Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 120 56.0 1898522 99.4% 1887130 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,804,810 (A)7→8 pseudogene (1717/1900 nt) arpB → putative ankyrin repeat protein B, N‑terminal fragment

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,804,8031.A98.6% 248.7 / ‑4.7 71pseudogene (1710/1900 nt)arpBputative ankyrin repeat protein B, N‑terminal fragment
Reads supporting (aligned to +/- strand):  ref base . (0/0);  major base A (37/33);  minor base G (1/0);  total (38/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGC‑AAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCT  >  NC_000913/1804672‑1804930
                                                                                                                                    |                                                                                                                               
gTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGC‑aaaaaaaa                                                                                                                         >  2:603065/1‑139 (MQ=255)
gTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGC‑aaaaaaaa                                                                                                                         >  2:774532/1‑139 (MQ=255)
 ttGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGC‑aaaaaaaac                                                                                                                        >  1:904046/1‑138 (MQ=255)
  tGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGC‑aaaaaaaaca                                                                                                                       <  2:680010/140‑4 (MQ=255)
       aaaGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCtt                                                                                                                   <  1:413625/140‑1 (MQ=255)
          gCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTa                                                                                                                >  1:320370/1‑140 (MQ=255)
            tAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGt                                                                                                              <  2:904046/140‑1 (MQ=255)
              aCATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCa                                                                                                            >  2:754568/1‑140 (MQ=255)
                atcatGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAAc                                                                                                          <  1:754568/140‑1 (MQ=255)
                   atGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATc                                                                                                       >  2:45491/1‑140 (MQ=255)
                    tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCa                                                                                                      <  1:603065/140‑1 (MQ=255)
                    tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCa                                                                                                      >  2:241981/1‑140 (MQ=255)
                    tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCa                                                                                                      <  2:719793/140‑1 (MQ=255)
                    tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCa                                                                                                      <  2:792983/140‑1 (MQ=255)
                    tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCa                                                                                                      >  1:678038/1‑140 (MQ=255)
                    tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATGCTTTTAGTCAACATCa                                                                                                      <  1:388227/140‑1 (MQ=255)
                           attaAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACAt                                                                                                        <  2:145500/131‑1 (MQ=255)
                           attaAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACAt                                                                                                        >  1:145500/1‑131 (MQ=255)
                                      cTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGc                                                                                    <  2:357957/140‑1 (MQ=255)
                                      cTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGc                                                                                    >  1:557315/1‑140 (MQ=255)
                                      cTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGc                                                                                    >  1:344208/1‑140 (MQ=255)
                                              caGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTaaaa                                                                            >  1:687927/1‑140 (MQ=255)
                                              caGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTaaaa                                                                            >  2:339286/1‑140 (MQ=255)
                                                   aaCCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCAt                                                                       <  2:678038/140‑1 (MQ=255)
                                                      cccTGCATTATACATCGCCATGAGCAAGGGTAATGAACACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGac                                                                    >  1:806981/1‑140 (MQ=255)
                                                        cTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGacaa                                                                  <  1:774532/140‑1 (MQ=255)
                                                           cATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCGAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACAt                                                               >  2:633321/1‑140 (MQ=255)
                                                           cATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACAt                                                               >  1:497581/1‑140 (MQ=255)
                                                             ttATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGac                                                                    >  2:42420/1‑133 (MQ=255)
                                                             ttATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGac                                                                    <  1:42420/133‑1 (MQ=255)
                                                             ttATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGt                                                             <  2:557315/140‑1 (MQ=255)
                                                                taCATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAg                                                          >  2:398220/1‑140 (MQ=255)
                                                                 aCATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGc                                                         <  2:320370/140‑1 (MQ=255)
                                                                 aCATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGc                                                         <  1:241981/140‑1 (MQ=255)
                                                                   aTCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTg                                                       >  2:333588/1‑140 (MQ=255)
                                                                    tCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGt                                                      <  2:344208/140‑1 (MQ=255)
                                                                     cGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGtt                                                     >  1:397231/1‑140 (MQ=255)
                                                                     cGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGtt                                                     >  2:368688/1‑140 (MQ=255)
                                                                     cGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGtt                                                     >  1:176233/1‑140 (MQ=255)
                                                                      gCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTc                                                            >  1:243964/1‑132 (MQ=255)
                                                                      gCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTc                                                            <  2:243964/132‑1 (MQ=255)
                                                                         aTGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCata                                                 <  2:176233/140‑1 (MQ=255)
                                                                         aTGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCata                                                 <  1:433822/140‑1 (MQ=255)
                                                                               aaGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCa                                           <  2:806981/140‑1 (MQ=255)
                                                                                aGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCAt                                          <  2:497581/140‑1 (MQ=255)
                                                                                 gggTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCAtt                                         >  2:1477/1‑140 (MQ=255)
                                                                                 gggTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCAtt                                         >  1:944584/1‑140 (MQ=255)
                                                                                  ggTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATtc                                        <  1:1477/140‑1 (MQ=255)
                                                                                  ggTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATtc                                        >  1:834289/1‑140 (MQ=255)
                                                                                       tGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCa                                           >  2:909757/1‑132 (MQ=255)
                                                                                       tGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCa                                           <  1:909757/132‑1 (MQ=255)
                                                                                        gAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATa                                  <  2:687927/140‑1 (MQ=255)
                                                                                          aGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAg                                <  2:371989/140‑1 (MQ=255)
                                                                                          aGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAg                                <  1:45491/140‑1 (MQ=255)
                                                                                          aGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAg                                <  2:567574/140‑1 (MQ=255)
                                                                                            aCGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCa                              >  2:209935/1‑140 (MQ=255)
                                                                                            aCGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCa                              >  1:886819/1‑140 (MQ=255)
                                                                                             cgtcgtGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCAt                                          <  1:472141/127‑1 (MQ=255)
                                                                                             cgtcgtGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCAt                                          >  2:472141/1‑127 (MQ=255)
                                                                                             cgtcgtGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATa                                  >  2:739394/1‑135 (MQ=255)
                                                                                             cgtcgtGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATa                                  <  1:739394/135‑1 (MQ=255)
                                                                                             cgtcgtGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCAt                             >  2:285947/1‑140 (MQ=255)
                                                                                                cgtGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCAtt                                         >  1:839684/1‑125 (MQ=255)
                                                                                                cgtGTTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCAtt                                         <  2:839684/125‑1 (MQ=255)
                                                                                                 gtgtTATCTTATATATCGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATtata                         >  2:52693/1‑140 (MQ=255)
                                                                                                                 cGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAAc                     >  2:205927/1‑128 (MQ=255)
                                                                                                                 cGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAAc                     <  1:205927/128‑1 (MQ=255)
                                                                                                                 cGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACata         >  1:778413/1‑140 (MQ=255)
                                                                                                                 cGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACata         >  1:453121/1‑140 (MQ=255)
                                                                                                                 cGACGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACata         >  1:338562/1‑140 (MQ=255)
                                                                                                                  gACGCTGGGCGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACatat        >  1:736211/1‑140 (MQ=255)
                                                                                                                   aCGCTTGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACAtatt       >  2:561799/1‑140 (MQ=255)
                                                                                                                   aCGCTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACAtatt       >  2:577254/1‑140 (MQ=255)
                                                                                                                      cTGGGTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTAtg    <  1:398220/140‑1 (MQ=255)
                                                                                                                        gggTGCTTTTGCAAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTAtgct  <  2:834289/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                               
GTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTTGC‑AAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGCTGTTCATATAGCCATTCATCATAAGCATTATAAAACTGTAGAAACATATTATGCT  >  NC_000913/1804672‑1804930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A