Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 106 90.3 3060316 99.2% 3035833 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,202,735 (C)5→4 coding (2457/3633 nt) yehI → DUF4132 domain‑containing protein YehI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,202,7310C.100.0% 513.8 / NA 116coding (2453/3633 nt)yehIDUF4132 domain‑containing protein YehI
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (59/57);  total (59/57)

Only 100 of 122 total aligned reads displayed.

GAAATTATCGGCGAAATGCTGCGCTTTACCCAGGGGGGACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTGCCCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGAA  >  NC_000913/2202592‑2202863
                                                                                                                                           |                                                                                                                                    
gAAATTATCGGCGAAATGCTGCGCTTTACCCAGGGGGGACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTGc                                                                                                                                      >  2:1224672/1‑140 (MQ=255)
    ttATCGGCGAAATGCTGCGCTTTACCCAGGGGGGACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTGccccg                                                                                                                                  <  2:1078965/140‑2 (MQ=255)
    ttATCGGCGAAATGCTGCGCTTTACCCAGGGGGGACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTGccccg                                                                                                                                  <  1:1134023/140‑2 (MQ=255)
      aTCGGCGAAATGCTGCGCTTTACCCAGGGGGGACGTCTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTGccccgca                                                                                                                                <  1:826348/140‑4 (MQ=255)
        cGGCGAAATGCTGCGCTTTACCCAGGGGGGACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGTCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCaaa                                                                                                                             >  1:1327749/1‑140 (MQ=255)
        cGGCGAAATGCTGCGCTTTACCCAGGGGGGACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCaaa                                                                                                                             >  2:1149548/1‑140 (MQ=255)
              aaTGCTGCGCTTTACCCAGGGGGGACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACaa                                                                                                                       <  2:395630/140‑1 (MQ=255)
                     cgcTTTACCCAGGGGGGACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCa                                                                                                                >  2:1494922/1‑140 (MQ=255)
                     cgcTTTACCCAGGGGGGACGTTTTGATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCa                                                                                                                >  2:1129835/1‑140 (MQ=255)
                              cAGGGGGGACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGTAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCg                                                                                                       <  2:1254696/140‑1 (MQ=255)
                               aGGGGGGACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGt                                                                                                      >  1:542277/1‑140 (MQ=255)
                                ggggggACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGtt                                                                                                     <  2:1155288/140‑1 (MQ=255)
                                 gggggACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTa                                                                                                    <  1:888019/140‑1 (MQ=255)
                                 gggggACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTa                                                                                                    >  1:674143/1‑140 (MQ=255)
                                 gggggACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTa                                                                                                    >  1:1233606/1‑140 (MQ=255)
                                 gggggACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTa                                                                                                    <  1:1304921/140‑1 (MQ=255)
                                 gggggACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTa                                                                                                    >  2:18450/1‑140 (MQ=255)
                                 gggggACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTa                                                                                                    >  1:1392033/1‑140 (MQ=255)
                                  ggggACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTaa                                                                                                   <  2:540204/140‑1 (MQ=255)
                                  ggggACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTaa                                                                                                   <  1:335101/140‑1 (MQ=255)
                                  ggggACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTaa                                                                                                   <  1:178116/140‑1 (MQ=255)
                                    ggACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGt                                                                                                 >  2:1329539/1‑140 (MQ=255)
                                    ggACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGt                                                                                                 >  2:485855/1‑140 (MQ=255)
                                    ggACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGt                                                                                                 <  2:1011190/140‑1 (MQ=255)
                                      aCGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAGGtct                                                                                               >  2:875040/1‑140 (MQ=255)
                                      aCGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGtct                                                                                               >  1:954244/1‑140 (MQ=255)
                                      aCGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGtct                                                                                               >  2:1306659/1‑140 (MQ=255)
                                      aCGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGtct                                                                                               >  1:1441735/1‑140 (MQ=255)
                                      aCGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGtct                                                                                               >  2:940894/1‑140 (MQ=255)
                                      aCGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGtct                                                                                               >  1:1134243/1‑140 (MQ=255)
                                      aCGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGtct                                                                                               >  2:39616/1‑140 (MQ=255)
                                      aCGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGtct                                                                                               >  2:1507955/1‑140 (MQ=255)
                                        gTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTctct                                                                                             <  1:323398/140‑1 (MQ=255)
                                             tataGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGt                                                                                        <  1:1430355/140‑1 (MQ=255)
                                                  cGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGa                                                                                   <  1:1289773/140‑1 (MQ=255)
                                                   gggCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGaa                                                                                  >  2:228777/1‑140 (MQ=255)
                                                    ggCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGaaa                                                                                 >  1:1467114/1‑140 (MQ=255)
                                                    ggCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGaaa                                                                                 >  2:1189380/1‑140 (MQ=255)
                                                    ggCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGaaa                                                                                 >  2:483623/1‑140 (MQ=255)
                                                    ggCTGGAACAACTGAAAACGTTCTGCCAGCCACAAAAGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGCG‑CCCCGCAAAAGGCCACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGaaa                                                                                 >  2:107474/1‑140 (MQ=255)
                                                      cTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAgc                                                                               <  2:1347856/140‑1 (MQ=255)
                                                       tGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAgcg                                                                              <  2:130232/140‑2 (MQ=255)
                                                       tGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAgca                                                                              >  2:1124889/1‑140 (MQ=255)
                                                        ggAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAgcac                                                                             <  1:485855/140‑1 (MQ=255)
                                                            caacTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAgcacggca                                                                         <  2:153459/140‑1 (MQ=255)
                                                            caacTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAgcacggca                                                                         <  1:483623/140‑1 (MQ=255)
                                                            caacTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAgcacggca                                                                         <  2:42240/140‑1 (MQ=255)
                                                              acTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAgcacggcacg                                                                       <  2:242651/140‑1 (MQ=255)
                                                               cTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGcacggcacgg                                                                      <  2:674143/140‑1 (MQ=255)
                                                               cTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGcacggcacgg                                                                      <  2:954244/140‑1 (MQ=255)
                                                               cTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGcacggcacgg                                                                      >  1:1185882/1‑140 (MQ=255)
                                                               cTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGcacggcacgg                                                                      >  1:41012/1‑140 (MQ=255)
                                                                  aaaaCGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGAt                                                                   <  1:1113126/140‑1 (MQ=255)
                                                                  aaaaCGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGAt                                                                   <  1:187417/140‑1 (MQ=255)
                                                                    aaCGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCt                                                                 >  2:1174097/1‑140 (MQ=255)
                                                                      cGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAGGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTga                                                               <  1:875040/140‑1 (MQ=255)
                                                                      cGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTga                                                               <  2:776024/140‑1 (MQ=255)
                                                                         tCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTgacga                                                            >  1:153639/1‑140 (MQ=255)
                                                                           tGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGaca                                                          >  1:35112/1‑140 (MQ=255)
                                                                            gccagccaCAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGacac                                                         <  1:1135620/140‑1 (MQ=255)
                                                                                      aaCGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGc                                               <  1:140089/140‑1 (MQ=255)
                                                                                      aaCGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGc                                               <  1:1329539/140‑1 (MQ=255)
                                                                                      aaCGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGc                                               <  1:977335/140‑1 (MQ=255)
                                                                                            ggCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGcc                                         >  2:930665/1‑140 (MQ=255)
                                                                                              cAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCcac                                       >  1:189462/1‑140 (MQ=255)
                                                                                                 cTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACaag                                    >  1:675596/1‑140 (MQ=255)
                                                                                                     tGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAgg                                <  1:1067210/140‑1 (MQ=255)
                                                                                                             aTCTCTTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTg                        <  1:39616/140‑1 (MQ=255)
                                                                                                                tctTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAGCTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGACACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGccc                     <  1:107474/140‑1 (MQ=255)
                                                                                                                tctTCACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTTGCCTGGCCACAAGAAGGCAAATCTGccc                     <  1:1306659/140‑1 (MQ=255)
                                                                                                                    cACTGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGc                 <  2:1441735/140‑1 (MQ=255)
                                                                                                                       tGCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGt              >  2:1130194/1‑140 (MQ=255)
                                                                                                                        gCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGATGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTc             >  2:1101082/1‑140 (MQ=255)
                                                                                                                        gCGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTc             >  2:232067/1‑140 (MQ=255)
                                                                                                                         cGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCa            >  1:1006923/1‑140 (MQ=255)
                                                                                                                         cGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCa            >  1:1070356/1‑140 (MQ=255)
                                                                                                                         cGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCa            >  2:790648/1‑140 (MQ=255)
                                                                                                                         cGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCa            >  2:1286352/1‑140 (MQ=255)
                                                                                                                         cGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCa            >  1:1398998/1‑140 (MQ=255)
                                                                                                                         cGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCa            >  2:1165579/1‑140 (MQ=255)
                                                                                                                         cGTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCa            <  1:1491200/140‑1 (MQ=255)
                                                                                                                          gTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAg           >  1:581391/1‑140 (MQ=255)
                                                                                                                          gTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAg           >  1:1396287/1‑140 (MQ=255)
                                                                                                                          gTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAg           <  2:1467114/140‑1 (MQ=255)
                                                                                                                          gTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAg           <  2:1330474/140‑1 (MQ=255)
                                                                                                                          gTGGCAACAAGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAg           >  2:750228/1‑140 (MQ=255)
                                                                                                                               aacaaGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTGGGTGACGAAAGCACGGCACGGGATCTGGCGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGcc      <  2:1392033/140‑1 (MQ=255)
                                                                                                                                   ggCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGaa  <  2:550515/139‑1 (MQ=255)
                                                                                                                                   aGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGaa  <  2:1185882/140‑1 (MQ=255)
                                                                                                                                   aGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGaa  <  1:499803/140‑1 (MQ=255)
                                                                                                                                   aGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGaa  >  2:711398/1‑140 (MQ=255)
                                                                                                                                   aGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGaa  <  1:1411688/140‑1 (MQ=255)
                                                                                                                                   aGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGaa  <  1:1076957/140‑1 (MQ=255)
                                                                                                                                   aGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGaa  <  2:1082872/140‑1 (MQ=255)
                                                                                                                                   aGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGaa  <  1:1129835/140‑1 (MQ=255)
                                                                                                                                   aGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGaa  <  1:604019/140‑1 (MQ=255)
                                                                                                                                   aGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGaa  <  1:1192565/140‑1 (MQ=255)
                                                                                                                                   aGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGaa  <  1:1220307/140‑1 (MQ=255)
                                                                                                                                   aGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGaa  <  2:224040/140‑1 (MQ=255)
                                                                                                                                   aGCTGGTG‑CCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGaa  >  2:186319/1‑140 (MQ=255)
                                                                                                                                           |                                                                                                                                    
GAAATTATCGGCGAAATGCTGCGCTTTACCCAGGGGGGACGTTTTTATAGCGGGCTGGAACAACTGAAAACGTTCTGCCAGCCACAAACGCTGGCAGCTTTTGCCTGGGATCTCTTCACTGCGTGGCAACAAGCTGGTGCCCCCGCAAAAGACAACTGGGCATTTCTGGCGTTAAGTCTCTTTGGTGACGAAAGCACGGCACGGGATCTGACGACACAGATCCTCGCCTGGCCACAAGAAGGCAAATCTGCCCGTGCTGTCAGCGGCCTGAA  >  NC_000913/2202592‑2202863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A