Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I1 R1
|
106 |
90.3 |
3060316 |
99.2% |
3035833 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,109,385 |
G→A |
A67V (GCA→GTA) |
rfbX ← |
polyisoprenol‑linked O‑antigen repeat unit flippase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,109,385 | 0 | G | A | 99.1%
| 378.5
/ ‑4.4
| 108 | A67V (GCA→GTA) | rfbX | polyisoprenol‑linked O‑antigen repeat unit flippase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (36/71); total (36/72) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 |
Only 100 of 108 total aligned reads displayed.
TCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATGGAAATGTAAGCAATGGTAAAAGATAA > NC_000913/2109250‑2109519
|
tCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACtgt < 2:581963/140‑1 (MQ=255)
tCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACtgt < 1:258480/140‑1 (MQ=255)
tCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACtgt < 2:1451355/140‑1 (MQ=255)
tCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACtgt < 2:782004/140‑1 (MQ=255)
cAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACtgtg > 2:918094/1‑140 (MQ=255)
aGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTga < 1:1262417/140‑1 (MQ=255)
caagcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTg < 2:1040644/140‑1 (MQ=255)
caagcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTg < 2:826977/140‑1 (MQ=255)
agcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGaa > 1:857136/1‑140 (MQ=255)
agcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGaa > 1:443876/1‑140 (MQ=255)
agcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGaa > 1:434332/1‑140 (MQ=255)
agcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGaa > 2:1255026/1‑140 (MQ=255)
agcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGaa > 1:1132517/1‑140 (MQ=255)
gcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGaaa > 1:759208/1‑140 (MQ=255)
gcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGaaa < 2:809537/140‑1 (MQ=255)
gTCATCGACGTTAAGAAAATCAATGTAGTGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCata < 1:1459875/140‑1 (MQ=255)
gTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCata > 2:753241/1‑140 (MQ=255)
gTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCata < 2:414112/140‑1 (MQ=255)
cGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTcaa < 2:276823/140‑1 (MQ=255)
cGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTcaa > 2:454740/1‑140 (MQ=255)
gTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCaacaaa < 1:689938/140‑1 (MQ=255)
gTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATCCaacaaa < 2:497710/140‑1 (MQ=255)
tAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCaacaaaca < 2:673828/140‑1 (MQ=255)
tAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCaacaaaca < 1:1434380/140‑1 (MQ=255)
tAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCaacaaaca < 1:1285603/140‑1 (MQ=255)
tAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCaacaaaca < 2:431197/140‑1 (MQ=255)
tAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCaacaaaca < 1:1131761/140‑1 (MQ=255)
tAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCaacaaaca < 2:660025/140‑1 (MQ=255)
tAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCaacaaaca < 2:1152945/140‑1 (MQ=255)
tAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCaacaaaca < 1:1126285/140‑1 (MQ=255)
tAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCaacaaaca < 1:1099143/140‑1 (MQ=255)
tAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAAAAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCaacaaaca < 1:1009841/140‑1 (MQ=255)
aGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACAtt < 2:409351/140‑1 (MQ=255)
gAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTa < 2:1280967/140‑1 (MQ=255)
gAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTa < 1:1470774/140‑1 (MQ=255)
gAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTa < 2:302692/140‑1 (MQ=255)
aaaaTCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTAt < 2:762595/140‑1 (MQ=255)
aaaTCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATc < 1:235317/140‑1 (MQ=255)
aaaTCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATc < 1:1514525/140‑1 (MQ=255)
aaaTCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATc < 1:949445/140‑1 (MQ=255)
aaaTCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATc < 2:776339/140‑1 (MQ=255)
aTCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCat > 2:1288518/1‑140 (MQ=255)
aTCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCat > 2:1524872/1‑140 (MQ=255)
tCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCata < 1:320824/140‑1 (MQ=255)
tCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCata < 1:787693/140‑1 (MQ=255)
tGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCAtatata > 2:1362385/1‑140 (MQ=255)
tGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATa > 2:535669/1‑140 (MQ=255)
aTAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGc > 2:473755/1‑140 (MQ=255)
aTAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGc < 1:1330520/140‑1 (MQ=255)
aTAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGc > 2:867811/1‑140 (MQ=255)
aaGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCtt > 2:830435/1‑140 (MQ=255)
aGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTg > 2:849242/1‑140 (MQ=255)
gAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTgg > 1:1356700/1‑140 (MQ=255)
aaCTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGc < 1:653397/140‑1 (MQ=255)
cTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCaa > 2:1438257/1‑140 (MQ=255)
aTTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCaaaa > 2:1145525/1‑140 (MQ=255)
gAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGaa > 1:1355267/1‑140 (MQ=255)
aCCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGaa < 1:1490804/140‑1 (MQ=255)
cGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAAt > 1:936303/1‑140 (MQ=255)
cccAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAAttt > 1:719132/1‑140 (MQ=255)
ccAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAAtttt < 2:1463587/140‑1 (MQ=255)
cAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTc < 2:1339158/140‑1 (MQ=255)
cGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAgtg < 2:118963/140‑1 (MQ=255)
gTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAgtgt < 1:1206511/140‑1 (MQ=255)
gTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAgtgt < 1:1145525/140‑1 (MQ=255)
gTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAgtgt < 1:867811/140‑1 (MQ=255)
ttACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGtt < 2:540665/140‑1 (MQ=255)
ttACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGtt < 2:1023403/140‑1 (MQ=255)
tttATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTa < 1:344324/140‑1 (MQ=255)
ttATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTAc < 1:849242/140‑1 (MQ=255)
ttATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTAc < 1:335892/140‑1 (MQ=255)
ttATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTAc < 1:473755/140‑1 (MQ=255)
tATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAATCCGAATATACCGAAAATTTCAGGACCAAGTGTTCTTACa < 1:1362183/140‑1 (MQ=255)
tATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACa < 1:1465262/140‑1 (MQ=255)
tATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACa < 1:1456561/140‑1 (MQ=255)
tATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACa < 1:454740/140‑1 (MQ=255)
tATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACa < 2:111669/140‑1 (MQ=255)
tATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACa < 1:476508/140‑1 (MQ=255)
tCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAg > 1:1512721/1‑128 (MQ=255)
tCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAg < 2:1512721/128‑1 (MQ=255)
aCTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATg < 2:408057/140‑1 (MQ=255)
aCTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATg > 1:1026572/1‑140 (MQ=255)
aCTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATg > 1:766296/1‑140 (MQ=255)
aCTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATg > 1:1228136/1‑140 (MQ=255)
aCTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATg < 1:1255026/140‑1 (MQ=255)
aCTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATg > 1:702040/1‑140 (MQ=255)
aCTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATg < 2:1355267/140‑1 (MQ=255)
cTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATgg < 2:107026/140‑1 (MQ=255)
cTATCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATgg < 2:443876/140‑1 (MQ=255)
aTCTGCTGCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATGGaa < 1:830435/140‑1 (MQ=255)
ctgctgCTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATGGAAAt > 1:48695/1‑140 (MQ=255)
tgctgcTTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATGGAAATg > 2:1352303/1‑140 (MQ=255)
gctgctTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATGGAAATGt > 1:548904/1‑140 (MQ=255)
ctTTGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATGGAAATGTAAGc < 1:756350/140‑1 (MQ=255)
tttGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATGGAAATGTAAGCa < 1:918094/140‑1 (MQ=255)
tGGCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATGGAAATGTAAGCAAt > 2:268714/1‑140 (MQ=255)
gCAATACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATGGAAATGTAAGCAATgg < 1:2854/140‑1 (MQ=255)
aaTACTCTGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATGGAAATGTAAGCAATGGTa < 2:575674/140‑1 (MQ=255)
ctGAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATGGAAATGTAAGCAATGGTAAAAGAt < 1:482464/140‑1 (MQ=255)
gAGTTACTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATGGAAATGTAAGCAATGGTAAAAGATaa > 2:508072/1‑140 (MQ=255)
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TCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCCAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATATACCGAAATTTTCAGGACCAAGTGTTCTTACAAGATATGGAAATGTAAGCAATGGTAAAAGATAA > NC_000913/2109250‑2109519
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
