Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 106 90.3 3060316 99.2% 3035833 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,740,447 G→A W179* (TGG→TGA)  ydhC → putative transporter YdhC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,740,4470GA98.7% 246.9 / ‑4.4 74W179* (TGG→TGA) ydhCputative transporter YdhC
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base A (25/48);  total (26/48)
Fisher's exact test for biased strand distribution p-value = 3.51e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01

CCATCATGCCGCTGGTGGGTCTATCTCCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGGCTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCAGCCAGTTTTTTTGCATGGCTGAC  >  NC_000913/1740311‑1740581
                                                                                                                                        |                                                                                                                                      
ccATCATGCCGCTGGTGGGTCTATCTCCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTc                                                                                                                                     <  2:1132710/140‑1 (MQ=255)
      tGCCGCTGGTGGGTCTATCTCCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAAccc                                                                                                                               <  2:949329/140‑1 (MQ=255)
            tggtggGTCTATCTCCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCacgacg                                                                                                                         <  1:851443/140‑1 (MQ=255)
            tggtggGTCTATCTCCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCacgacg                                                                                                                         <  1:471309/140‑1 (MQ=255)
            tggtggGTCTATCTCCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCacgacg                                                                                                                         <  1:1184838/140‑1 (MQ=255)
            tggtggGTCTATCTCCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCacgacg                                                                                                                         <  2:1485915/140‑1 (MQ=255)
                gggTCTATCTCCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAgg                                                                                                                     <  1:412520/140‑1 (MQ=255)
                gggTCTATCTCCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAgg                                                                                                                     <  2:959100/140‑1 (MQ=255)
                    cTATCTCCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCg                                                                                                                 <  1:983433/140‑1 (MQ=255)
                    cTATCTCCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCg                                                                                                                 <  1:497097/140‑1 (MQ=255)
                       tctcCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTaa                                                                                                              <  2:456963/140‑1 (MQ=255)
                        ctcCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAAc                                                                                                             >  2:1516084/1‑140 (MQ=255)
                         tcCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACa                                                                                                            <  1:108908/140‑1 (MQ=255)
                         tcCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACa                                                                                                            <  1:228066/140‑1 (MQ=255)
                             gCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAg                                                                                                        <  2:1099843/140‑1 (MQ=255)
                             gCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAg                                                                                                        >  2:1498908/1‑140 (MQ=255)
                              cACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGt                                                                                                       <  2:240235/140‑1 (MQ=255)
                                 tGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAg                                                                                                    >  2:302357/1‑140 (MQ=255)
                                 tGGCTCCTCAGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAg                                                                                                    >  2:1389289/1‑140 (MQ=255)
                                  ggCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAgg                                                                                                   <  1:492890/140‑1 (MQ=255)
                                  ggCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAgg                                                                                                   <  2:991008/140‑1 (MQ=255)
                                  ggCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAgg                                                                                                   <  1:109966/140‑1 (MQ=255)
                                  ggCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAgg                                                                                                   <  2:191229/140‑1 (MQ=255)
                                  ggCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAgg                                                                                                   <  1:1155691/140‑1 (MQ=255)
                                   gCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGa                                                                                                  >  1:574284/1‑140 (MQ=255)
                                   gCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGa                                                                                                  >  1:776350/1‑140 (MQ=255)
                                       ctctGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGt                                                                                              <  2:714139/140‑1 (MQ=255)
                                        tctGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTc                                                                                             >  1:123374/1‑140 (MQ=255)
                                            ttAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGAc                                                                                         <  1:1231671/140‑1 (MQ=255)
                                            ttAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGAc                                                                                         <  1:1162497/140‑1 (MQ=255)
                                                 aaGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTa                                                                                    >  1:241140/1‑140 (MQ=255)
                                                   gctggctgCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTAcc                                                                                  >  2:498810/1‑140 (MQ=255)
                                                    ctggctgCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCg                                                                                 >  2:979828/1‑140 (MQ=255)
                                                    ctggctgCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCg                                                                                 >  2:1377544/1‑140 (MQ=255)
                                                     tggctgCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGa                                                                                >  2:1370271/1‑140 (MQ=255)
                                                      ggctgCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGAc                                                                               >  2:924365/1‑140 (MQ=255)
                                                      ggctgCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGAc                                                                               >  2:1212207/1‑140 (MQ=255)
                                                      ggctgCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGAc                                                                               >  2:418602/1‑140 (MQ=255)
                                                      ggctgCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGAc                                                                               >  1:377074/1‑140 (MQ=255)
                                                      ggctgCTGGTCCA‑TTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGAcc                                                                              >  1:826466/1‑140 (MQ=255)
                                                       gctgctGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGAcc                                                                              <  1:814051/140‑1 (MQ=255)
                                                           ctgGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCt                                                                          <  2:574284/140‑1 (MQ=255)
                                                             ggTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCA‑TACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACg                                                                       <  1:853157/140‑1 (MQ=255)
                                                                        ccTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAAcc                                                             <  1:79970/140‑1 (MQ=255)
                                                                          tGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTa                                                           <  1:1069270/140‑1 (MQ=255)
                                                                                gCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCgg                                                     >  1:808310/1‑140 (MQ=255)
                                                                                  gATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCa                                                   <  1:1101021/140‑1 (MQ=255)
                                                                                  gATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCa                                                   <  1:1471842/140‑1 (MQ=255)
                                                                                  gATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCa                                                   <  1:1212207/140‑1 (MQ=255)
                                                                                  gATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCa                                                   <  2:754966/140‑1 (MQ=255)
                                                                                   aTTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCaa                                                  <  2:826469/140‑1 (MQ=255)
                                                                                     tttCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACg                                                <  1:492235/140‑1 (MQ=255)
                                                                                     tttCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACg                                                <  2:1006196/140‑1 (MQ=255)
                                                                                       tCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTg                                              <  2:776350/140‑1 (MQ=255)
                                                                                       tCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTg                                              <  1:785782/140‑1 (MQ=255)
                                                                                       tCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTg                                              <  1:1085782/140‑1 (MQ=255)
                                                                                       tCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTg                                              <  2:533666/140‑1 (MQ=255)
                                                                                                tGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATAc                                     <  1:1389289/140‑1 (MQ=255)
                                                                                                   ttGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCa                                  >  1:1085742/1‑140 (MQ=255)
                                                                                                        aTTACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTg                             >  1:268587/1‑140 (MQ=255)
                                                                                                          tACCGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGtt                           >  2:842345/1‑140 (MQ=255)
                                                                                                            ccGTGGTGCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCa                         >  2:1203648/1‑140 (MQ=255)
                                                                                                              gtggtgCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCAGc                       <  1:695473/140‑1 (MQ=255)
                                                                                                                ggtgCTGATTCTGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTACCACTAGTAAGGCTGGTCTGACCTCTACCGACCTGCTACGTTCTAAAACCTATCGCGGCACCGCGCTGACATACGCAGCCTGCTCAGCCa                     >  2:238794/1‑140 (MQ=255)
                                                                                                                           tGCCTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCAGCCAGTTTTTTTGCa          <  1:170553/140‑1 (MQ=255)
                                                                                                                             ccTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCAGCCAGTTTTTTTGCATg        >  2:32969/1‑140 (MQ=255)
                                                                                                                              cTATTTTCTGGCTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCAGCCAGTTTTTTTGCATgg       >  1:259754/1‑140 (MQ=255)
                                                                                                                              cTATTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCAGCCAGTTTTTTTGCATgg       <  1:1104162/140‑1 (MQ=255)
                                                                                                                                aTTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCAGCCAGTTTTTTTGCATGGCt     <  1:1346235/140‑1 (MQ=255)
                                                                                                                                aTTTTCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCAGCCAGTTTTTTTGCATGGCt     <  1:651537/140‑1 (MQ=255)
                                                                                                                                 ttttCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCAGCCAGTTTTTTTGCATGGCTg    >  2:539301/1‑140 (MQ=255)
                                                                                                                                   ttCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCAGCCAGTTTTTTTGCATGGCTGAc  <  1:1498908/140‑1 (MQ=255)
                                                                                                                                   ttCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCAGCCAGTTTTTTTGCATGGCTGAc  <  1:1165992/140‑1 (MQ=255)
                                                                                                                                   ttCTGACTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCAGCCAGTTTTTTTGCATGGCTGAc  <  2:1258256/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                      
CCATCATGCCGCTGGTGGGTCTATCTCCGGCACTGGCTCCTCTGTTAGGAAGCTGGCTGCTGGTCCATTTTTCCTGGCAGGCGATTTTCGCCACCCTGTTTGCCATTACCGTGGTGCTGATTCTGCCTATTTTCTGGCTCAAACCCACGACGAAGGCCCGTAACAATAGTCAGGATGGTCTGACCTTTACCGACCTGCTACGTTCTAAAACCTATCGCGGCAACGTGCTGATATACGCAGCCTGTTCAGCCAGTTTTTTTGCATGGCTGAC  >  NC_000913/1740311‑1740581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A