Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F28 I1 R1	120	97.0	3206026	99.3%	3183583	140.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,830,382	A→G	A190A (GCA→GCG)	gutQ →	D‑arabinose 5‑phosphate isomerase GutQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,830,382	0	A	G	100.0%	247.3 / NA	69	A190A (GCA→GCG)	gutQ	D‑arabinose 5‑phosphate isomerase GutQ
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (27/42); total (27/42)

AAGCCTGCCCGATGCACCTTGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCACTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCACCGGTCTGGGGCTGGTGGCG  >  NC_000913/2830246‑2830514

aaGCCTGCCCGATGCACCTTGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTg                                                                                                                                   <  1:519771/140‑1 (MQ=255)

 aGCCTGCCCGATGCACCTTGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTgg                                                                                                                                  >  1:458008/1‑140 (MQ=255)

       cccGATGCACCTTGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGcgctc                                                                                                                            >  1:809438/1‑140 (MQ=255)

         cGATGCACCTTGCGCCGGCCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGcgctcgc                                                                                                                          <  1:1328215/140‑1 (MQ=255)

         cGATGCACCTTGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGcgctcgc                                                                                                                          <  1:235942/140‑1 (MQ=255)

         cGATGCACCTTGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGcgctcgc                                                                                                                          <  1:824820/140‑1 (MQ=255)

           aTGCACCTTGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCtt                                                                                                                        <  2:1060255/140‑1 (MQ=255)

            tGCACCTTGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTg                                                                                                                       >  1:516960/1‑140 (MQ=255)

            tGCACCTTGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTg                                                                                                                       <  2:732016/140‑1 (MQ=255)

            tGCACCTTGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTg                                                                                                                       >  2:218782/1‑140 (MQ=255)

                ccTTGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGa                                                                                                                   <  1:485326/140‑1 (MQ=255)

                 cTTGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGaa                                                                                                                  >  1:607638/1‑140 (MQ=255)

                   tGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATa                                                                                                                >  2:355186/1‑140 (MQ=255)

                   tGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATa                                                                                                                <  2:570176/140‑1 (MQ=255)

                    gcgcCGACCTCCAGCACCGGCAATTCCCGGAAGATGGGGGGCGCTCTGGCGATGGGGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATaa                                                                                                               <  2:1224527/140‑1 (MQ=255)

                      gcCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAg                                                                                                             <  2:1231687/140‑1 (MQ=255)

                          aCCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGca                                                                                                         <  1:756445/140‑1 (MQ=255)

                                      gTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATgcg                                                                                             >  2:1140635/1‑140 (MQ=255)

                                       tCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATgcgc                                                                                            >  2:594936/1‑140 (MQ=255)

                                       tCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATgcgc                                                                                            >  2:127218/1‑140 (MQ=255)

                                            aCCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGa                                                                                       <  1:859758/140‑1 (MQ=255)

                                               cTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGa                                                                                    <  2:690494/140‑1 (MQ=255)

                                               cTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGa                                                                                    <  2:39442/140‑1 (MQ=255)

                                                tgatgaTGGGCGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGAt                                                                                   >  2:1198521/1‑140 (MQ=255)

                                                  atgatgGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGc                                                                                 <  1:797284/140‑1 (MQ=255)

                                                  atgatgGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGc                                                                                 <  1:886821/140‑1 (MQ=255)

                                                  atgatgGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGc                                                                                 >  2:36190/1‑140 (MQ=255)

                                                  atgatgGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGc                                                                                 >  1:248026/1‑140 (MQ=255)

                                                   tgatgGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCACCTGATGCGCCGTGACGATGcc                                                                                <  2:654824/140‑1 (MQ=255)

                                                     atgGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCAt                                                                              <  2:791159/140‑1 (MQ=255)

                                                       gggTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATcc                                                                            >  1:275612/1‑140 (MQ=255)

                                                        ggTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATccc                                                                           >  2:365508/1‑140 (MQ=255)

                                                          tGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATTCcac                                                                         >  2:390349/1‑140 (MQ=255)

                                                            aCGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAg                                                                       <  1:153163/140‑1 (MQ=255)

                                                            aCGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAg                                                                       >  1:1509656/1‑140 (MQ=255)

                                                            aCGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAg                                                                       >  1:506484/1‑140 (MQ=255)

                                                            aCGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAg                                                                       >  2:1174432/1‑140 (MQ=255)

                                                              gcgcTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGt                                                                     <  1:1351451/140‑1 (MQ=255)

                                                              gcgcTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGt                                                                     <  2:614652/140‑1 (MQ=255)

                                                                gcTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTgg                                                                   <  2:49428/140‑1 (MQ=255)

                                                                         ggCGGTCATGCAGGGGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGGGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCg                                                          <  2:642037/140‑1 (MQ=255)

                                                                         ggCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGTCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCg                                                          >  1:369755/1‑140 (MQ=255)

                                                                           cGGTCATGGGGGCGCGGGGATTTAATGAAGAAGATTTTGCCCGCTCCCCCCCGGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCTTCCCACAGGTGGCGTTAACCGcc                                                        <  2:143595/140‑1 (MQ=255)

                                                                            ggTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCCCCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCa                                                       <  2:1479285/140‑1 (MQ=255)

                                                                              tCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGc                                                     >  1:980278/1‑140 (MQ=255)

                                                                                 tGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCCCCCCCCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTg                                                  <  1:1571245/140‑1 (MQ=255)

                                                                                       cgcgcgGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTgatggat                                            >  1:1307195/1‑140 (MQ=255)

                                                                                        gcgcgGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTgatggatg                                           >  1:769449/1‑140 (MQ=255)

                                                                                          gcgGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGgatgcg                                         <  1:737636/140‑1 (MQ=255)

                                                                                          gcgGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGgatgcg                                         <  1:218782/140‑1 (MQ=255)

                                                                                           gggATTTAATGAAGAAGATTTTGCCCGCCCCCACCCAGCGGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGGGGCGTTAACCGCCAGCGTGATGgatgcga                                        <  2:64374/139‑1 (MQ=255)

                                                                                              aTTTAATGAAGAAGATTTTGCCCGCTCCCCCCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCGGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGgatgcgatgc                                     <  2:607638/140‑1 (MQ=255)

                                                                                              aTTTAATGAAGAAGATTTTCCCCGCCCCCCCCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGgatgcgatgc                                     <  2:1509656/140‑1 (MQ=255)

                                                                                                   aTGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGaa                                <  1:127218/140‑1 (MQ=255)

                                                                                                        gaagaTTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGTGATGCTGGAACTCAg                           >  1:1096997/1‑140 (MQ=255)

                                                                                                        gaagaTTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAg                           >  2:676608/1‑140 (MQ=255)

                                                                                                        gaagaTTTTGCCCGCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAg                           >  2:1061033/1‑140 (MQ=255)

                                                                                                         aagaTTTGCCCCGCCCCCGCCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCGGGGACGATGCCACCCCACGGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGc                          <  2:87380/140‑1 (MQ=255)

                                                                                                             ttttGCCCGCTCCCCCCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCa                      <  1:594936/140‑1 (MQ=255)

                                                                                                             ttttGCCCGCTCCCCCCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCa                      <  1:390349/140‑1 (MQ=255)

                                                                                                             ttttGCCCGCTCCCCCCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCa                      <  1:299463/140‑1 (MQ=255)

                                                                                                             tttgGCCCGTTCCCACCCGGCGGGGGCTTTGGGCGCTCGCTTGCTGAATAAAGTACATGTTCGGATGCGCCGTGGCGAGCCCACCCCCCGGGTGGCTTAAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCa                      <  2:333028/140‑1 (MQ=255)

                                                                                                              tttGCCCGCTCCCCCCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCAc                     <  2:516960/140‑1 (MQ=255)

                                                                                                              tttGCCCGCTCCCCCCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCAc                     <  1:1140635/140‑1 (MQ=255)

                                                                                                              tttGCCCGCCCCCCCCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCACCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCAc                     <  2:161462/140‑1 (MQ=255)

                                                                                                                     gCTCCCACCCAGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCACCGGTCTg              >  2:1481335/1‑140 (MQ=255)

                                                                                                                            cccaGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCACCGGTCTGGGGCtgg       <  1:915722/140‑1 (MQ=255)

                                                                                                                            cccaGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCACCGGTCTGGGGCtgg       <  1:355186/140‑1 (MQ=255)

                                                                                                                             ccaGCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCACCGGTCTGGGGCtggt      <  1:36190/140‑1 (MQ=255)

                                                                                                                               ggCCGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCGGATGCGCCGTGGGGATGCCCCCCGCCGGGCGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCACCGGTCTGGGGCtggtgg    <  2:542552/139‑1 (MQ=255)

                                                                                                                                 ccGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCAGAGGGGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCACCGGTCTGGGGCTGGTGGCg  <  2:1079297/140‑1 (MQ=255)

                                                                                                                                 ccGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCACCGGTCTGGGGCTGGTGGCg  >  1:1422684/1‑140 (MQ=255)

                                                                                                                                 ccGGGGCGCTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGGGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCACCGGTCTGGGGCTGGTGGCg  <  2:458008/140‑1 (MQ=255)

AAGCCTGCCCGATGCACCTTGCGCCGACCTCCAGCACCGTCAATACCCTGATGATGGGTGACGCGCTGGCGATGGCGGTCATGCAGGCGCGCGGATTTAATGAAGAAGATTTTGCCCGCTCCCACCCAGCCGGGGCACTGGGCGCTCGCTTGCTGAATAAAGTGCATCATCTGATGCGCCGTGACGATGCCATCCCACAGGTGGCGTTAACCGCCAGCGTGATGGATGCGATGCTGGAACTCAGCCGCACCGGTCTGGGGCTGGTGGCG  >  NC_000913/2830246‑2830514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A