Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F28 I1 R1	116	98.7	3298914	99.2%	3272522	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,537,596	T→C	T420A (ACC→GCC)	narY ←	nitrate reductase Z subunit beta

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,537,596	0	T	C	100.0%	273.5 / NA	72	T420A (ACC→GCC)	narY	nitrate reductase Z subunit beta
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (35/37); total (35/37)

ATTTCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCAGGCTTTCGATGGCGGGCAGCACGC  >  NC_000913/1537460‑1537730

aTTTCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTtg                                                                                                                                     <  2:957340/140‑1 (MQ=255)

aTTTCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTtg                                                                                                                                     <  2:697140/140‑1 (MQ=255)

aTTTCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTtg                                                                                                                                     <  2:717422/140‑1 (MQ=255)

  ttCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTtgtg                                                                                                                                   <  1:863963/140‑1 (MQ=255)

  ttCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTtgtg                                                                                                                                   <  1:1021094/140‑1 (MQ=255)

  ttCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTtgtg                                                                                                                                   <  2:568823/140‑1 (MQ=255)

  ttCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTtgtg                                                                                                                                   <  1:1154822/140‑1 (MQ=255)

  ttCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTtgtg                                                                                                                                   <  1:1542381/140‑1 (MQ=255)

  ctCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTtgtg                                                                                                                                   <  1:1462138/139‑1 (MQ=255)

   tCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGa                                                                                                                                  <  2:1286961/140‑1 (MQ=255)

   tCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGa                                                                                                                                  <  2:691673/140‑1 (MQ=255)

   tCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGa                                                                                                                                  <  1:1087258/140‑1 (MQ=255)

       gATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGc                                                                                                                              <  1:730360/140‑1 (MQ=255)

       gATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCACTAACGCCTTCCACGGCTTGTGAACGc                                                                                                                              <  2:1368769/140‑1 (MQ=255)

        aTGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCa                                                                                                                             <  1:1514935/140‑1 (MQ=255)

                    gATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCa                                                                                                                 <  2:887751/140‑1 (MQ=255)

                    gATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCa                                                                                                                 <  1:265835/140‑1 (MQ=255)

                         cAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGcc                                                                                                            >  1:792639/1‑140 (MQ=255)

                              cGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCcatcat                                                                                                       >  2:895008/1‑140 (MQ=255)

                                   ttCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGtt                                                                                                  >  2:773836/1‑140 (MQ=255)

                                        aGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAgc                                                                                             <  2:1276825/140‑1 (MQ=255)

                                           tGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGcc                                                                                          <  2:1429066/140‑1 (MQ=255)

                                            ggCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGccc                                                                                         >  1:1100791/1‑140 (MQ=255)

                                            ggCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGccc                                                                                         >  1:873345/1‑140 (MQ=255)

                                            ggCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGccc                                                                                         >  1:528181/1‑140 (MQ=255)

                                            ggCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGccc                                                                                         >  1:561171/1‑140 (MQ=255)

                                             gCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCg                                                                                        <  2:1389176/140‑1 (MQ=255)

                                             gCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCg                                                                                        <  1:988856/140‑1 (MQ=255)

                                                 tGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGt                                                                                    >  1:1455534/1‑140 (MQ=255)

                                                   gCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTac                                                                                  <  2:1619668/140‑1 (MQ=255)

                                                    cGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTacc                                                                                 >  2:191039/1‑140 (MQ=255)

                                                      agaTAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTaccgg                                                                               <  1:41607/140‑1 (MQ=255)

                                                       gaTAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTaccgga                                                                              >  1:423726/1‑140 (MQ=255)

                                                         tAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTaccggacc                                                                            <  1:488863/140‑1 (MQ=255)

                                                                aCATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCg                                                                     >  2:999730/1‑140 (MQ=255)

                                                                 cATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGc                                                                    >  1:66117/1‑140 (MQ=255)

                                                                     tctTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGc                                                                <  2:407660/140‑1 (MQ=255)

                                                                      ctTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCa                                                               >  1:264944/1‑140 (MQ=255)

                                                                      ctTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCa                                                               <  1:1531369/140‑1 (MQ=255)

                                                                           aCCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCaa                                                          >  2:135802/1‑140 (MQ=255)

                                                                              tGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACat                                                       >  1:995566/1‑140 (MQ=255)

                                                                               gggCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACata                                                      >  1:247832/1‑140 (MQ=255)

                                                                               gggCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACata                                                      >  1:155372/1‑140 (MQ=255)

                                                                               gggCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACata                                                      >  1:870666/1‑140 (MQ=255)

                                                                                     cGCTCAGGCCTACTTCGTCGATGGCACGAGTGTCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCg                                                >  2:1023526/1‑140 (MQ=255)

                                                                                        tCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCgaga                                             <  1:895008/140‑1 (MQ=255)

                                                                                        tCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCgaga                                             <  2:682985/140‑1 (MQ=255)

                                                                                          aGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGata                                           <  2:423726/140‑1 (MQ=255)

                                                                                           ggCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGatat                                          >  1:1612878/1‑140 (MQ=255)

                                                                                               tACTTCGTCGATGGCACGAGTATCAGTAGCGCCTTCCGCGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTGCCGGACGGGTAGCGCGGGCGCTCAACATATTGGCGAGATATTGCa                                      <  2:1412066/140‑1 (MQ=255)

                                                                                               tACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCa                                      >  2:1400753/1‑140 (MQ=255)

                                                                                               tACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCa                                      <  1:1508209/140‑1 (MQ=255)

                                                                                               tACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCa                                      <  1:773836/140‑1 (MQ=255)

                                                                                               tACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCa                                      <  2:792639/140‑1 (MQ=255)

                                                                                                aCTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCAc                                     <  2:383782/140‑1 (MQ=255)

                                                                                                aCTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCACAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCAc                                     >  1:268381/1‑140 (MQ=255)

                                                                                                   tcgtcgATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCgg                                  <  1:1578931/140‑1 (MQ=255)

                                                                                                    cgtcgATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGa                                 >  2:687524/1‑140 (MQ=255)

                                                                                                      tcgATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAAt                               >  2:29312/1‑140 (MQ=255)

                                                                                                      tcgATGGCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAAt                               >  2:1502507/1‑140 (MQ=255)

                                                                                                           ggCACGAGTATCAGTAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCa                          >  1:197116/1‑140 (MQ=255)

                                                                                                                         tAACGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACACAGGCTTTCGATGGCg            <  1:1048941/140‑1 (MQ=255)

                                                                                                                           aCGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCAGGCTTTCGATGGCggg          <  2:873345/140‑1 (MQ=255)

                                                                                                                            cGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCAGGCTTTCGATGGCGGgc         >  1:475773/1‑140 (MQ=255)

                                                                                                                            cGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCAGGCTTTCGATGGCGGgc         >  2:8979/1‑140 (MQ=255)

                                                                                                                            cGCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCAGGCTTTCGATGGCGGgc         >  1:1202659/1‑140 (MQ=255)

                                                                                                                             gCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCAGGCTTTCGATGGCGGgca        >  2:72501/1‑140 (MQ=255)

                                                                                                                             gCCTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCAGGCTTTCGATGGCGGgca        >  2:328960/1‑140 (MQ=255)

                                                                                                                               cTTCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCAGGCTTTCGATGGCGGgcagc      >  2:677383/1‑140 (MQ=255)

                                                                                                                                ttCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCAGGCTTTCGATGGCGGgcagca     <  2:894054/140‑1 (MQ=255)

                                                                                                                                 tCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCAGGCTTTCGATGGCGGGCAGCAc    >  2:1608362/1‑140 (MQ=255)

                                                                                                                                 tCCACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCAGGCTTTCGATGGCGGGCAGCAc    >  2:1142925/1‑140 (MQ=255)

                                                                                                                                   cACGGCTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCAGGCTTTCGATGGCGGGCAGCACGc  >  1:224853/1‑140 (MQ=255)

ATTTCCCGATGGCTGGTCGGGATAACAAAACGATCTTCATAGTTGGCAATGGCGAGATAGCGATACATCTCTTCGACCTGGGCGACGCTCAGGCCTACTTCGTCGATGGCACGAGTATCAGTAACGCCTTCCACGGTTTGTGAACGCATATAGTGGCGCATCGCCATCATCCGTTTCAGCGCCCGCAGTACCGGACCGGTATCGCCGGCACTCAACATATTGGCGAGATATTGCACCGGAATACGCAGGCTTTCGATGGCGGGCAGCACGC  >  NC_000913/1537460‑1537730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A