Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	106	90.3	3060316	99.2%	3035833	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,552,261	A→G	intergenic (‑123/‑91)	ypeA ← / → amiA	putative acetyltransferase YpeA/N‑acetylmuramoyl‑L‑alanine amidase A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,552,261	0	A	G	100.0%	274.4 / NA	72	intergenic (‑123/‑91)	ypeA/amiA	putative acetyltransferase YpeA/N‑acetylmuramoyl‑L‑alanine amidase A
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (23/49); total (23/49)

TACGCGTATCTCCATGGTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGAAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTAAAAACACTCACTTCGCGCCGCCA  >  NC_000913/2552124‑2552395

tACGCGTATCTCCATGGTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATtgaaatggaa                                                                                                                                      >  1:874597/1‑140 (MQ=255)

     gTATCTCCATGGTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTaa                                                                                                                                 <  1:637761/140‑1 (MQ=255)

       aTCTCCATGGTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTaaaa                                                                                                                               <  1:444612/140‑1 (MQ=255)

       aTCTCCATGGTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTaaaa                                                                                                                               <  2:368967/140‑1 (MQ=255)

        tctcCATGGTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAAc                                                                                                                              >  2:1453861/1‑140 (MQ=255)

        tctcCATGGTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAAc                                                                                                                              >  2:550243/1‑140 (MQ=255)

          tcCATGGTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACaa                                                                                                                            <  1:1135348/140‑1 (MQ=255)

          tcCATGGTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACaa                                                                                                                            <  2:91336/140‑1 (MQ=255)

              tGGTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATtct                                                                                                                        >  1:57451/1‑140 (MQ=255)

              tGGTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATtct                                                                                                                        <  2:861/140‑1 (MQ=255)

               ggTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATtctc                                                                                                                       <  2:14295/140‑1 (MQ=255)

               ggTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATtctc                                                                                                                       <  2:876601/140‑1 (MQ=255)

                 tATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCaa                                                                                                                     >  1:395632/1‑140 (MQ=255)

                   ttCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACa                                                                                                                   >  1:1456851/1‑140 (MQ=255)

                   ttCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACa                                                                                                                   >  2:1480923/1‑140 (MQ=255)

                   ttCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACa                                                                                                                   >  1:1502153/1‑140 (MQ=255)

                        tACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCaaa                                                                                                              >  1:1386495/1‑140 (MQ=255)

                        tACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCaaa                                                                                                              >  2:116304/1‑140 (MQ=255)

                         aCCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAAc                                                                                                             <  2:1193443/140‑1 (MQ=255)

                         aCCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAAc                                                                                                             <  2:1502153/140‑1 (MQ=255)

                         aCCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAAc                                                                                                             <  1:439998/140‑1 (MQ=255)

                          ccTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAAcc                                                                                                            >  1:216105/1‑140 (MQ=255)

                           cTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACcg                                                                                                           >  1:1294211/1‑140 (MQ=255)

                             ttttGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACcgtc                                                                                                         <  1:354337/140‑1 (MQ=255)

                                  cGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTGTTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAAc                                                                                                    >  2:879228/1‑140 (MQ=255)

                                          aaGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTAcg                                                                                            <  1:19715/140‑1 (MQ=255)

                                            ggCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTAcgcg                                                                                          <  1:1483912/140‑1 (MQ=255)

                                             gCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGcga                                                                                         <  2:1289600/140‑1 (MQ=255)

                                             gCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGAGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGcga                                                                                         <  1:1137384/140‑1 (MQ=255)

                                              cTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTAACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGcgat                                                                                        <  1:277426/140‑1 (MQ=255)

                                               tGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGcgata                                                                                       <  1:1530087/140‑1 (MQ=255)

                                               tGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGcgata                                                                                       <  1:1270063/140‑1 (MQ=255)

                                               tGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGcgata                                                                                       <  1:1000334/140‑1 (MQ=255)

                                               tGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGcgata                                                                                       <  1:745280/140‑1 (MQ=255)

                                               tGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGcgata                                                                                       <  2:395632/140‑1 (MQ=255)

                                                gATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGcgatac                                                                                      <  2:1515981/140‑1 (MQ=255)

                                                gATCATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGcgatac                                                                                      <  1:809223/140‑1 (MQ=255)

                                                 aTTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGGTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAAACGTCGTAACGGATTACGcgatacg                                                                                     >  2:1235862/1‑140 (MQ=255)

                                                       gCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATaa                                                                               >  2:695172/1‑140 (MQ=255)

                                                        cGTGAACGGGCGGATTAGCCAATATCTGGCGAAAATCGGGTGAAAAAGAGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAAc                                                                              >  2:912719/1‑140 (MQ=255)

                                                                 tCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAAc                                                                     <  1:116304/140‑1 (MQ=255)

                                                                 tCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAAc                                                                     <  1:764138/140‑1 (MQ=255)

                                                                 tCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAAc                                                                     <  2:216105/140‑1 (MQ=255)

                                                                 tCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAAc                                                                     <  2:1045662/140‑1 (MQ=255)

                                                                 tCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAAc                                                                     <  1:1129914/140‑1 (MQ=255)

                                                                 tCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAAc                                                                     <  2:874597/140‑1 (MQ=255)

                                                                 tCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAAc                                                                     <  1:1453861/140‑1 (MQ=255)

                                                                 tCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAAc                                                                     <  1:144839/140‑1 (MQ=255)

                                                                 tCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAAc                                                                     >  2:919610/1‑140 (MQ=255)

                                                                    aaTTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACttt                                                                  <  1:1003929/140‑1 (MQ=255)

                                                                      ttAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTttat                                                                <  2:1260071/140‑1 (MQ=255)

                                                                      ttAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTttat                                                                <  2:1294211/140‑1 (MQ=255)

                                                                      ttAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTttat                                                                <  2:1456851/140‑1 (MQ=255)

                                                                      ttAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTttat                                                                <  1:1480923/140‑1 (MQ=255)

                                                                          ccAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTttattatt                                                            <  2:1164270/140‑1 (MQ=255)

                                                                                tCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTGTTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACt                                                      <  1:879228/140‑1 (MQ=255)

                                                                                tCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACt                                                      <  2:952382/140‑1 (MQ=255)

                                                                                tCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACt                                                      <  2:961119/140‑1 (MQ=255)

                                                                                   gACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAg                                                   >  1:276146/1‑140 (MQ=255)

                                                                                    aCGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAgg                                                  <  1:550243/140‑1 (MQ=255)

                                                                                     cGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGc                                                 <  2:74998/140‑1 (MQ=255)

                                                                                        aaaTCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGt                                              >  1:297/1‑140 (MQ=255)

                                                                                             ggTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAg                                         <  2:523861/140‑1 (MQ=255)

                                                                                             ggTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAg                                         <  2:598437/140‑1 (MQ=255)

                                                                                                     aaGTGGCATAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTa                                 <  2:1386495/140‑1 (MQ=255)

                                                                                                             tAATGGGGAGTTGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTa                         <  1:1271121/140‑1 (MQ=255)

                                                                                                                       ttGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTAAAAAcactca               >  1:1077183/1‑140 (MQ=255)

                                                                                                                       ttGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTAAAAAcactca               >  2:549471/1‑140 (MQ=255)

                                                                                                                       ttGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTAAAAAcactca               >  2:1192520/1‑140 (MQ=255)

                                                                                                                        tGTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTAAAAAcactcac              >  1:1056187/1‑140 (MQ=255)

                                                                                                                         gTCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTAAAAAcactcact             >  1:412677/1‑140 (MQ=255)

                                                                                                                          tCAACTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTAAAAACACTCACtt            >  2:1064215/1‑140 (MQ=255)

                                                                                                                              cTATTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTAAAAACACTCACTTcgcg        <  1:912719/140‑1 (MQ=255)

                                                                                                                                aTTGAAATGGAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTAAAAACACTCACTTCGcgcc      <  2:276146/140‑1 (MQ=255)

                                                                                                                                  tgaaatggaaAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTAAAAACACTCACTTCGcgccgc    <  2:57451/140‑1 (MQ=255)

                                                                                                                                    aaatggaaAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTAAAAACACTCACTTCGCGCCGCCa  >  1:1422616/1‑140 (MQ=255)

                                                                                                                                    aaatggaaAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTAAAAACACTCACTTCGCGCCGCCa  <  2:265815/140‑1 (MQ=255)

TACGCGTATCTCCATGGTATTCGTTACCTTTTTGCGGGTTAAAAGGCTGATTATGGCGTGAACGGTCGAATTAGCCAATATCTGACGAAAATCGGTTGAAAAAGTGGCATAATGGGGAGTTGTCAACTATTGAAATGAAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTATGAGCACTTTTAAACCACTAAAAACACTCACTTCGCGCCGCCA  >  NC_000913/2552124‑2552395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A