Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 132 61.4 2079690 99.1% 2060972 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,996,027 T→C pseudogene (334/399 nt) ygeO ← putative uncharacterized protein YgeO

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,996,0270TC100.0% 301.4 / NA 80pseudogene (334/399 nt)ygeOputative uncharacterized protein YgeO
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (23/57);  total (23/57)

TTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGTAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTTATATAGGGTAACAACGTTGAAAAACCA  >  NC_000913/2995891‑2996163
                                                                                                                                         |                                                                                                                                        
ttGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAAt                                                                                                                                       >  2:450645/1‑140 (MQ=255)
ttGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAAt                                                                                                                                       >  2:407166/1‑140 (MQ=255)
   cGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATtct                                                                                                                                    <  2:608631/140‑1 (MQ=255)
   cGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATtct                                                                                                                                    <  1:852547/140‑1 (MQ=255)
     gtggtTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATtctct                                                                                                                                  >  1:512050/1‑140 (MQ=255)
      tggtTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATtctctc                                                                                                                                 <  1:453/140‑1 (MQ=255)
         tttCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTaa                                                                                                                              <  1:727555/140‑1 (MQ=255)
          ttCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTaaa                                                                                                                             >  1:524888/1‑140 (MQ=255)
           tCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTaaaa                                                                                                                            <  2:69186/140‑1 (MQ=255)
                aagGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGtt                                                                                                                       <  1:779669/140‑1 (MQ=255)
                  ggATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGa                                                                                                                     >  2:664595/1‑140 (MQ=255)
                  ggATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGa                                                                                                                     >  2:632799/1‑140 (MQ=255)
                  ggATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGa                                                                                                                     >  1:939288/1‑140 (MQ=255)
                   gATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGAt                                                                                                                    >  1:225751/1‑140 (MQ=255)
                      tttttCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTATTTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTT‑ATGCa                                                                                                                 <  1:248078/140‑1 (MQ=255)
                      tttttCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCa                                                                                                                 <  1:10361/140‑1 (MQ=255)
                        tttCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAg                                                                                                               <  2:613125/140‑1 (MQ=255)
                            tttAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGt                                                                                                           <  1:247854/140‑1 (MQ=255)
                            tttAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGt                                                                                                           <  2:940527/140‑1 (MQ=255)
                              tAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTaa                                                                                                         <  2:1008137/140‑1 (MQ=255)
                                agagAAACTATTTCTTTCAATCCATCAGAAATTTTTNNNNNAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACg                                                                                                       <  2:457026/140‑1 (MQ=255)
                                agagAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACg                                                                                                       <  1:1030838/140‑1 (MQ=255)
                                agagAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACg                                                                                                       <  1:974196/140‑1 (MQ=255)
                                agagAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACg                                                                                                       <  2:523559/140‑1 (MQ=255)
                                 gagaAACTATTTCTTTCAATCTATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACgg                                                                                                      <  1:984212/140‑1 (MQ=255)
                                 gagaAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACgg                                                                                                      <  2:64819/140‑1 (MQ=255)
                                 gagaAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACgg                                                                                                      <  1:460230/140‑1 (MQ=255)
                                 gagaAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACgg                                                                                                      <  1:428113/140‑1 (MQ=255)
                                   gaAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCg                                                                                                    <  1:826855/140‑1 (MQ=255)
                                    aaaCTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGa                                                                                                   >  2:541518/1‑140 (MQ=255)
                                    aaaCTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGa                                                                                                   <  2:1027589/140‑1 (MQ=255)
                                     aaCTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGAt                                                                                                  <  1:345373/140‑1 (MQ=255)
                                     aaCTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGAATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGAt                                                                                                  <  2:1018346/140‑1 (MQ=255)
                                          tttctttcAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTAt                                                                                             <  2:509697/140‑1 (MQ=255)
                                          tttctttcAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTAt                                                                                             <  1:407166/140‑1 (MQ=255)
                                            tctttcAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTAtgt                                                                                           >  1:343353/1‑140 (MQ=255)
                                               ttcAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGt                                                                                        >  1:102796/1‑140 (MQ=255)
                                                    tCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTcaaca                                                                                   >  2:937933/1‑140 (MQ=255)
                                                    tCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTcaaca                                                                                   >  2:236976/1‑140 (MQ=255)
                                                       aTCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACaaaa                                                                                >  2:224009/1‑140 (MQ=255)
                                                       aTCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACaaaa                                                                                >  2:402793/1‑140 (MQ=255)
                                                        tCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAAt                                                                               <  2:647301/140‑1 (MQ=255)
                                                           gAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑‑TTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAgg                                                                           <  2:588562/140‑1 (MQ=255)
                                                                 tttCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAaata                                                                      <  1:54192/140‑1 (MQ=255)
                                                                 ttacTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAaata                                                                      <  2:637676/137‑1 (MQ=255)
                                                                  ttCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAaataa                                                                     >  1:959909/1‑140 (MQ=255)
                                                                            cacaACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAAtaaattaaat                                                           <  2:268389/140‑1 (MQ=255)
                                                                            cacaACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAAtaaattaaat                                                           <  2:887418/140‑1 (MQ=255)
                                                                                acacCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGtt                                                       <  2:595983/140‑1 (MQ=255)
                                                                                acacCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGtt                                                       <  1:632799/140‑1 (MQ=255)
                                                                                 cacCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTtg                                                      <  2:301067/140‑1 (MQ=255)
                                                                                 cacCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTtg                                                      <  2:416906/140‑1 (MQ=255)
                                                                                 cacCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTtg                                                      <  1:62937/140‑1 (MQ=255)
                                                                                      tttGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCa                                                 <  2:524888/140‑1 (MQ=255)
                                                                                      tttGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCa                                                 >  1:358795/1‑140 (MQ=255)
                                                                                      tttGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCa                                                 <  2:631953/140‑1 (MQ=255)
                                                                                      tttGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCa                                                 >  2:943048/1‑140 (MQ=255)
                                                                                                  tttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgtt                                     >  2:264616/1‑140 (MQ=255)
                                                                                                   ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  2:512050/140‑1 (MQ=255)
                                                                                                   ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  1:647972/140‑1 (MQ=255)
                                                                                                   ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  2:551188/140‑1 (MQ=255)
                                                                                                   ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  2:755248/140‑1 (MQ=255)
                                                                                                   ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  2:939288/140‑1 (MQ=255)
                                                                                                   ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  1:1036605/140‑1 (MQ=255)
                                                                                                   ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  1:937933/140‑1 (MQ=255)
                                                                                                   ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  1:516727/140‑1 (MQ=255)
                                                                                                   ttATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAAACGTTGCTGCATTGCCAATGgttg                                    <  2:726575/140‑1 (MQ=255)
                                                                                                   ttATCAAGCTCATCTCTA‑TCTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGgttg                                    <  1:775354/140‑1 (MQ=255)
                                                                                                        aaGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGcc                               <  2:343353/140‑1 (MQ=255)
                                                                                                        aaGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGcc                               <  1:285914/140‑1 (MQ=255)
                                                                                                        aaGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGcc                               <  2:297157/140‑1 (MQ=255)
                                                                                                        aaGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGcc                               <  1:664595/140‑1 (MQ=255)
                                                                                                        aaGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGcc                               <  1:920268/140‑1 (MQ=255)
                                                                                                         aGCTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCt                              >  2:519544/1‑140 (MQ=255)
                                                                                                           cTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTGTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTta                            <  1:31892/140‑1 (MQ=255)
                                                                                                           cTCATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGGTGTTGCCTta                            >  2:233185/1‑140 (MQ=255)
                                                                                                             cATCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTtata                          <  1:530216/140‑1 (MQ=255)
                                                                                                              aTCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTtatat                         >  2:873396/1‑140 (MQ=255)
                                                                                                              aTCTCTA‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTtatat                         >  1:763329/1‑140 (MQ=255)
                                                                                                                    a‑TTTTTTTTCGCATAAAATGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTTATATAGGGTa                   <  2:959909/140‑1 (MQ=255)
                                                                                                                                      aTGCAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTTATATAGGGTAACAACGTTGAAAAACca  <  2:358795/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
TTGCGGTGGTTTCAAGAAGGATTTTTTCTTTAAGAGAAACTATTTCTTTCAATCCATCAGAAATTTTTCTTTTAATCACAACACCATTTGCAGGAGATTTTATCAAGCTCATCTCTA‑TTTTTTTTCGCATAAAATGTAATTCTCTCTAAAAGTGTTGATGCAAGTGGTAACGGCGATTGTATGTGGTCAACAAAATCAGGAAATAATAAATTAAATCGTTGCTGCATTGCCAATGGTTGTTGCCTTATATAGGGTAACAACGTTGAAAAACCA  >  NC_000913/2995891‑2996163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A