Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 106 90.3 3060316 99.2% 3035833 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,554,315 T→C L411L (TTG→CTG)  malT → DNA‑binding transcriptional activator MalT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,554,3150TC100.0% 260.7 / NA 69L411L (TTG→CTG) malTDNA‑binding transcriptional activator MalT
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (35/34);  total (35/34)

GGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACACCATGCACGCAGAATTTAACGCTCTGCG  >  NC_000913/3554179‑3554448
                                                                                                                                        |                                                                                                                                     
ggcggcAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTgg                                                                                                                                    >  2:1125993/1‑140 (MQ=255)
 gcggcAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGgt                                                                                                                                   >  1:1439167/1‑140 (MQ=255)
  cggcAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGgtg                                                                                                                                  <  2:608496/140‑1 (MQ=255)
             gcgcTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGc                                                                                                                       <  2:750868/140‑1 (MQ=255)
                         cgcgATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAATCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCa                                                                                                           >  1:1137484/1‑140 (MQ=255)
                         cgcgATATTCTGCTTAATCACGCCT‑GAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCaa                                                                                                          >  2:1058622/1‑140 (MQ=255)
                             atatTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGc                                                                                                       >  1:638166/1‑140 (MQ=255)
                             atatTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGc                                                                                                       >  2:1324492/1‑140 (MQ=255)
                                       tAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCt                                                                                             <  2:100811/140‑1 (MQ=255)
                                        aaTCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTa                                                                                            >  2:88783/1‑140 (MQ=255)
                                        aaTCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTa                                                                                            >  2:1315533/1‑140 (MQ=255)
                                          tCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACg                                                                                          >  1:382553/1‑140 (MQ=255)
                                          tCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACg                                                                                          >  2:751011/1‑140 (MQ=255)
                                           cACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACgg                                                                                         <  1:878228/140‑1 (MQ=255)
                                            aCGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAATCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGc                                                                                        <  2:1137484/140‑1 (MQ=255)
                                             cGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCg                                                                                       <  1:1324492/140‑1 (MQ=255)
                                              gCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGa                                                                                      <  1:492990/140‑1 (MQ=255)
                                               ccTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGaa                                                                                     >  1:514208/1‑140 (MQ=255)
                                                    aGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTaa                                                                                >  2:859923/1‑140 (MQ=255)
                                                    aGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTaa                                                                                >  2:220373/1‑140 (MQ=255)
                                                      tCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAaca                                                                              <  2:1282798/140‑1 (MQ=255)
                                                      tCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAaca                                                                              <  1:1125993/140‑1 (MQ=255)
                                                        tGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACAcc                                                                            >  2:1246717/1‑140 (MQ=255)
                                                        tGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACAcc                                                                            >  1:531832/1‑140 (MQ=255)
                                                          ttCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCt                                                                          >  2:1042748/1‑140 (MQ=255)
                                                          ttCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCt                                                                          >  2:711330/1‑140 (MQ=255)
                                                          ttCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCt                                                                          >  1:81054/1‑140 (MQ=255)
                                                             aaCCATAGCGAACTGTCGCTGTTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCt                                                                       <  2:1517892/140‑1 (MQ=255)
                                                              aCCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTa                                                                      >  1:38221/1‑140 (MQ=255)
                                                                cATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGc                                                                    <  2:638166/140‑1 (MQ=255)
                                                                cATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGc                                                                    <  2:301594/140‑1 (MQ=255)
                                                                  tAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGccc                                                                  >  2:793412/1‑140 (MQ=255)
                                                                    gCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCgg                                                                >  2:1069444/1‑139 (MQ=255)
                                                                    gCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGt                                                                >  1:558670/1‑140 (MQ=255)
                                                                    gCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGt                                                                >  1:527305/1‑140 (MQ=255)
                                                                     cGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTg                                                               <  2:170539/140‑1 (MQ=255)
                                                                       aaCTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCt                                                             <  2:1111446/140‑1 (MQ=255)
                                                                        aCTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTg                                                            <  1:1383301/140‑1 (MQ=255)
                                                                         cTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGa                                                           >  1:1316224/1‑140 (MQ=255)
                                                                            tCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACa                                                        >  1:805871/1‑140 (MQ=255)
                                                                            tCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACa                                                        >  2:767423/1‑140 (MQ=255)
                                                                              gctgctGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACCGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATg                                                      <  1:1212094/140‑1 (MQ=255)
                                                                               ctgctgGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGa                                                     >  2:1500318/1‑140 (MQ=255)
                                                                                   tgGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATc                                                 <  1:711330/140‑1 (MQ=255)
                                                                                      aaGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAg                                              <  2:1450829/140‑1 (MQ=255)
                                                                                        gagTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGa                                            <  1:739632/140‑1 (MQ=255)
                                                                                        gagTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGa                                            <  1:1137866/140‑1 (MQ=255)
                                                                                         agTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGAc                                           >  1:1414405/1‑140 (MQ=255)
                                                                                          gTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACa                                          <  2:911088/140‑1 (MQ=255)
                                                                                          gTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACa                                          <  1:1058622/140‑1 (MQ=255)
                                                                                          gTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACa                                          <  1:1315533/140‑1 (MQ=255)
                                                                                          gTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACa                                          >  1:403783/1‑140 (MQ=255)
                                                                                           tCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACAt                                         <  2:514208/140‑1 (MQ=255)
                                                                                            cGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATc                                        >  1:1150920/1‑140 (MQ=255)
                                                                                             gCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCa                                       >  1:719835/1‑140 (MQ=255)
                                                                                             gCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCa                                       <  1:842219/140‑1 (MQ=255)
                                                                                               ttAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCaga                                     <  1:916245/140‑1 (MQ=255)
                                                                                                tAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCagag                                    <  2:541900/140‑1 (MQ=255)
                                                                                                tAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCagag                                    <  2:881593/140‑1 (MQ=255)
                                                                                                 aaGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAgaga                                   <  2:81054/140‑1 (MQ=255)
                                                                                                   ggCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGagaag                                 <  2:531832/140‑1 (MQ=255)
                                                                                                        tGCCGTGGGACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACAcc                            >  1:656492/1‑140 (MQ=255)
                                                                                                              gggACAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACACCATGCAc                      <  1:438802/140‑1 (MQ=255)
                                                                                                                 aCAGCTTGCTGGAGAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCACCATCGCTACGGCGAAGTTAACCCGCTGCTAGCCCATGCTGAACATGAAATCAAGGACATCGGCGAAGACACCATGCACGCa                   <  2:860004/140‑1 (MQ=255)
                                                                                                                 aCAGCTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACACCATGCACGCa                   <  2:363424/140‑1 (MQ=255)
                                                                                                                     cTTGCTGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACACCATGCACGCAGAAt               >  2:1209848/1‑140 (MQ=255)
                                                                                                                          tGGAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACACCATGCACGCAGAATTTAAc          >  1:334874/1‑140 (MQ=255)
                                                                                                                           ggAAAATCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACACCATGCACGCAGAATTTAACg         <  1:751011/140‑1 (MQ=255)
                                                                                                                                aTCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACACCATGCACGCAGAATTTAACGCTCTg    <  2:1316224/140‑1 (MQ=255)
                                                                                                                                aTCCGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACAGCGCTACGGCGAAGTTATCACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACACCATGCACGCAGAATTTAACGCTCTg    <  2:1218748/140‑1 (MQ=255)
                                                                                                                                  ccGCAGCTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACACCATGCACGCAGAATTTAACGCTCTgcg  >  1:1075553/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                     
GGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACACCATGCACGCAGAATTTAACGCTCTGCG  >  NC_000913/3554179‑3554448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A