Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 120 97.0 3206026 99.3% 3183583 140.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,597,313 (C)7→8 pseudogene (774/5422 nt) yneO ← AIDA‑I family autotransporter YneO

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,597,3061.C98.6% 258.4 / ‑3.2 69pseudogene (781/5422 nt)yneOAIDA‑I family autotransporter YneO
Reads supporting (aligned to +/- strand):  ref base . (1/0);  new base C (43/25);  total (44/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.57e-01

GAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGC  >  NC_000913/1597170‑1597440
                                                                                                                                         |                                                                                                                                       
gAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑ccc                                                                                                                                     >  2:1214667/1‑140 (MQ=255)
  aaTATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑ccccc                                                                                                                                   >  2:682852/1‑140 (MQ=255)
  aaTATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑ccccc                                                                                                                                   <  1:492713/140‑1 (MQ=255)
   atatTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑cccccc                                                                                                                                  <  1:758951/140‑1 (MQ=255)
    tatTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑ccccccc                                                                                                                                 <  1:519345/140‑1 (MQ=255)
     atTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑cccccccc                                                                                                                                >  1:622373/1‑139 (MQ=255)
     atTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑cccccccc                                                                                                                                >  2:786897/1‑139 (MQ=255)
     atTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑cccccccc                                                                                                                                >  1:1462296/1‑139 (MQ=255)
       tGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑cccccccctc                                                                                                                              >  2:211095/1‑137 (MQ=255)
         aCTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑cccccccctcgc                                                                                                                            <  2:542006/140‑6 (MQ=255)
         aCTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑cccccccctcgc                                                                                                                            >  1:1389973/1‑135 (MQ=255)
            gtgCCATTTCCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGaa                                                                                                                          <  1:984232/140‑1 (MQ=255)
            gtgCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGaa                                                                                                                          >  2:339918/1‑140 (MQ=255)
               ccATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAg                                                                                                                       >  1:1033422/1‑140 (MQ=255)
               ccATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAg                                                                                                                       >  2:1367888/1‑140 (MQ=255)
                cATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGt                                                                                                                      <  2:1389973/140‑1 (MQ=255)
                   tACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGc                                                                                                                   <  2:359518/140‑1 (MQ=255)
                   tACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGc                                                                                                                   <  1:207032/140‑1 (MQ=255)
                        aaaTATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTccc                                                                                                              <  1:440005/140‑1 (MQ=255)
                        aaaTATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTccc                                                                                                              <  1:1489162/140‑1 (MQ=255)
                             tCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGtt                                                                                                         >  2:1081647/1‑140 (MQ=255)
                                       agTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTAc                                                                                               >  2:283632/1‑140 (MQ=255)
                                       agTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTAc                                                                                               >  1:646029/1‑140 (MQ=255)
                                         tCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCa                                                                                             >  1:165877/1‑140 (MQ=255)
                                         tCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCa                                                                                             >  1:1458099/1‑140 (MQ=255)
                                           tGCGTACCGTGATGATAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAAt                                                                                           >  1:22318/1‑140 (MQ=255)
                                           tGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAAt                                                                                           >  2:6103/1‑140 (MQ=255)
                                            gCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAAtt                                                                                          >  2:1417350/1‑140 (MQ=255)
                                            gCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAAtt                                                                                          >  1:511848/1‑140 (MQ=255)
                                                          cAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGa                                                                            <  2:120168/140‑1 (MQ=255)
                                                             agTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAgg                                                                          <  2:364921/140‑1 (MQ=255)
                                                              gTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGaa                                                                        >  2:1491708/1‑140 (MQ=255)
                                                               tCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAAt                                                                       >  2:1308239/1‑140 (MQ=255)
                                                                   gATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCatt                                                                   >  1:353530/1‑140 (MQ=255)
                                                                    aTCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCatta                                                                  >  2:1485652/1‑140 (MQ=255)
                                                                      ccTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCattatt                                                                <  2:622373/140‑1 (MQ=255)
                                                                       cTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAttt                                                               >  1:1349576/1‑140 (MQ=255)
                                                                         gCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAttttt                                                             >  1:329572/1‑140 (MQ=255)
                                                                         gCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAttttt                                                             >  1:661839/1‑140 (MQ=255)
                                                                           acaTTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTtta                                                           >  1:1450180/1‑140 (MQ=255)
                                                                               tCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAg                                                       >  1:507351/1‑140 (MQ=255)
                                                                               tCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAg                                                       >  2:541768/1‑140 (MQ=255)
                                                                               tCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAg                                                       >  1:982924/1‑140 (MQ=255)
                                                                               tCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTAGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAg                                                       >  2:992136/1‑140 (MQ=255)
                                                                                cAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGc                                                      <  1:786897/140‑1 (MQ=255)
                                                                                 aGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGcc                                                     <  1:682852/140‑1 (MQ=255)
                                                                                 aGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGcc                                                     <  1:339918/140‑1 (MQ=255)
                                                                                 aGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCa                                                    >  2:5485/1‑140 (MQ=255)
                                                                                       ccGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGc                                               >  1:983719/1‑140 (MQ=255)
                                                                                       ccGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGc                                               >  1:565040/1‑140 (MQ=255)
                                                                                         gATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCa                                             <  2:525405/140‑1 (MQ=255)
                                                                                             ccGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCAccc                                          >  1:1529971/1‑140 (MQ=255)
                                                                                             ccGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCt                                         >  2:1158344/1‑140 (MQ=255)
                                                                                                gTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCtttt                                      >  1:1231264/1‑140 (MQ=255)
                                                                                                  ggCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCa                                    >  1:1920/1‑140 (MQ=255)
                                                                                                  ggCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCa                                    >  1:1230988/1‑140 (MQ=255)
                                                                                                  ggCATTGCCACCGATAATCGTATTTTCAGCCGAAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCa                                    >  2:1225132/1‑140 (MQ=255)
                                                                                                     aTTGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACg                                 <  1:1494868/140‑1 (MQ=255)
                                                                                                      ttGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGa                                <  1:211095/140‑1 (MQ=255)
                                                                                                      ttGCCACCGATAATCGTATTCTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGa                                <  1:39526/140‑1 (MQ=255)
                                                                                                       tGCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGAc                               >  1:1172544/1‑140 (MQ=255)
                                                                                                        gCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACa                              >  2:44670/1‑140 (MQ=255)
                                                                                                        gCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACa                              >  2:1523119/1‑140 (MQ=255)
                                                                                                        gCCACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACaa                             >  1:855485/1‑140 (MQ=255)
                                                                                                          cACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc                            <  1:1214667/140‑1 (MQ=255)
                                                                                                          cACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc                            <  1:92513/140‑1 (MQ=255)
                                                                                                          cACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc                            <  2:329572/140‑1 (MQ=255)
                                                                                                          cACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc                            <  1:283632/140‑1 (MQ=255)
                                                                                                          cACCGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc                            <  1:1308239/140‑1 (MQ=255)
                                                                                                             cGATAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTg                         >  1:543398/1‑140 (MQ=255)
                                                                                                               aTAATCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGc                       >  1:40374/1‑140 (MQ=255)
                                                                                                                 aaTCGTATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCa                     >  2:253724/1‑140 (MQ=255)
                                                                                                                      tATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACt                >  2:1432545/1‑140 (MQ=255)
                                                                                                                      tATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACt                <  1:1249276/140‑1 (MQ=255)
                                                                                                                      tATTTTCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACt                >  2:267774/1‑140 (MQ=255)
                                                                                                                         tttCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGcc             >  2:1470679/1‑140 (MQ=255)
                                                                                                                         tttCAGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGcc             <  1:872873/140‑1 (MQ=255)
                                                                                                                             aGCCGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGcc         >  1:564902/1‑140 (MQ=255)
                                                                                                                               ccGTAACCAAC‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTg       <  1:1491708/140‑1 (MQ=255)
                                                                                                                                cGTAACCAAC‑CCCCCCCTCGCTAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGa      <  2:1462296/140‑1 (MQ=255)
                                                                                                                                    accaac‑cCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGc  >  1:238706/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
GAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑CCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGC  >  NC_000913/1597170‑1597440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A