Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
116 |
98.7 |
3298914 |
99.2% |
3272522 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,719,182 |
T→C |
intergenic (+28/‑41) |
trxC → / → yfiP |
reduced thioredoxin 2/conserved protein YfiP |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,719,182 | 0 | T | C | 98.9%
| 321.6
/ ‑4.6
| 87 | intergenic (+28/‑41) | trxC/yfiP | reduced thioredoxin 2/conserved protein YfiP |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (45/41); total (45/42) |
| Fisher's exact test for biased strand distribution p-value = 4.83e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.99e-01 |
TCGTAGTATACCGACGATCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGTTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGTAATCGCGTTCGTCGCTGCCA > NC_000913/2719046‑2719317
|
tCGTAGTATACCGACGATCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGcttt < 1:488568/140‑1 (MQ=255)
cGTAGTATACCGACGATCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTtc < 1:682088/140‑1 (MQ=255)
cGTAGTATACCGACGATCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTtc < 2:683482/140‑1 (MQ=255)
cGTAGTATACCGACGATCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTtc > 2:329238/1‑140 (MQ=255)
gtagtaTACCGACGATCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTtct > 1:90331/1‑140 (MQ=255)
agtaTACCGACGATCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTctcc > 2:617462/1‑140 (MQ=255)
tataCCGACGATCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTctcctc < 1:592264/140‑1 (MQ=255)
aCCGACGATCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGc > 2:1249855/1‑140 (MQ=255)
ccGACGATCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCg < 1:398498/140‑1 (MQ=255)
ccGACGATCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCg > 1:377533/1‑140 (MQ=255)
cgacgaTCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGa > 2:936263/1‑140 (MQ=255)
cgacgaTCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGGGCCCCGCTTTCTCCTCTGCGa > 1:1087880/1‑140 (MQ=255)
acgaTCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACa > 2:483960/1‑140 (MQ=255)
acgaTCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACa > 1:1573690/1‑140 (MQ=255)
cgaTCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACaa > 2:1574166/1‑140 (MQ=255)
cgaTCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGACTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACaa > 2:1270375/1‑140 (MQ=255)
aTCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATg > 2:1330553/1‑140 (MQ=255)
aTCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATg > 1:1033894/1‑140 (MQ=255)
cATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGc > 1:70957/1‑140 (MQ=255)
tGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGt > 1:1221468/1‑140 (MQ=255)
tttCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGttttt > 2:397448/1‑140 (MQ=255)
cAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCg < 2:1066310/140‑1 (MQ=255)
cAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCg > 2:1497829/1‑140 (MQ=255)
aaaaaCGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGa < 1:1295175/140‑1 (MQ=255)
aaaCGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACg < 2:1000876/140‑1 (MQ=255)
aaCGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGTTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGc < 1:1495114/140‑1 (MQ=255)
aaCGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGc < 2:965624/140‑1 (MQ=255)
aaCGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGc < 2:51730/140‑1 (MQ=255)
aCGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGct < 1:712760/140‑1 (MQ=255)
aCGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGct < 2:173823/140‑1 (MQ=255)
aCGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGct < 1:65562/140‑1 (MQ=255)
aCGGTCAGGTTGTCCACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAGTCTCATTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGct < 2:404272/140‑1 (MQ=255)
aGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTa < 1:977810/140‑1 (MQ=255)
aGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTa < 1:1622303/140‑1 (MQ=255)
gTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATg < 1:1229530/140‑1 (MQ=255)
tCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCg > 1:73239/1‑140 (MQ=255)
tGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACg > 2:1075563/1‑140 (MQ=255)
tGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACg < 1:1635236/140‑1 (MQ=255)
tGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACg < 2:1087880/140‑1 (MQ=255)
tGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACg > 2:232815/1‑140 (MQ=255)
ttAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTg < 2:897637/140‑1 (MQ=255)
cgcAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCa > 2:22239/1‑140 (MQ=255)
cgcAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCa > 1:397734/1‑140 (MQ=255)
cAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGt > 1:1101773/1‑140 (MQ=255)
cAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGt > 2:826020/1‑140 (MQ=255)
aGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTTGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGtt > 2:1482677/1‑140 (MQ=255)
aGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGCTTTTTCGACGCGCTCTTGTGACCGAAAACGCTGTTCTCCAGtt > 2:1618941/1‑140 (MQ=255)
tACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTAc > 1:1481170/1‑140 (MQ=255)
ccGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTAcgc < 1:1159458/140‑1 (MQ=255)
gAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACgcgc < 2:70957/140‑1 (MQ=255)
gAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACgcgc < 1:1330553/140‑1 (MQ=255)
gAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACgcgc < 1:1497829/140‑1 (MQ=255)
gAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACgcgc < 1:483960/140‑1 (MQ=255)
gAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACgcgc < 1:617462/140‑1 (MQ=255)
gAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACgcgc < 1:487403/140‑1 (MQ=255)
aaaGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGcc > 1:185077/1‑140 (MQ=255)
aGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGa > 1:42690/1‑140 (MQ=255)
gcCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCAACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCg > 1:1212915/1‑140 (MQ=255)
cGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTa > 1:203241/1‑140 (MQ=255)
tCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTg < 1:1090807/140‑1 (MQ=255)
cGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTgc < 1:232815/140‑1 (MQ=255)
cGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTgc < 1:1075563/140‑1 (MQ=255)
ggctgAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCaa > 1:259778/1‑140 (MQ=255)
ggctgAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGAGCGCaa > 2:1190774/1‑140 (MQ=255)
gctgAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAac > 1:1568889/1‑140 (MQ=255)
gctgAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAac > 1:1141178/1‑140 (MQ=255)
ctgAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAaca < 2:1010936/140‑1 (MQ=255)
gAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACg < 2:147899/140‑1 (MQ=255)
gAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACg < 2:377533/140‑1 (MQ=255)
gAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACg < 1:473659/140‑1 (MQ=255)
gAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACg < 2:240934/140‑1 (MQ=255)
aaCGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGt > 1:574323/1‑140 (MQ=255)
aaCGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGt > 2:89488/1‑140 (MQ=255)
aCGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTc < 2:1185053/140‑1 (MQ=255)
gAATCTCTTTAATCTTACCGGGACGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCt > 1:886762/1‑140 (MQ=255)
tctcTTTAATCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTTTGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCtttt > 1:1026345/1‑140 (MQ=255)
tttAATCTTGCCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTg < 2:1514337/140‑1 (MQ=255)
aTCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCcg < 2:1574880/140‑1 (MQ=255)
aTCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCcg < 2:1481170/140‑1 (MQ=255)
aTCTTACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCcg < 2:73239/140‑1 (MQ=255)
tACCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGt < 1:1038472/140‑1 (MQ=255)
aCCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGTa > 1:1430414/1‑140 (MQ=255)
aCCGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGTa > 1:906806/1‑140 (MQ=255)
ccGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGTaa > 1:1619846/1‑140 (MQ=255)
ccGGGGCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGTaa > 1:529435/1‑140 (MQ=255)
ggCGCATCTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGTAATcgc > 2:549097/1‑140 (MQ=255)
cTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGTAATCGCGTtcgtc < 2:1461435/140‑1 (MQ=255)
cTTGTGCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGTAATCGCGTtcgtc < 1:22239/140‑1 (MQ=255)
tgCCCCGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGTAATCGCGTTCGTCGCTg > 1:1069998/1‑140 (MQ=255)
ccccGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGTAATCGCGTTCGTCGCTGcc > 2:1364698/1‑140 (MQ=255)
cccGCTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGTAATCGCGTTCGTCGCTGCCa < 2:1182989/140‑1 (MQ=255)
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TCGTAGTATACCGACGATCATGATTTTCAAAAACGGTCAGGTTGTCGACATGCTTAATGGCGCAGTACCGAAAGCGCCGTTCGATAGCTGGCTGAACGAATCTCTTTAATCTTACCGGGGCGCATCTTGTGCCCCGTTTTCTCCTCTGCGACAATGGCGTTTTTTCGACGCTCTCTTATGACCGAAAACGCTGTTCTCCAGTTACGCGCCGAGCGTATTGCGCGCGCAACACGTCCTTTTCTTGCCCGCGGTAATCGCGTTCGTCGCTGCCA > NC_000913/2719046‑2719317
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
