTTACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGTCTAAGTCATCAAGGTTATCCCCCACCga > 2:248286/1‑139 (MQ=255)
ctttttGCTGCCGCAGCGGCGGGTGCGTTAAAATCTCCGCGGGTCGCCCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATCCCCCACCGTAtt < 1:13090/138‑1 (MQ=255)
ttGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATCCCCCACCGTATTgcgg > 1:338246/1‑140 (MQ=255)
ttGCGGCCGCGGGGGCGAGTGCTTTAAAATCACCGCGGGTCGGCCCCCCCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATCCCCCACCGTATTgcgg < 2:38183/140‑1 (MQ=255)
tgctgcCGCGGCGGCGAGTGCGTTAAAATCTTCGCGGGTCGCCCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATCCCCCACCGTATTgcggc < 1:591752/140‑1 (MQ=255)
cGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGCCCCAGCCCGCCGGTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATCCCCCACCGTATTGCGGCGAGATa > 1:108082/1‑140 (MQ=255)
gggcgGGTGCGTTTAAATCCCCGCGGGTCGGCCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATCCCCCACCGTATTGCGGCGAGATAATGGc < 1:687627/139‑1 (MQ=255)
cggcgAGTGCGCTTAAATCATCGCTGGTCGACCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATCCCCCACCGTATTGCGGCGAGATAATGGc < 1:13453/140‑1 (MQ=255)
gggtcggccCCGCCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATCCCCCACCGTATTGCGGCGAGATAATGGCAACCCCTGATGAAAGAAAAAATCg < 2:206223/139‑1 (MQ=255)
gtcggccCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATCCCCCACCGTATTGCGGCGAGATAATGGCAACCCCTGATGAAAGAAAAAATCGgc > 2:912583/1‑140 (MQ=255)
|
TTACGGTTGCTCGGTGCCATTACTCGTCCACGTTCGTGGAAATAGCGTTCCATCTCTTTGAGCCAGGCTTCATGCAGCACCAGGCCTTCACCTTTTGCTGTCGCAGCGGCGAGTGCGCTTAAATCATCGCTGGTCGGTCCCAGCCCGCCGTTAACGATCAGCACATCGGCGTGCTGACTACGTTCGCGAAGAATGGTGACTAAGTCATCAAGGTTATCCCCCACCGTATTGCGGCGAGATAATGGCAACCCCTGATGAAAGAAAAAATCGGC > NC_000913/2363284‑2363555
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
