Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F28 I1 R1	120	97.0	3206026	99.3%	3183583	140.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,576,345	A→T	Y425* (TAT→TAA)	yddB ←	putative TonB‑dependent receptor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,576,345	0	A	T	100.0%	457.8 / NA	128	Y425* (TAT→TAA)	yddB	putative TonB‑dependent receptor
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (73/55); total (73/55)

Only 100 of 131 total aligned reads displayed.

CACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTA  >  NC_000913/1576210‑1576481

cACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAgg                                                                                                                                      >  2:1108704/1‑140 (MQ=255)

cACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAgg                                                                                                                                      >  1:246000/1‑140 (MQ=255)

cACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAgg                                                                                                                                      >  2:663573/1‑140 (MQ=255)

cACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAgg                                                                                                                                      >  1:639809/1‑140 (MQ=255)

cACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAgg                                                                                                                                      >  2:1392717/1‑140 (MQ=255)

  cGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGAt                                                                                                                                    >  1:1600706/1‑140 (MQ=255)

  cGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGAt                                                                                                                                    >  2:160368/1‑140 (MQ=255)

  cGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGAt                                                                                                                                    >  2:1591678/1‑140 (MQ=255)

  cGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGAATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGAt                                                                                                                                    >  1:641336/1‑140 (MQ=255)

   gCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGAtt                                                                                                                                   >  1:1569631/1‑140 (MQ=255)

      gggCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAg                                                                                                                                <  2:742757/140‑1 (MQ=255)

      gggCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAg                                                                                                                                <  1:975100/140‑1 (MQ=255)

       ggCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTGTGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGa                                                                                                                               >  2:1217007/1‑140 (MQ=255)

                gACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCGGCATTAATCACTTAGGATTCAGACTGGTTATg                                                                                                                      <  1:540842/140‑1 (MQ=255)

                gACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATg                                                                                                                      <  1:41639/140‑1 (MQ=255)

                   acaTTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCg                                                                                                                   >  2:758000/1‑140 (MQ=255)

                    caTTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGt                                                                                                                  <  2:1207695/140‑1 (MQ=255)

                     aTTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGtt                                                                                                                 <  2:346052/140‑1 (MQ=255)

                       tACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCa                                                                                                               >  2:25729/1‑140 (MQ=255)

                       tACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCa                                                                                                               >  1:661671/1‑140 (MQ=255)

                         cGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGt                                                                                                             >  1:1241382/1‑140 (MQ=255)

                         cGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGt                                                                                                             >  1:220102/1‑140 (MQ=255)

                           ccAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTcc                                                                                                           >  2:1317282/1‑140 (MQ=255)

                            cAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCa                                                                                                          <  1:1578548/140‑1 (MQ=255)

                              gCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACg                                                                                                        <  1:920161/140‑1 (MQ=255)

                                 aaTGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCAt                                                                                                     <  2:661277/140‑1 (MQ=255)

                                 aaTGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCAt                                                                                                     <  1:1056487/140‑1 (MQ=255)

                                    gCGATCCGCCATAGACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCgg                                                                                                  <  2:1323203/140‑1 (MQ=255)

                                      gATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGaa                                                                                                <  1:1491197/140‑1 (MQ=255)

                                      gATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGaa                                                                                                <  2:1167774/140‑1 (MQ=255)

                                        tCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATa                                                                                              >  1:209101/1‑140 (MQ=255)

                                        tCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATa                                                                                              >  1:1529635/1‑140 (MQ=255)

                                        tCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTAGTTATGGCGTTCAGTCCACGCATCGGAATa                                                                                              >  1:736261/1‑140 (MQ=255)

                                        tCCGCCATATACAGCGAGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGGTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATa                                                                                              >  2:836208/1‑140 (MQ=255)

                                             cATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGt                                                                                         >  2:45374/1‑140 (MQ=255)

                                                     gCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCcgcg                                                                                 <  2:558798/140‑1 (MQ=255)

                                                     gCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCcgcg                                                                                 <  1:1017389/140‑1 (MQ=255)

                                                      cGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCgcgc                                                                                >  2:1287842/1‑140 (MQ=255)

                                                      cGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCgcgc                                                                                >  2:1378386/1‑140 (MQ=255)

                                                      cGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCgcgc                                                                                >  2:1405498/1‑140 (MQ=255)

                                                      cGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCgcgc                                                                                >  1:900527/1‑140 (MQ=255)

                                                      cGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCgcgc                                                                                >  1:805153/1‑140 (MQ=255)

                                                      cGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCgcgc                                                                                >  1:766561/1‑140 (MQ=255)

                                                      cGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCgcgc                                                                                >  1:10432/1‑140 (MQ=255)

                                                      cGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCgcgc                                                                                >  1:1433869/1‑140 (MQ=255)

                                                      cGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCgcgc                                                                                >  1:1313706/1‑140 (MQ=255)

                                                      cGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCgcgc                                                                                >  1:1272642/1‑140 (MQ=255)

                                                      cGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCgcgc                                                                                >  1:526758/1‑140 (MQ=255)

                                                         gtAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGa                                                                             >  1:756473/1‑140 (MQ=255)

                                                         gtAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGa                                                                             >  2:1230615/1‑140 (MQ=255)

                                                           aGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAg                                                                           >  1:1136676/1‑140 (MQ=255)

                                                           aGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAg                                                                           >  2:1270737/1‑140 (MQ=255)

                                                           aGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAg                                                                           >  1:137800/1‑140 (MQ=255)

                                                           aGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAg                                                                           >  2:1498942/1‑140 (MQ=255)

                                                               gTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAgg                                                                       >  1:1451434/1‑140 (MQ=255)

                                                                tCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAggg                                                                      >  1:1085432/1‑140 (MQ=255)

                                                                tCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAggg                                                                      >  2:851734/1‑140 (MQ=255)

                                                                 cAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGt                                                                     <  1:991659/140‑1 (MQ=255)

                                                                 cAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGt                                                                     <  1:1392717/140‑1 (MQ=255)

                                                                 cAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGt                                                                     <  1:1550384/140‑1 (MQ=255)

                                                                   aTTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTg                                                                   <  1:25729/140‑1 (MQ=255)

                                                                    ttCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGa                                                                  >  2:1369467/1‑140 (MQ=255)

                                                                       ccAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGc                                                               <  2:1529635/140‑1 (MQ=255)

                                                                       ccAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGc                                                               <  2:635917/140‑1 (MQ=255)

                                                                        cAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCg                                                              <  2:1241382/140‑1 (MQ=255)

                                                                        cAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCg                                                              <  1:1108704/140‑1 (MQ=255)

                                                                              gcCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACAt                                                        >  2:1241463/1‑140 (MQ=255)

                                                                                 tttacctttaTGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTAc                                                     <  2:661671/140‑1 (MQ=255)

                                                                                  ttacctttaTGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTAcc                                                    <  1:491738/140‑1 (MQ=255)

                                                                                        ttaTGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGc                                              <  1:703503/140‑1 (MQ=255)

                                                                                         taTGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCg                                             >  2:479243/1‑140 (MQ=255)

                                                                                                aaTGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAAttttt                                      >  2:859748/1‑140 (MQ=255)

                                                                                                aaTGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAAttttt                                      >  1:847354/1‑140 (MQ=255)

                                                                                                  tggtatggtTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGc                                    <  1:1498942/140‑1 (MQ=255)

                                                                                                  tggtatggtTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGc                                    <  2:766561/140‑1 (MQ=255)

                                                                                                  tggtatggtTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGc                                    <  2:1285234/140‑1 (MQ=255)

                                                                                                  tggtatggtTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGc                                    <  2:109028/140‑1 (MQ=255)

                                                                                                     tatggtTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAg                                 >  1:1460726/1‑140 (MQ=255)

                                                                                                     tatggtTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAg                                 <  1:177905/140‑1 (MQ=255)

                                                                                                     tatggtTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAg                                 >  1:288894/1‑140 (MQ=255)

                                                                                                       tggtTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTc                               >  1:723891/1‑140 (MQ=255)

                                                                                                       tggtTAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTc                               >  2:1037123/1‑140 (MQ=255)

                                                                                                          ttAGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAg                            >  1:378853/1‑140 (MQ=255)

                                                                                                            aGTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGc                          <  1:385448/140‑1 (MQ=255)

                                                                                                             gTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGc                                    >  2:429746/1‑129 (MQ=255)

                                                                                                             gTTTTCTTTCCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCg                         >  1:99334/1‑140 (MQ=255)

                                                                                                                   tttcCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGtttt                   >  2:237374/1‑140 (MQ=255)

                                                                                                                   tttcCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGtttt                   <  2:520677/140‑1 (MQ=255)

                                                                                                                   tttcCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGtttt                   <  2:1067121/140‑1 (MQ=255)

                                                                                                                    ttcCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTg                  <  1:1217007/140‑1 (MQ=255)

                                                                                                                     tcCGGCAGCATTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGa                 <  1:45374/140‑1 (MQ=255)

                                                                                                                          cagcaTTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCTAGTCCAGGCGTGTTTTGAAGgtg            <  1:541552/140‑1 (MQ=255)

                                                                                                                          cagcaTTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGgtg            <  1:1111006/140‑1 (MQ=255)

                                                                                                                          cagcaTTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGgtg            <  1:859748/140‑1 (MQ=255)

                                                                                                                          cagcaTTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGgtg            <  2:1433869/140‑1 (MQ=255)

                                                                                                                           agcaTTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGgtgt           >  2:1342403/1‑140 (MQ=255)

                                                                                                                             caTTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTaa         <  1:1455906/140‑1 (MQ=255)

                                                                                                                              aTTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAAt        <  2:1600706/140‑1 (MQ=255)

                                                                                                                              aTTAATCACTTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAAt        <  2:246000/140‑1 (MQ=255)

                                                                                                                                    cactTAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTa  <  1:464409/140‑1 (MQ=255)

CACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTATGGTTAGTTTTCTTTCCGGCAGCATTAATCACATAGGATTCAGACTGGTTATGGCGTTCAGTCCACGCATCGGAATAGATGTATTCCGCGCCGAAGTAGGGTTGATGCGAAACATTACCCACGGCGAATTTTTGCCAGTCCAGGCGTGTTTTGAAGGTGTAATTATCTA  >  NC_000913/1576210‑1576481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A