Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 120 97.0 3206026 99.3% 3183583 140.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,239,585 A→G V255A (GTG→GCG)  mglB ← D‑galactose/methyl‑galactoside ABC transporter periplasmic binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,239,5850AG100.0% 362.8 / NA 94V255A (GTG→GCG) mglBD‑galactose/methyl‑galactoside ABC transporter periplasmic binding protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (56/38);  total (56/38)

CACCTTTACCATCGGCCAGGTTTTTCGCCAGATCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACACCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGTCCATCTTATCTTTCGCCTG  >  NC_000913/2239448‑2239721
                                                                                                                                         |                                                                                                                                        
cACCTTTACCATCGGCCAGGTTTTTCGCCAGATCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGcc                                                                                                                                        >  2:1129519/1‑140 (MQ=255)
cACCTTTACCATCGGCCAGGTTTTTCGCCAGATCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGcc                                                                                                                                        >  2:1520485/1‑140 (MQ=255)
 ccttttCCCATCGGCCGGTTTTTTCGCCAGATAAAGGGTCGTTTTCGCGTGGTTGTAAGCATCGTTCAGTGGGGGGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCg                                                                                                                                       <  2:351417/137‑1 (MQ=255)
 ccttttCCCATCGGCAAGGTTTTTCGCCAGAACAAGGGTCGCTTTCGCCTGGTTGTTACCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCg                                                                                                                                       <  1:1376312/137‑1 (MQ=255)
 cccTTTACCATGGGCCATTTTTTGCGCCAGACCAAAGGCCGCTTTCCCCTGGTTGTAAGCATCGTTCAGTACGGGGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCg                                                                                                                                       <  2:1394123/139‑1 (MQ=255)
     ttACCATCGGCCAGGTTTTTCGCCAGATCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAAt                                                                                                                                   >  2:881050/1‑140 (MQ=255)
       cccATCGGCCGGGTTTTTCGCCAGATCAAAGGTCGTTTCCCCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGc                                                                                                                                 <  2:1495703/139‑1 (MQ=255)
           tCGGCCAGGTTTTTCGCCAGATCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGa                                                                                                                             >  2:362306/1‑140 (MQ=255)
            cGGCCAGGTTTTTCGCCAGATCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGAc                                                                                                                            >  2:800263/1‑140 (MQ=255)
            cGGCCAGGTTTTTCGCCAGATCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGAc                                                                                                                            <  2:406784/140‑1 (MQ=255)
             ggCCAGGTTTTTCGCCAGATCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACt                                                                                                                           >  1:1254270/1‑140 (MQ=255)
             ggCCAGGTTTTTCGCCAGATCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACt                                                                                                                           >  1:1590283/1‑140 (MQ=255)
               ccAGGTTTTTCGCCAGATCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACttg                                                                                                                         >  1:200175/1‑140 (MQ=255)
                cgggTTTTTCCCCAAAAAAAAGGTCGCTTCCGCCTGGTTGTTAGCATCGTTCAGTCCGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACttgt                                                                                                                        <  2:125850/138‑1 (MQ=255)
                  ggTTTTTCGCCAGATCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACttgttg                                                                                                                      >  1:1130218/1‑140 (MQ=255)
                  ggTTTTTCGCCAGATCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACttgttg                                                                                                                      >  1:1160734/1‑140 (MQ=255)
                      ttccGCCAGATAAAAGGCCGCTCTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTtgtgtg                                                                                                                  <  2:55959/137‑1 (MQ=255)
                           ccAGAACAAGGGTCGTTTTCGCCTGTTTGTGATCATTTTTCAGTACGTCGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTc                                                                                                             <  1:323289/140‑1 (MQ=255)
                           caaGACCAAGGGCCGTTTTCGCCTGGTTGTTAGCATCGTCCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTc                                                                                                             <  2:1004028/138‑1 (MQ=255)
                               aTCAAGGGTCGCTTTCGCCGGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAgcg                                                                                                         <  1:484720/140‑1 (MQ=255)
                               aTCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAgcg                                                                                                         >  1:869022/1‑140 (MQ=255)
                                  aagggTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCtt                                                                                                      <  2:534550/137‑1 (MQ=255)
                                   aaGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTc                                                                                                     >  1:714314/1‑140 (MQ=255)
                                        cGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACcg                                                                                                >  1:74557/1‑140 (MQ=255)
                                        cGCTTGCGCCTGGTTGTTAGAGTCTTTCAAAAGGGGCCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACcg                                                                                                <  2:585510/140‑1 (MQ=255)
                                         gCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACcgc                                                                                               >  1:1487956/1‑140 (MQ=255)
                                          ttttCGCCGGGTTGTTAGCATCGTTCAGTGGGGGGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACcgcg                                                                                              <  2:954187/139‑1 (MQ=255)
                                          cTTTCGCTTGTTTGTTAGCACCGTTCAGTACGTTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACcgcg                                                                                              <  2:523612/140‑1 (MQ=255)
                                          cTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACcgcg                                                                                              >  1:177814/1‑140 (MQ=255)
                                          cTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACcgcg                                                                                              >  1:1002796/1‑140 (MQ=255)
                                              cGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCa                                                                                          >  2:673102/1‑140 (MQ=255)
                                                    tttgttAGCATCGTCCAGTCCGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCca                                                                                    <  2:1556417/139‑1 (MQ=255)
                                                     ttgttAGCATCGTTCAGTCCGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCcat                                                                                   <  1:270455/140‑1 (MQ=255)
                                                         tAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCcatcgca                                                                               <  2:1561709/140‑1 (MQ=255)
                                                          aGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCcatcgcat                                                                              >  1:311315/1‑140 (MQ=255)
                                                           gCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCcatcgcatc                                                                             >  2:553298/1‑140 (MQ=255)
                                                            cATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCcatcgcatcg                                                                            <  2:1250085/140‑1 (MQ=255)
                                                              tCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCgtt                                                                          >  2:839099/1‑140 (MQ=255)
                                                              tCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCgtt                                                                          >  1:1555867/1‑140 (MQ=255)
                                                              tCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCgtt                                                                          >  2:1377170/1‑140 (MQ=255)
                                                              tCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCgtt                                                                          >  2:828278/1‑140 (MQ=255)
                                                               cGTTCAGTAGGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCgttg                                                                         <  2:1140640/140‑1 (MQ=255)
                                                               cGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCgttg                                                                         >  2:156466/1‑140 (MQ=255)
                                                               cGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCgttg                                                                         <  1:335688/140‑1 (MQ=255)
                                                               cGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCgttg                                                                         >  2:1005522/1‑140 (MQ=255)
                                                               cGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCgttg                                                                         >  2:662808/1‑140 (MQ=255)
                                                                gTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCgttgt                                                                        <  2:405578/140‑1 (MQ=255)
                                                                 ttCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCgttgtt                                                                       >  2:705990/1‑140 (MQ=255)
                                                                 ttCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCgttgtt                                                                       >  2:104040/1‑140 (MQ=255)
                                                                    aGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGc                                                                    >  1:625184/1‑140 (MQ=255)
                                                                         ggTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATaa                                                               >  2:1142402/1‑140 (MQ=255)
                                                                         ggTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATaa                                                               >  1:1278356/1‑140 (MQ=255)
                                                                          gTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAACGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAAc                                                              <  1:60676/140‑1 (MQ=255)
                                                                           tGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAAcc                                                             >  2:65930/1‑140 (MQ=255)
                                                                           tGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAAcc                                                             >  1:285818/1‑140 (MQ=255)
                                                                           tGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAAcc                                                             >  2:755142/1‑140 (MQ=255)
                                                                           tGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAAcc                                                             >  2:100880/1‑140 (MQ=255)
                                                                           tGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAAcc                                                             >  1:759693/1‑140 (MQ=255)
                                                                           tGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAAcc                                                             >  2:1551697/1‑140 (MQ=255)
                                                                             cccGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCAc                                                           >  2:1433554/1‑140 (MQ=255)
                                                                             cccGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCAc                                                           >  1:707581/1‑140 (MQ=255)
                                                                                gCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTc                                                        >  2:463768/1‑140 (MQ=255)
                                                                                gCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTc                                                        >  1:171844/1‑140 (MQ=255)
                                                                                gCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTc                                                        >  1:1433724/1‑140 (MQ=255)
                                                                                gCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTc                                                        >  1:688979/1‑140 (MQ=255)
                                                                                     tGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGAttt                                                   >  2:1562554/1‑140 (MQ=255)
                                                                                         ccGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTttgtt                                               <  2:1590283/140‑1 (MQ=255)
                                                                                          cGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTttgttg                                              <  1:1166572/140‑1 (MQ=255)
                                                                                          cGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTttgttg                                              <  2:1216887/140‑1 (MQ=255)
                                                                                            gATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGc                                            >  1:1323804/1‑140 (MQ=255)
                                                                                              tttCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGt                                          <  2:864803/140‑1 (MQ=255)
                                                                                               ttCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGtt                                         >  2:571392/1‑140 (MQ=255)
                                                                                                tCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTc                                        <  1:1289223/140‑1 (MQ=255)
                                                                                                    cagcgccagcgcTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGc                                    >  2:936570/1‑140 (MQ=255)
                                                                                                      gcgccagcgcTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCa                                  >  2:1343934/1‑140 (MQ=255)
                                                                                                       cgccagcgcTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAg                                 >  2:1436954/1‑140 (MQ=255)
                                                                                                           agcgcTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAg                             >  2:1243574/1‑140 (MQ=255)
                                                                                                            gcgcTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGc                            <  2:285818/140‑1 (MQ=255)
                                                                                                             cgcTTCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGcc                           <  1:1494481/140‑1 (MQ=255)
                                                                                                                ttCTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAgg                        <  2:200175/140‑1 (MQ=255)
                                                                                                                  cTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCg                      >  2:347903/1‑140 (MQ=255)
                                                                                                                  cTGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCg                      <  1:65930/140‑1 (MQ=255)
                                                                                                                   tGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGt                     <  1:103497/140‑1 (MQ=255)
                                                                                                                   tGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGt                     <  2:1386461/140‑1 (MQ=255)
                                                                                                                   tGGCAGCGCATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGt                     <  1:1553379/140‑1 (MQ=255)
                                                                                                                         cgcATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGTCCatct               >  2:328177/1‑140 (MQ=255)
                                                                                                                         cgcATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGTCCatct               <  2:999876/140‑1 (MQ=255)
                                                                                                                          gcATCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGTCCatctt              >  1:756061/1‑140 (MQ=255)
                                                                                                                            aTCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGTCCatcttat            >  2:1521022/1‑140 (MQ=255)
                                                                                                                            aTCGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGTCCatcttat            >  1:386389/1‑140 (MQ=255)
                                                                                                                              cGACGCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGTCCatcttatct          <  2:1262058/140‑1 (MQ=255)
                                                                                                                                gcGCCAAACGCCGGAATGCTGGCCTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGTCCATCTTATCttt        <  2:1403614/139‑1 (MQ=255)
                                                                                                                                  gCCAAACGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGTGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGTCCATCTTATCTTTCg      >  1:90969/1‑140 (MQ=255)
                                                                                                                                     aaaCGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGTCCATCTTATCTTTCGCCt   <  2:492593/140‑1 (MQ=255)
                                                                                                                                      aaCGCCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGTCCATCTTATCTTTCGCCTg  <  1:662808/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
CACCTTTACCATCGGCCAGGTTTTTCGCCAGATCAAAGGTCGCTTTCGCCTGGTTGTTAGCATCGTTCAGTACGGTGCCCGCCAGTGCACCGGATTTCACCAGCGCCAGCGCTTCTGGCAGCGCATCGACGCCAAACACCGGAATGCTGGACTTGTTGTGTGCTTTCAGCGCTTCAACCGCGCCCATTGCCATCGCATCGTTGTTGGCGATAACCACTTCGATTTTGTTGGCGTTCGGGCCAGACAGCCAGGCGTCCATCTTATCTTTCGCCTG  >  NC_000913/2239448‑2239721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A