Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 134 60.5 2175152 94.0% 2044642 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,764,538 G→A R206C (CGC→TGC)  abpA ← CP4‑57 prophage; anti‑bacteriophage protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,764,5380GA100.0% 267.5 / NA 75R206C (CGC→TGC) abpACP4‑57 prophage; anti‑bacteriophage protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (36/39);  total (36/39)

GACCGAGATTGGTCATCTTCGACACGCTGCTTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCGGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAGGGATGAAAACACTTCCCATGTAGCCGCATC  >  NC_000913/2764408‑2764673
                                                                                                                                  |                                                                                                                                       
gACCGAGATTGGTCATCTTCGACACGCTGCTTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAAt                                                                                                                                <  2:998944/140‑1 (MQ=255)
           gTCATCTTCGACACGCTGCTTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGa                                                                                                                     >  2:406610/1‑140 (MQ=255)
           gTCATCTTCGACACGCTGCTTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGa                                                                                                                     >  2:581704/1‑140 (MQ=255)
                cTTCGACACGCTGCTTGAACCACTCAAGTAGGTCTGGTCGTAAGTAAGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGtt                                                                                                                >  2:866581/1‑140 (MQ=255)
                 ttCGACACGCTGCTTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGttt                                                                                                               >  1:23947/1‑140 (MQ=255)
                   cGACACGCTGCTTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCg                                                                                                             <  2:944371/140‑1 (MQ=255)
                   cGACACGCTGCTTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCg                                                                                                             <  1:573681/140‑1 (MQ=255)
                   cGACACGCTGCTTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCg                                                                                                             <  2:8977/140‑1 (MQ=255)
                    gACACGCTGCTTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCgg                                                                                                            <  1:478957/140‑1 (MQ=255)
                         gctgctTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTg                                                                                                       <  1:640885/140‑1 (MQ=255)
                          ctgctTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTga                                                                                                      >  2:409997/1‑140 (MQ=255)
                           tgctTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTgag                                                                                                     >  2:392769/1‑140 (MQ=255)
                           tgctTGAACCACTCAAGTAGGTCT‑GTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTgaga                                                                                                    >  1:302719/1‑140 (MQ=255)
                             ctTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGaa                                                                                                   >  1:997336/1‑140 (MQ=255)
                             ctTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGaa                                                                                                   <  1:678170/140‑1 (MQ=255)
                             ctTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGaa                                                                                                   >  2:271375/1‑140 (MQ=255)
                             ctTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCACTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGaa                                                                                                   >  2:278248/1‑140 (MQ=255)
                                 aaCCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAc                                                                                               <  1:820772/140‑1 (MQ=255)
                                 aaCCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAc                                                                                               <  1:406610/140‑1 (MQ=255)
                                 aaCCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAc                                                                                               <  2:936947/140‑1 (MQ=255)
                                 aaCCACTCAAGTAGGTCT‑GTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAcc                                                                                              <  2:302719/140‑1 (MQ=255)
                                  aCCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAcc                                                                                              <  2:275067/140‑1 (MQ=255)
                                  aCCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAcc                                                                                              <  1:409997/140‑1 (MQ=255)
                                  aCCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAcc                                                                                              <  2:122573/140‑1 (MQ=255)
                                  aCCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAcc                                                                                              <  1:974306/140‑1 (MQ=255)
                                  aCCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGACGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAcc                                                                                              <  2:935584/140‑1 (MQ=255)
                                     aCTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCa                                                                                           >  2:703991/1‑140 (MQ=255)
                                       tCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACt                                                                                                        >  2:1016597/1‑125 (MQ=255)
                                       tCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACt                                                                                                        <  1:1016597/125‑1 (MQ=255)
                                       tCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAc                                                                                               <  1:312646/134‑1 (MQ=255)
                                       tCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAc                                                                                               >  2:312646/1‑134 (MQ=255)
                                       tCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATg                                                                                         <  1:271375/140‑1 (MQ=255)
                                                tCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAc                                                                                               <  2:985977/125‑1 (MQ=255)
                                                tCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAc                                                                                               >  1:985977/1‑125 (MQ=255)
                                                 cTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTgg                                                                               >  1:1001651/1‑140 (MQ=255)
                                                   ggTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAcc                                                                                              >  1:198946/1‑123 (MQ=255)
                                                   ggTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGAcc                                                                                              <  2:198946/123‑1 (MQ=255)
                                                   ggTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGa                                                                             >  2:349392/1‑140 (MQ=255)
                                                   ggTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGa                                                                             <  2:23947/140‑1 (MQ=255)
                                                   ggTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGa                                                                             >  2:212222/1‑140 (MQ=255)
                                                    gTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAg                                                                            >  2:76129/1‑140 (MQ=255)
                                                     tCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATg                                                                                         >  1:751639/1‑126 (MQ=255)
                                                     tCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATg                                                                                         <  2:751639/126‑1 (MQ=255)
                                                     tCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAgg                                                                           >  1:556163/1‑140 (MQ=255)
                                                      cGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGc                                                                          <  1:175902/140‑1 (MQ=255)
                                                         aaGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAg                                                                       <  1:392769/140‑1 (MQ=255)
                                                         aaGTAAGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAg                                                                       <  1:866581/140‑1 (MQ=255)
                                                              ggACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTa                                                                  <  1:212222/140‑1 (MQ=255)
                                                              ggACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTa                                                                  <  2:1001651/140‑1 (MQ=255)
                                                               gACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTAt                                                                 <  2:997336/140‑1 (MQ=255)
                                                               gACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTAt                                                                 <  1:76129/140‑1 (MQ=255)
                                                                   tGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGc                                                                          <  1:749042/127‑1 (MQ=255)
                                                                   tGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGc                                                                          >  2:749042/1‑127 (MQ=255)
                                                                         caGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATc                                                       >  2:771917/1‑140 (MQ=255)
                                                                               tgtgAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGa                                                 >  1:216889/1‑140 (MQ=255)
                                                                               tgtgAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGa                                                 >  1:841204/1‑140 (MQ=255)
                                                                                 tgAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAg                                               >  2:939435/1‑140 (MQ=255)
                                                                                      gCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCttt                                                          >  1:571262/1‑123 (MQ=255)
                                                                                      gCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCttt                                                          <  2:571262/124‑2 (MQ=255)
                                                                                      gCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCa                                          >  1:692641/1‑140 (MQ=255)
                                                                                        gTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGt                                        <  1:35018/140‑1 (MQ=255)
                                                                                         tCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGtt                                       >  1:183150/1‑140 (MQ=255)
                                                                                         tCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGtt                                       >  1:53781/1‑140 (MQ=255)
                                                                                                 gCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAgg                               <  1:581704/140‑1 (MQ=255)
                                                                                                 gCTCGCCCTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAgg                               <  2:183150/140‑1 (MQ=255)
                                                                                                      cccTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAGGGATGa                          <  2:35336/140‑1 (MQ=255)
                                                                                                      cccTTGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAGGGATGa                          >  2:54157/1‑140 (MQ=255)
                                                                                                         ttGCGCGTCACAGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAGGGATGaaaa                       <  1:54157/140‑1 (MQ=255)
                                                                                                                 cacaGTATCAAGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAGGGATGAAAACACTTccc               >  1:485549/1‑140 (MQ=255)
                                                                                                                           aGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAGGGATGAAAACACTTCCCATGTAGCCGc     >  1:723308/1‑140 (MQ=255)
                                                                                                                           aGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAGGGATGAAAACACTTCCCATGTAGCCGc     >  1:451816/1‑140 (MQ=255)
                                                                                                                           aGGATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGACCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAGGGATGAAAACACTTCCCATGTAGCCGc     >  1:365326/1‑140 (MQ=255)
                                                                                                                            ggATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAGGGATGAAAACACTTCCCATGTAGCCGCa    <  1:771917/140‑1 (MQ=255)
                                                                                                                             gATGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAGGGATGAAAACACTTCCCATGTAGCCGCAt   <  2:556163/140‑1 (MQ=255)
                                                                                                                              aTGCAGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAGGGATGAAAACACTTCCCATGTAGCCGCATc  >  2:452976/1‑140 (MQ=255)
                                                                                                                                  |                                                                                                                                       
GACCGAGATTGGTCATCTTCGACACGCTGCTTGAACCACTCAAGTAGGTCTGGTCGTAAGTAGGACTTGTCATCAGCACTGTGAATGCGTCGAGAATGCTCGCCCTTGCGCGTCACAGTATCAAGGATGCGGCACCAAATGTCTTCGGCGACGGTTTCGGAACTGAGAATGACCCCATGTAGATCTTGGGAGGCCAGCCGTATGTTCTTGATCCCTAGAAGTTCCAGTTCGCGCAGGGATGAAAACACTTCCCATGTAGCCGCATC  >  NC_000913/2764408‑2764673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A